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IEETA/BioNExt
Updated
Error code: ConfigNamesError Exception: ImportError Message: To be able to use bigbio/biored, you need to install the following dependency: bioc. Please install it using 'pip install bioc' for instance. Traceback: Traceback (most recent call last): File "/src/services/worker/src/worker/job_runners/dataset/config_names.py", line 66, in compute_config_names_response config_names = get_dataset_config_names( File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/inspect.py", line 347, in get_dataset_config_names dataset_module = dataset_module_factory( File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/load.py", line 1914, in dataset_module_factory raise e1 from None File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/load.py", line 1880, in dataset_module_factory return HubDatasetModuleFactoryWithScript( File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/load.py", line 1504, in get_module local_imports = _download_additional_modules( File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/load.py", line 354, in _download_additional_modules raise ImportError( ImportError: To be able to use bigbio/biored, you need to install the following dependency: bioc. Please install it using 'pip install bioc' for instance.
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Relation Extraction corpus with multiple entity types (e.g., gene/protein, disease, chemical) and relation pairs (e.g., gene-disease; chemical-chemical), on a set of 600 PubMed articles
@article{DBLP:journals/corr/abs-2204-04263,
author = {Ling Luo and
Po{-}Ting Lai and
Chih{-}Hsuan Wei and
Cecilia N. Arighi and
Zhiyong Lu},
title = {BioRED: {A} Comprehensive Biomedical Relation Extraction Dataset},
journal = {CoRR},
volume = {abs/2204.04263},
year = {2022},
url = {https://doi.org/10.48550/arXiv.2204.04263},
doi = {10.48550/arXiv.2204.04263},
eprinttype = {arXiv},
eprint = {2204.04263},
timestamp = {Wed, 11 May 2022 15:24:37 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2204-04263.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}