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The dataset viewer is not available for this dataset.
The dataset tries to import a module that is not installed.
Error code: DatasetModuleNotInstalledError
Exception: ImportError
Message: To be able to use bigbio/tmvar_v3, you need to install the following dependency: bioc.
Please install it using 'pip install bioc' for instance.
Traceback: Traceback (most recent call last):
File "/src/services/worker/src/worker/job_runners/dataset/config_names.py", line 55, in compute_config_names_response
for config in sorted(get_dataset_config_names(path=dataset, token=hf_token))
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/inspect.py", line 351, in get_dataset_config_names
dataset_module = dataset_module_factory(
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/load.py", line 1512, in dataset_module_factory
raise e1 from None
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/load.py", line 1481, in dataset_module_factory
return HubDatasetModuleFactoryWithScript(
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/load.py", line 1202, in get_module
local_imports = _download_additional_modules(
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/load.py", line 294, in _download_additional_modules
raise ImportError(
ImportError: To be able to use bigbio/tmvar_v3, you need to install the following dependency: bioc.
Please install it using 'pip install bioc' for instance.Need help to make the dataset viewer work? Open a discussion for direct support.
Dataset Card for tmVar v3
This dataset contains 500 PubMed articles manually annotated with mutation mentions of various kinds and dbsnp normalizations for each of them. In addition, it contains variant normalization options such as allele-specific identifiers from the ClinGen Allele Registry It can be used for NER tasks and NED tasks, This dataset does NOT have splits.
Citation Information
@misc{https://doi.org/10.48550/arxiv.2204.03637,
title = {tmVar 3.0: an improved variant concept recognition and normalization tool},
author = {
Wei, Chih-Hsuan and Allot, Alexis and Riehle, Kevin and Milosavljevic,
Aleksandar and Lu, Zhiyong
},
year = 2022,
publisher = {arXiv},
doi = {10.48550/ARXIV.2204.03637},
url = {https://arxiv.org/abs/2204.03637},
copyright = {Creative Commons Attribution 4.0 International},
keywords = {
Computation and Language (cs.CL), FOS: Computer and information sciences,
FOS: Computer and information sciences
}
}
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