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Cannot get the config names for the dataset.
Error code: ConfigNamesError
Exception: ImportError
Message: To be able to use bigbio/bioid, you need to install the following dependency: bioc.
Please install it using 'pip install bioc' for instance.
Traceback: Traceback (most recent call last):
File "/src/services/worker/src/worker/job_runners/dataset/config_names.py", line 66, in compute_config_names_response
config_names = get_dataset_config_names(
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/inspect.py", line 347, in get_dataset_config_names
dataset_module = dataset_module_factory(
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/load.py", line 1914, in dataset_module_factory
raise e1 from None
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/load.py", line 1880, in dataset_module_factory
return HubDatasetModuleFactoryWithScript(
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/load.py", line 1504, in get_module
local_imports = _download_additional_modules(
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/load.py", line 354, in _download_additional_modules
raise ImportError(
ImportError: To be able to use bigbio/bioid, you need to install the following dependency: bioc.
Please install it using 'pip install bioc' for instance.Need help to make the dataset viewer work? Make sure to review how to configure the dataset viewer, and open a discussion for direct support.
Dataset Card for Bio-ID
The Bio-ID track focuses on entity tagging and ID assignment to selected bioentity types. The task is to annotate text from figure legends with the entity types and IDs for taxon (organism), gene, protein, miRNA, small molecules, cellular components, cell types and cell lines, tissues and organs. The track draws on SourceData annotated figure legends (by panel), in BioC format, and the corresponding full text articles (also BioC format) provided for context.
Citation Information
@inproceedings{arighi2017bio,
title={Bio-ID track overview},
author={Arighi, Cecilia and Hirschman, Lynette and Lemberger, Thomas and Bayer, Samuel and Liechti, Robin and Comeau, Donald and Wu, Cathy},
booktitle={Proc. BioCreative Workshop},
volume={482},
pages={376},
year={2017}
}
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