The dataset preview is not available for this split.
Cannot load the dataset split (in streaming mode) to extract the first rows.
Error code: StreamingRowsError
Exception: FileNotFoundError
Message: https://rgai.sed.hu/sites/rgai.sed.hu/files/bioscope.zip
Traceback: Traceback (most recent call last):
File "/src/services/worker/.venv/lib/python3.9/site-packages/aiohttp/connector.py", line 980, in _wrap_create_connection
return await self._loop.create_connection(*args, **kwargs) # type: ignore[return-value] # noqa
File "/usr/local/lib/python3.9/asyncio/base_events.py", line 1090, in create_connection
transport, protocol = await self._create_connection_transport(
File "/usr/local/lib/python3.9/asyncio/base_events.py", line 1120, in _create_connection_transport
await waiter
File "/usr/local/lib/python3.9/asyncio/sslproto.py", line 534, in data_received
ssldata, appdata = self._sslpipe.feed_ssldata(data)
File "/usr/local/lib/python3.9/asyncio/sslproto.py", line 188, in feed_ssldata
self._sslobj.do_handshake()
File "/usr/local/lib/python3.9/ssl.py", line 945, in do_handshake
self._sslobj.do_handshake()
ssl.SSLCertVerificationError: [SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: Hostname mismatch, certificate is not valid for 'rgai.sed.hu'. (_ssl.c:1129)
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File "/src/services/worker/.venv/lib/python3.9/site-packages/fsspec/implementations/http.py", line 417, in _info
await _file_info(
File "/src/services/worker/.venv/lib/python3.9/site-packages/fsspec/implementations/http.py", line 833, in _file_info
r = await session.get(url, allow_redirects=ar, **kwargs)
File "/src/services/worker/.venv/lib/python3.9/site-packages/aiohttp/client.py", line 536, in _request
conn = await self._connector.connect(
File "/src/services/worker/.venv/lib/python3.9/site-packages/aiohttp/connector.py", line 540, in connect
proto = await self._create_connection(req, traces, timeout)
File "/src/services/worker/.venv/lib/python3.9/site-packages/aiohttp/connector.py", line 901, in _create_connection
_, proto = await self._create_direct_connection(req, traces, timeout)
File "/src/services/worker/.venv/lib/python3.9/site-packages/aiohttp/connector.py", line 1206, in _create_direct_connection
raise last_exc
File "/src/services/worker/.venv/lib/python3.9/site-packages/aiohttp/connector.py", line 1175, in _create_direct_connection
transp, proto = await self._wrap_create_connection(
File "/src/services/worker/.venv/lib/python3.9/site-packages/aiohttp/connector.py", line 982, in _wrap_create_connection
raise ClientConnectorCertificateError(req.connection_key, exc) from exc
aiohttp.client_exceptions.ClientConnectorCertificateError: Cannot connect to host rgai.sed.hu:443 ssl:True [SSLCertVerificationError: (1, "[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: Hostname mismatch, certificate is not valid for 'rgai.sed.hu'. (_ssl.c:1129)")]
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File "/src/services/worker/src/worker/utils.py", line 327, in get_rows_or_raise
return get_rows(
File "/src/services/worker/src/worker/utils.py", line 271, in decorator
return func(*args, **kwargs)
File "/src/services/worker/src/worker/utils.py", line 307, in get_rows
rows_plus_one = list(itertools.islice(ds, rows_max_number + 1))
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/iterable_dataset.py", line 937, in __iter__
for key, example in ex_iterable:
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/iterable_dataset.py", line 113, in __iter__
yield from self.generate_examples_fn(**self.kwargs)
File "/tmp/modules-cache/datasets_modules/datasets/bigbio--bioscope/f16d29a729f31464974b132c57267acaf82cc7f87fdcb2e3a78a87d07e806f62/bioscope.py", line 205, in _generate_examples
sentences = self._load_sentences(data_files)
File "/tmp/modules-cache/datasets_modules/datasets/bigbio--bioscope/f16d29a729f31464974b132c57267acaf82cc7f87fdcb2e3a78a87d07e806f62/bioscope.py", line 240, in _load_sentences
ET.parse(os.path.join(data_files, "abstracts.xml"))
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/streaming.py", line 71, in wrapper
return function(*args, use_auth_token=use_auth_token, **kwargs)
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/download/streaming_download_manager.py", line 835, in xet_parse
with xopen(source, "rb", use_auth_token=use_auth_token) as f:
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/download/streaming_download_manager.py", line 498, in xopen
file_obj = fsspec.open(file, mode=mode, *args, **kwargs).open()
File "/src/services/worker/.venv/lib/python3.9/site-packages/fsspec/core.py", line 419, in open
return open_files(
File "/src/services/worker/.venv/lib/python3.9/site-packages/fsspec/core.py", line 272, in open_files
fs, fs_token, paths = get_fs_token_paths(
File "/src/services/worker/.venv/lib/python3.9/site-packages/fsspec/core.py", line 586, in get_fs_token_paths
fs = filesystem(protocol, **inkwargs)
File "/src/services/worker/.venv/lib/python3.9/site-packages/fsspec/registry.py", line 253, in filesystem
return cls(**storage_options)
File "/src/services/worker/.venv/lib/python3.9/site-packages/fsspec/spec.py", line 76, in __call__
obj = super().__call__(*args, **kwargs)
File "/src/services/worker/.venv/lib/python3.9/site-packages/fsspec/implementations/zip.py", line 58, in __init__
self.fo = fo.__enter__() # the whole instance is a context
File "/src/services/worker/.venv/lib/python3.9/site-packages/fsspec/core.py", line 102, in __enter__
f = self.fs.open(self.path, mode=mode)
File "/src/services/worker/.venv/lib/python3.9/site-packages/fsspec/spec.py", line 1151, in open
f = self._open(
File "/src/services/worker/.venv/lib/python3.9/site-packages/fsspec/implementations/http.py", line 356, in _open
size = size or self.info(path, **kwargs)["size"]
File "/src/services/worker/.venv/lib/python3.9/site-packages/fsspec/asyn.py", line 115, in wrapper
return sync(self.loop, func, *args, **kwargs)
File "/src/services/worker/.venv/lib/python3.9/site-packages/fsspec/asyn.py", line 100, in sync
raise return_result
File "/src/services/worker/.venv/lib/python3.9/site-packages/fsspec/asyn.py", line 55, in _runner
result[0] = await coro
File "/src/services/worker/.venv/lib/python3.9/site-packages/fsspec/implementations/http.py", line 430, in _info
raise FileNotFoundError(url) from exc
FileNotFoundError: https://rgai.sed.hu/sites/rgai.sed.hu/files/bioscope.zipNeed help to make the dataset viewer work? Open an discussion for direct support.
Dataset Card for BioScope
The BioScope corpus consists of medical and biological texts annotated for negation, speculation and their linguistic scope. This was done to allow a comparison between the development of systems for negation/hedge detection and scope resolution. The BioScope corpus was annotated by two independent linguists following the guidelines written by our linguist expert before the annotation of the corpus was initiated.
Citation Information
@article{vincze2008bioscope,
title={The BioScope corpus: biomedical texts annotated for uncertainty, negation and their scopes},
author={Vincze, Veronika and Szarvas, Gy{"o}rgy and Farkas, Rich{'a}rd and M{'o}ra, Gy{"o}rgy and Csirik, J{'a}nos},
journal={BMC bioinformatics},
volume={9},
number={11},
pages={1--9},
year={2008},
publisher={BioMed Central}
}
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