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bigbio
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biored

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The dataset viewer is not available for this dataset.
Cannot get the config names for the dataset.
Error code:   ConfigNamesError
Exception:    ImportError
Message:      To be able to use bigbio/biored, you need to install the following dependency: bioc.
Please install it using 'pip install bioc' for instance.
Traceback:    Traceback (most recent call last):
                File "/src/services/worker/src/worker/job_runners/dataset/config_names.py", line 66, in compute_config_names_response
                  config_names = get_dataset_config_names(
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/inspect.py", line 347, in get_dataset_config_names
                  dataset_module = dataset_module_factory(
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/load.py", line 1914, in dataset_module_factory
                  raise e1 from None
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/load.py", line 1880, in dataset_module_factory
                  return HubDatasetModuleFactoryWithScript(
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/load.py", line 1504, in get_module
                  local_imports = _download_additional_modules(
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/load.py", line 354, in _download_additional_modules
                  raise ImportError(
              ImportError: To be able to use bigbio/biored, you need to install the following dependency: bioc.
              Please install it using 'pip install bioc' for instance.

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Dataset Card for BioRED

Relation Extraction corpus with multiple entity types (e.g., gene/protein, disease, chemical) and relation pairs (e.g., gene-disease; chemical-chemical), on a set of 600 PubMed articles

Citation Information 

@article{DBLP:journals/corr/abs-2204-04263,
  author    = {Ling Luo and
               Po{-}Ting Lai and
               Chih{-}Hsuan Wei and
               Cecilia N. Arighi and
               Zhiyong Lu},
  title     = {BioRED: {A} Comprehensive Biomedical Relation Extraction Dataset},
  journal   = {CoRR},
  volume    = {abs/2204.04263},
  year      = {2022},
  url       = {https://doi.org/10.48550/arXiv.2204.04263},
  doi       = {10.48550/arXiv.2204.04263},
  eprinttype = {arXiv},
  eprint    = {2204.04263},
  timestamp = {Wed, 11 May 2022 15:24:37 +0200},
  biburl    = {https://dblp.org/rec/journals/corr/abs-2204-04263.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
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Homepage:
ftp.ncbi.nlm.nih.gov
Pubmed:
True
Public:
True
Tasks:
NER,RE

Models trained or fine-tuned on bigbio/biored