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Synthyra
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haddock_table

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pdb_id
stringlengths
4
4
chain_id_1
stringlengths
1
4
chain_id_2
stringlengths
1
2
protein_1
stringlengths
3
39
protein_2
stringlengths
3
42
kd
float64
0
0
pkd
float64
3.19
14.3
method
stringclasses
7 values
ph
float64
5
8.7
temperature
float64
18
37
reference
stringlengths
30
51
type
stringclasses
4 values
7CEI
A
B
Colicin E7 nuclease
Im7 immunity protein
0
14.3
F
7
25
Keeble et al. (2006) Biochemistry 3243.
E
1DFJ
E
I
Ribonuclease A
Rnase inhibitor
0
13.23
B
6
25
Vincentini et al. (1990) Biochemistry 8827.
E
1BVN
P
T
α-amylase
Tendamistat
0
11.05
D
7
25
Piervincenzi and Chilkoti (2004) Biomol Eng 21:33.
E
1IQD
AB
C
Fab
Factor VIII domain C2
0
10.85
D
5
25
Jacquemin et al. (1998) Blood 92:496.
AB
1MAH
A
F
Acetylcholinesterase
Fasciculin 2
0
10.6
C
7.5
25
Marchot et al. (1993) J Biol Chem 12458.
E
1EZU
C
AB
D102N Trypsin
Y69F D70P Ecotin
0
10.1
E
8
25
Yang and Craik (1998) J Mol Biol 1001.
E
1JPS
HL
T
Fab D3H44
Tissue factor
0
10
D
7.4
25
Presta et al. (2001) Thromb Haem 3:379.
A
1IBR
A
B
Ran GTPase
Importin β
0
9.52
C
7.4
25
Görlich et al. (1996) EMBO 5584.
O
1R0R
A
C
Subtilisin Carlsberg
OMTKY
0
9.47
F
8.3
21
Horn et al. (2003) J Mol Biol 331:497.
E
1T6B
X
Y
Anthrax protective antigen
Anthrax toxin receptor
0
9.4
D
7.4
25
Wigdelsworth et al. (2004) J Biol Chem 23349.
O
1KXP
A
D
Actin
Vitamin D binding protein
0
9
C
7.5
25
McLeod et al. (1989) J Biol Chem 1260.
O
2FD6
HL
U
Urokinase plasminogen receptor antibody
Urokinase plasminogen activator receptor
0
9
C
7.4
23
Appella et al (1987) J Biol Chem 4437.
A
2I25
N
L
Shark single domain antigen receptor
Lysozyme
0
9
D
7.4
25
Dooley et al. (2006) PNAS 1846.
A
2B42
A
B
Xylanase
Xylanase inhibitor
0
8.97
D
5
22
Fierens et al (2005) Febs J 5872.
E
2JEL
HL
P
Fab Jel42
HPr
0
8.55
A
7.2
23
Smallshaw et al. (1998) J Mol Biol 280:765.
AB
1ML0
ABC
H
Hpr Kinase C-ter domain
HPr
0
8.51
D
8
25
Lavergne (2002) Biochemistry 41(20):6218.
E
1BJ1
HL
VW
Fab
vEGF
0
8.47
D
7.4
25
Muller et al. (1998) Structure 6(9):1153.
AB
1KXQ
H
A
Camel VHH
Pancreatic α-amylase
0
8.46
D
7.4
25
Lauwereys et al. (1998) EMBO 13:3512.
AB
1OPH
A
B
α-1-antitrypsin
Trypsinogen
0
8.3
A
7.4
25
Stratikos and Gettins (1997) PNAS 94:453.
E
1M10
A
B
Von Willebrand Factor Domain A1
Glycoprotein IB-α
0
8.24
D
7.4
25
Huizinga et al. (2002) Science 297:1176.
E
2AJF
A
E
ACE2
SARS spike protein receptor binding domain
0
7.79
D
7.4
25
Li et al. (2005) EMBO 24:1634.
O
1IJK
A
BC
Von Willebrand Factor Domain A1
