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Error code: DatasetModuleNotInstalledError Exception: ImportError Message: To be able to use bigbio/pubtator_central, you need to install the following dependency: bioc. Please install it using 'pip install bioc' for instance. Traceback: Traceback (most recent call last): File "/src/services/worker/src/worker/job_runners/dataset/config_names.py", line 55, in compute_config_names_response for config in sorted(get_dataset_config_names(path=dataset, token=hf_token)) File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/inspect.py", line 351, in get_dataset_config_names dataset_module = dataset_module_factory( File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/load.py", line 1512, in dataset_module_factory raise e1 from None File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/load.py", line 1481, in dataset_module_factory return HubDatasetModuleFactoryWithScript( File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/load.py", line 1202, in get_module local_imports = _download_additional_modules( File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/load.py", line 294, in _download_additional_modules raise ImportError( ImportError: To be able to use bigbio/pubtator_central, you need to install the following dependency: bioc. Please install it using 'pip install bioc' for instance.
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Dataset Card for PubTator Central
PubTator Central (PTC, https://www.ncbi.nlm.nih.gov/research/pubtator/) is a web service for exploring and retrieving bioconcept annotations in full text biomedical articles. PTC provides automated annotations from state-of-the-art text mining systems for genes/proteins, genetic variants, diseases, chemicals, species and cell lines, all available for immediate download. PTC annotates PubMed (30 million abstracts), the PMC Open Access Subset and the Author Manuscript Collection (3 million full text articles). Updated entity identification methods and a disambiguation module based on cutting-edge deep learning techniques provide increased accuracy.
Citation Information
@article{10.1093/nar/gkz389,
title = {{PubTator central: automated concept annotation for biomedical full text articles}},
author = {Wei, Chih-Hsuan and Allot, Alexis and Leaman, Robert and Lu, Zhiyong},
year = 2019,
month = {05},
journal = {Nucleic Acids Research},
volume = 47,
number = {W1},
pages = {W587-W593},
doi = {10.1093/nar/gkz389},
issn = {0305-1048},
url = {https://doi.org/10.1093/nar/gkz389},
eprint = {https://academic.oup.com/nar/article-pdf/47/W1/W587/28880193/gkz389.pdf}
}
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