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Carbatrol
Dilantin
797.5
1
1
Cardiomyopathy
Tylenol
417.25
2
2
Coccidioidomycosis
Histoplasmosis
1273.0
3
3
Leucovorin
Methotrexate
1111.25
4
4
Angina
Plavix
1294.75
5
5
Dyslipidemia
Atherosclerosis
1303.25
6
6
Rheumatism
Sluggishness
833.5
7
7
Zofran
Ipecac Syrup
990.0
8
8
Nystagmus
Incontinence
616.25
9
9
Emaciation
Carboplatin
708.75
10
10
Zovirax
Famvir
860.25
11
11
Insulin
Avandia
990.25
12
12
Cluttering
Mannerism
669.0
13
13
Nausea
Vomiting
1456.75
14
14
Ketonuria
Chyluria
704.75
15
15
Convulsion
Ethanol
1306.25
16
16
Parasitemia
Malaria
1277.0
17
17
Proteinuria
Diabetes
1439.5
18
18
Gastroenteritis
Cromolyn
776.0
19
19
Hypoproteinemia
Hunger
710.5
20
20
Insulin
Glucagen
1261.5
21
21
Regurgitation
Protonix
1306.0
22
22
Cataracts
Epilepsy
361.0
23
23
Cataracts
Wheezing
499.25
24
24
Methadone
Ultram
837.25
25
25
Diabetes
Psoriasis
787.5
26
26
Blanching
Pallor
1173.5
27
27
Thirsty
Lasix
1171.75
28
28
Photosensitization
Aphonia
441.25
29
29
Polyuria
Chyluria
964.75
30
30
Psoriasis
Meningism
470.0
31
31
Virilism
Drooling
663.75
32
32
Psoriasis
Arthritis
1168.75
33
33
Tuberculosis
Clubbing
865.75
34
34
Pancreatitis
Diabetes
1063.75
35
35
Coumadin
Vitamin K
1441.25
36
36
Dementias
Psoriasis
582.25
37
37
Peritonitis
Grimaces
804.0
38
38
Anemia
Iron
1469.25
39
39
Encephalitis
Meningism
1247.0
40
40
Exophthalmos
Hyperthyroidism
1470.5
41
41
Obesity
Diabetes
1417.25
42
42
Thromboembolism
Hemoptysis
778.25
43
43
Pneumoniae
Ceftiaxone
1370.5
44
44
Cardura
Hytrin
906.0
45
45
Cataracts
Glucophage
573.75
46
46
Seizures
Carbatrol
998.5
47
47
Cardialgia
Nitroglycerine
1190.0
48
48
Cataracts
Insulin
463.75
49
49
Anemia
Reticulocytosis
1187.0
50
50
Convulsion
Carbatrol
1234.75
51
51
Garlic
Fish Oil
824.0
52
52
Dyslipidemia
Fish Oil
1355.5
53
53
Hemophilia
Hemoptysis
931.25
54
54
Nitroglycerine
Morphine
1126.0
55
55
Fibrillation
Angina
1248.0
56
56
Cefoxitin
Ceftiaxone
1295.5
57
57
Diabetes
Insulin
1485.0
58
58
Pallor
Aspirin
871.25
59
59
Earache
Crowning
253.25
60
60
Herpes
Cholestasis
525.75
61
61
Cardiomyopathy
Rogaine
358.25
62
62
Asthenia
Weakness
1273.0
63
63
Endep
Prozac
770.0
64
64
Dyslipidemia
Cholestyramine
1261.5
65
65
Rabies
Acne
406.25
66
66
Plague
Adenitis
753.0
67
67
Chyluria
Menouria
816.25
68
68
Alcohol
Antabuse
1244.0
69
69
Codeine
Narcan
1209.75
70
70
Cardialgia
Lithobid
853.25
71
71
Coumadin
Aspirin
1352.0
72
72
Vancocin
Glucotrol
824.75
73
73
Myelosuppression
Chloramphenicol
1280.0
74
74
Cirrhosis
Hernia
664.0
75
75
Agranulocytosis
Leukopenia
1238.0
76
76
Flumazenil
Valium
959.5
77
77
Allergy.
Heparin
1084.25
78
78
Coccidioses
Meningitis
948.0
79
79
Aneurysm
Osteoporosis
275.5
80
80
Osteoporosis
Thrombus
630.5
81
81
Sciatica
Actonel
473.5
82
82
Atherosclerosis
Ischemias
1170.5
83
83
Fibrillation
Thrombus
1285.75
84
84
Thrombocytopenia
Sciatica
443.5
85
85
Encephalitis
Meningitis
1325.75
86
86
Urethrorrhea
Tremor
354.0
87
87
Albumin
Heparin
1011.0
88
88
Polyuria
Insulin
1085.5
89
89
Snoring
Stridor
610.0
90
90
Psoriasis
Coreg
353.5
91
91
Haemorrhoids
Infertility
282.25
92
92
Epilepsy
Phenobarbital
1135.25
93
93
Epilepsy
Alcohol
856.75
94
94
Snoring
Loperamide
699.75
95
95
Asthenia
Cachexia
815.5
96
96
Seizures
Wellbutrin
816.75
97
97
Pneumoniae
Septicemia
1266.25
98
98
Exophthalmos
Hepatosplenomegaly
527.25
99
99
Hernias
Dementia
570.25

Dataset Card for UMNSRS

UMNSRS, developed by Pakhomov, et al., consists of 725 clinical term pairs whose semantic similarity and relatedness. The similarity and relatedness of each term pair was annotated based on a continuous scale by having the resident touch a bar on a touch sensitive computer screen to indicate the degree of similarity or relatedness. The following subsets are available:

  • similarity: A set of 566 UMLS concept pairs manually rated for semantic similarity (e.g. whale-dolphin) using a continuous response scale.
  • relatedness: A set of 588 UMLS concept pairs manually rated for semantic relatedness (e.g. needle-thread) using a continuous response scale.
  • similarity_mod: Modification of the UMNSRS-Similarity dataset to exclude control samples and those pairs that did not match text in clinical, biomedical and general English corpora. Exact modifications are detailed in the paper (Corpus Domain Effects on Distributional Semantic Modeling of Medical Terms. Serguei V.S. Pakhomov, Greg Finley, Reed McEwan, Yan Wang, and Genevieve B. Melton. Bioinformatics. 2016; 32(23):3635-3644). The resulting dataset contains 449 pairs.
  • relatedness_mod: Modification of the UMNSRS-Relatedness dataset to exclude control samples and those pairs that did not match text in clinical, biomedical and general English corpora. Exact modifications are detailed in the paper (Corpus Domain Effects on Distributional Semantic Modeling of Medical Terms. Serguei V.S. Pakhomov, Greg Finley, Reed McEwan, Yan Wang, and Genevieve B. Melton. Bioinformatics. 2016; 32(23):3635-3644). The resulting dataset contains 458 pairs.

Citation Information

@inproceedings{pakhomov2010semantic,
  title={Semantic similarity and relatedness between clinical terms: an experimental study},
  author={Pakhomov, Serguei and McInnes, Bridget and Adam, Terrence and Liu, Ying and Pedersen, Ted and Melton,   Genevieve B},
  booktitle={AMIA annual symposium proceedings},
  volume={2010},
  pages={572},
  year={2010},
  organization={American Medical Informatics Association}
}
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