metadata
pretty_name: 1M RNA-seq SRA Samples Annotations
language:
- en
license: cc-by-4.0
tags:
- biology
- rnaseq
- sra
- metadata
- annotations
- bioinformatics
task_categories:
- tabular-classification
- text-classification
1M RNAseq SRA samples annotations
- 800k_completed_metadata.csv: main metadata table for approximately 800k annotated RNA-seq/SRA samples.
- 800k_rnaseq_metappuccino_labels.db: SQLite database containing Metappuccino labels and associated structured metadata.
- manual_dics/: folder containing manual normalization and cross-column remapping dictionaries.
- FINAL_pass_unique_biopsy_site_values_mapped_to_uberon_with_cosine.tsv: maps raw biopsy_site values to normalized UBERON anatomical terms.
- FINAL_pass_unique_organ_values_mapped_to_uberon_with_cosine.tsv: maps raw organ values to normalized UBERON anatomical terms.
- FINAL_pass_unique_disease_values_mapped_to_dot_with_cosine.tsv: maps raw disease values to normalized DOT/DOID disease terms.
- global_all_column_remaps_WITH_ONTOLOGY_MAPPING_VALUE_ONLY.tsv: defines cross-column remapping rules for values found in the wrong metadata field.