Datasets:

bigbio
/

bio_simlex

id stringlengths 1 3	document_id stringlengths 1 3	text_1 stringlengths 2 18	text_2 stringlengths 3 18	label stringlengths 4 5
0	0	therapy	treatment	9.32
1	1	disorder	disease	6.97
2	2	tumor	neoplasm	7.29
3	3	formation	synthesis	7.98
4	4	growth	ontogeny	2.63
5	5	cytosol	interference	0.00
6	6	muzzle	obstruction	1.64
7	7	intron	swab	0.00
8	8	disability	vasculature	0.00
9	9	centrosome	cytochrome	0.33
10	10	mesh	polymerase	0.00
11	11	assessment	evaluation	9.66
12	12	likelihood	probability	8.99
13	13	injection	shot	7.31
14	14	adhesion	attachment	9.32
15	15	deviation	displacement	1.64
16	16	activation	risk	0.00
17	17	osteoblast	replication	0.00
18	18	anemia	polyacrylamide	0.00
19	19	disorientation	nutrition	0.00
20	20	solution	vector	0.00
21	21	abundance	worm	0.00
22	22	replication	doubling	7.30
23	23	intercourse	sex	9.32
24	24	eye	globe	3.29
25	25	vaccination	immunization	9.32
26	26	categorization	classification	8.99
27	27	cholesterol	diversity	0.00
28	28	force	senescence	0.00
29	29	panther	pulse	0.00
30	30	infiltration	neonate	0.00
31	31	filtration	reconstruction	0.00
32	32	impregnation	tumorigenesis	0.00
33	33	pathophysiology	dysfunction	4.31
34	34	vessel	vascularity	5.97
35	35	excision	removal	8.65
36	36	physician	doctor	9.32
37	37	obesity	adiposity	7.98
38	38	coefficient	distention	0.00
39	39	deposition	endothelium	0.00
40	40	ethanol	protection	0.33
41	41	contraction	paraffin	0.00
42	42	daughter	etiology	0.00
43	43	neoangiogenesis	staining	0.00
44	44	susceptibility	predisposition	6.97
45	45	prophylaxis	prevention	6.96
46	46	susceptibility	diathesis	6.29
47	47	adherence	attachment	8.64
48	48	spine	backbone	9.66
49	49	hydrophobia	interferon	0.00
50	50	classification	invasion	0.00
51	51	mobility	neuroticism	0.00
52	52	thymocyte	transformant	0.00
53	53	handedness	redox	0.00
54	54	reimplantation	replacement	4.96
55	55	atmosphere	climate	4.63
56	56	concept	idea	8.99
57	57	background	history	5.32
58	58	chain	link	4.31
59	59	rod	staff	3.96
60	60	demand	teaching	0.00
61	61	lack	rise	0.00
62	62	encounter	school	0.00
63	63	humidity	investigator	0.00
64	64	approximation	Asian	0.00
65	65	rule	scale	0.98
66	66	focus	lens	2.65
67	67	rest	work	0.00
68	68	month	week	1.65
69	69	week	year	1.65
70	70	month	year	1.65
71	71	flatus	second	0.00
72	72	disk	specification	0.00
73	73	inducement	liberty	0.33
74	74	agreement	China	0.00
75	75	path	test	0.98
76	76	cost	value	7.31
77	77	attitude	mood	7.31
78	78	attitude	behavior	5.30
79	79	behavior	mood	3.97
80	80	paper	sheet	5.97
81	81	committee	member	2.31
82	82	balance	study	0.65
83	83	diameter	smoke	0.00
84	84	county	total	0.00
85	85	plot	unit	0.33
86	86	broth	call	0.00
87	87	movie	video	4.97
88	88	dish	plate	7.99
89	89	existence	presence	4.64
90	90	alternative	option	8.65
91	91	alternative	choice	7.31
92	92	choice	option	8.65
93	93	curvature	grief	0.00
94	94	conversion	hole	0.00
95	95	room	word	0.00
96	96	gasoline	work	0.00
97	97	August	example	0.00
98	98	attorney	night	0.00
99	99	happiness	joy	8.66

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Dataset Card for Bio-SimLex

Bio-SimLex enables intrinsic evaluation of word representations. This evaluation can serve as a predictor of performance on various downstream tasks in the biomedical domain. The results on Bio-SimLex using standard word representation models highlight the importance of developing dedicated evaluation resources for NLP in biomedicine for particular word classes (e.g. verbs).

Citation Information

@article{article,
  title        = {
    Bio-SimVerb and Bio-SimLex: Wide-coverage evaluation sets of word
    similarity in biomedicine
  },
  author       = {Chiu, Billy and Pyysalo, Sampo and Vulić, Ivan and Korhonen, Anna},
  year         = 2018,
  month        = {02},
  journal      = {BMC Bioinformatics},
  volume       = 19,
  pages        = {},
  doi          = {10.1186/s12859-018-2039-z}
}

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