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The dataset viewer is not available for this dataset.
Cannot get the config names for the dataset.
Error code:   ConfigNamesError
Exception:    ImportError
Message:      To be able to use bigbio/nlmchem, you need to install the following dependency: bioc.
Please install it using 'pip install bioc' for instance.
Traceback:    Traceback (most recent call last):
                File "/src/services/worker/src/worker/job_runners/dataset/config_names.py", line 66, in compute_config_names_response
                  config_names = get_dataset_config_names(
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/inspect.py", line 347, in get_dataset_config_names
                  dataset_module = dataset_module_factory(
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/load.py", line 1914, in dataset_module_factory
                  raise e1 from None
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/load.py", line 1880, in dataset_module_factory
                  return HubDatasetModuleFactoryWithScript(
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/load.py", line 1504, in get_module
                  local_imports = _download_additional_modules(
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/load.py", line 354, in _download_additional_modules
                  raise ImportError(
              ImportError: To be able to use bigbio/nlmchem, you need to install the following dependency: bioc.
              Please install it using 'pip install bioc' for instance.

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Dataset Card for NLM-Chem

NLM-Chem corpus consists of 150 full-text articles from the PubMed Central Open Access dataset, comprising 67 different chemical journals, aiming to cover a general distribution of usage of chemical names in the biomedical literature. Articles were selected so that human annotation was most valuable (meaning that they were rich in bio-entities, and current state-of-the-art named entity recognition systems disagreed on bio-entity recognition.

Citation Information

@Article{islamaj2021nlm,
title={NLM-Chem, a new resource for chemical entity recognition in PubMed full text literature},
author={Islamaj, Rezarta and Leaman, Robert and Kim, Sun and Kwon, Dongseop and Wei, Chih-Hsuan and Comeau, Donald C and Peng, Yifan and Cissel, David and Coss, Cathleen and Fisher, Carol and others},
journal={Scientific Data},
volume={8},
number={1},
pages={1--12},
year={2021},
publisher={Nature Publishing Group}
}
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