Botrocetin
0
7.64
C
7.4
25
Miura et al. (2000) J Biol Chem 7539.
E
1H1V
A
G
Actin
Gelsonin
0
7.64
B
7
20
Kinosian et al. (1996) Biochemistry 16550.
O
1E6J
HL
P
Fab
HIV-1 capsid protein 24
0
7.53
D
7.4
25
Monaco-Malbet et al. (2000) Structure 8:1069.
A
2HLE
A
B
Ephrin B4 receptor
Ephrin B2 ectodomain
0
7.4
F
7.8
25
Chrencik et al. (2006) J Biol Chem 28185.
O
1A2K
C
AB
Ran GTPase
Nuclear Transport Factor 2
0
7
F
7.5
25
Chaillan-Huntington et al. (2000) J Biol Chem 5874.
O
2C0L
A
B
PTS1 and TRP region of PEX5
SCP2
0
6.96
F
7.4
35
Stanley et al. (2006) Mol Cell 24:653.
O
1RLB
ABCD
E
Transthyretin
Retinol binding protein
0
6.87
A
7.4
25
Noy et al. (1992) Biochemistry 31:11118.
O
1GRN
A
B
CDC42 GTPase
CDC42 GAP
0
6.41
A
8
25
Hoffman et al. (1998) J Biol Chem 4392.
O
1E6E
A
B
Adrenoxin reductase
Adrenoxin
0.000001
6.07
D
7.4
25
Schiffler et al. (2004) J Biol Chem 34269.
E
1J2J
A
B
Arf1 GTPase
GAT domain of GGA1
0.000001
5.96
D
8
25
Shiba et al. (2003) Nat Struct Biol 10:386.
O
2BTF
A
P
Actin
Profilin
0.000002
5.7
A
7
25
Schlűter et al. (1998) J Cell Sci 111:3261.
O
1HE8
B
A
Ras GTPase
PIP3 kinase
0.000002
5.6
A
7.5
20
Pacold et al. (2000) Cell 103:931.
O
1B6C
A
B
FKBP Binding Protein
TGFβ receptor
0.000003
5.55
D
7.4
25
Huse et al. (2001) Mol Cell 8:671.
O
1I4D
D
AB
Rac GTPase
Arfaptin
0.000003
5.52
F
8.7
22
Tarricone et al. (2001) Nature 411:215.
O
1GHQ
A
B
Complement C3
Epstein-Barr virus receptor CR2
0.000004
5.37
D
7.4
25
Sarrias et al. (2001) J Immun 167:1490.
O
2MTA
HL
A
Methylamine Dehydrogenase
Amicyanin
0.000005
5.35
G
7.5
25
Davidson et al. (1993) BBA 1144:39.
E
1E96
A
B
Rac GTPase
p67 Phox
0.000006
5.22
F
7
18
Lapouge et al. (2000) Mol Cell 6:899.
O
1Z0K
A
B
Rab4A GTPase
RAB4 binding domain of Rabenosyn
0.000007
5.14
D
7.5
25
Eathiraj et al. (2005) Nature 436:415.
O
1QA9
A
B
CD2
CD58
0.000009
5.05
D
7.4
37
van der Merwe et al. (1994) Biochemistry 10149.
O
1AK4
A
D
Cyclophilin
HIV capsid
0.000016
4.8
F
6.5
20
Yoo et al. (1997) J Mol Biol 269:780.
O
1GCQ
B
C
GRB2 C-ter SH3 domain
GRB2 N-ter SH3 domain
0.000017
4.77
D
7.4
25
Nishida et al. (2001) EMBO 20:2995.
O
1WQ1
R
G
Ras GTPase
Ras GAP
0.000017
4.77
B
7.5
25
Eccleston et al. (1993) J Biol Chem 27012.
O
2OOB
A
B
Ubiquitin ligase
Ubiquitin
0.00006
4.22
F
7
25
Kozlov et al (2007) J Biol Chem 35787.
O
1AKJ
AB
DE
MHC CLass 1 HLA-A2
T-cell CD8 coreceptor
0.000126
3.9
D
7.4
25
Wyer et all (1999) Immunity 10:219.
O
1S1Q
A
B
UEV domain
Ubiquitin
0.000635
3.19
D
7.2
20
Pornillos et al (2002), EMBO J 21:2397.
O

Information for the Haddock protein-protein affinity benchmark from here.

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