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QizhiPei
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BioT5_finetune_dataset

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train

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Cannot extract the features (columns) for the split 'train' of the config 'default' of the dataset.

Error code:   FeaturesError
Exception:    ValueError
Message:      Not able to read records in the JSON file at hf://datasets/QizhiPei/BioT5_finetune_dataset@90c5e4bca4a34772bb569a357454536938c6e389/tasks/task100_sider_general_disorders_and_administration_site_conditions_molnet_train.json. You should probably indicate the field of the JSON file containing your records. This JSON file contain the following fields: ['Contributors', 'Categories', 'Reasoning', 'URL', 'Instruction_language', 'Domains', 'Positive Examples', 'Negative Examples', 'Instances', 'Source', 'Definition', 'Input_language', 'Output_language', 'Instance License']. Select the correct one and provide it as `field='XXX'` to the dataset loading method. 
Traceback:    Traceback (most recent call last):
                File "/src/services/worker/src/worker/job_runners/split/first_rows_from_streaming.py", line 132, in compute_first_rows_response
                  iterable_dataset = iterable_dataset._resolve_features()
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/iterable_dataset.py", line 2211, in _resolve_features
                  features = _infer_features_from_batch(self.with_format(None)._head())
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/iterable_dataset.py", line 1235, in _head
                  return _examples_to_batch(list(self.take(n)))
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/iterable_dataset.py", line 1384, in __iter__
                  for key, example in ex_iterable:
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/iterable_dataset.py", line 1040, in __iter__
                  yield from islice(self.ex_iterable, self.n)
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/iterable_dataset.py", line 282, in __iter__
                  for key, pa_table in self.generate_tables_fn(**self.kwargs):
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/packaged_modules/json/json.py", line 161, in _generate_tables
                  raise ValueError(
              ValueError: Not able to read records in the JSON file at hf://datasets/QizhiPei/BioT5_finetune_dataset@90c5e4bca4a34772bb569a357454536938c6e389/tasks/task100_sider_general_disorders_and_administration_site_conditions_molnet_train.json. You should probably indicate the field of the JSON file containing your records. This JSON file contain the following fields: ['Contributors', 'Categories', 'Reasoning', 'URL', 'Instruction_language', 'Domains', 'Positive Examples', 'Negative Examples', 'Instances', 'Source', 'Definition', 'Input_language', 'Output_language', 'Instance License']. Select the correct one and provide it as `field='XXX'` to the dataset loading method.

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References

For more information, please refer to our paper and GitHub repository.

Paper: BioT5: Enriching Cross-modal Integration in Biology with Chemical Knowledge and Natural Language Associations

GitHub: BioT5

Authors: Qizhi Pei, Wei Zhang, Jinhua Zhu, Kehan Wu, Kaiyuan Gao, Lijun Wu, Yingce Xia, and Rui Yan

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