Inquiry about Missing Columns in Sample Dataset
DearDr. Christina Theodoris,
I hope this message finds you well. I am writing to seek clarification regarding the human_dcm_hcm_nf dataset provided in your repository (https://huggingface.co/datasets/ctheodoris/Genecorpus-30M/tree/main/example_input_files/cell_classification/disease_classification/human_dcm_hcm_nf.dataset)).
After downloading and examining the dataset, I noticed that some expected columns appear to be missing.
Specifically, the dataset seems to include only the 'input_ids' and 'length' columns, whereas the documentation (or another reference) suggests that additional columns such as 'age', 'cell type', etc., should also be present.
Could you please confirm if the current version of the dataset is intended to be this way? If it is an incomplete version, I would appreciate any information regarding when the full dataset might be made available. Alternatively, if I have overlooked something in the dataset or the documentation, any guidance on accessing the complete dataset would be immensely helpful.
Thank you for your time and assistance. I look forward to your response and continuing to explore the valuable resources you have provided.
Best regards,
mizu0426
Thank you for your interest in Geneformer! I just downloaded the dataset from the link you specified, and the dataset includes the expected columns (see below). The repository requires git lfs, so please ensure this is enabled, or alternatively you can download the three components of the .dataset by copying the link from the download arrow next to each of the files and replacing them within a directory named human_dcm_hcm_nf.dataset to provide to datasets load_from_disk.
