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evaluation-covidqa-test-mistral-instruct-7b

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{ "_id": 1806, "label": "FAIL", "text": " {\"REASONING\": [\"The answer mentions the use of surveillance systems globally to monitor the severity of disease symptoms, trends, and its geographical spread.\", \"The document describes the implementation of COVID-19 surveillance in the WHO European Region and the collection of data on cases, including their symptoms and location.\"], \"SCORE\": \"PASS\"}" }

[ "\"The answer mentions the use of surveillance systems globally to monitor the severity of disease symptoms, trends, and its geographical spread.\", \"The document describes the implementation of COVID-19 surveillance in the WHO European Region and the collection of data on cases, including their symptoms and location.\"" ]

{ "_id": 116, "label": "PASS", "text": " {\"REASONING\": [\"The answer directly quotes the percentages of decrease in radiologic pneumonia due to Haemophilus influenzae type B conjugate vaccination and pneumococcal conjugate vaccination from the document.\"], \"SCORE\": \"PASS\"}" }

[ "\"The answer directly quotes the percentages of decrease in radiologic pneumonia due to Haemophilus influenzae type B conjugate vaccination and pneumococcal conjugate vaccination from the document.\"" ]

{ "_id": 1465, "label": "PASS", "text": " {\"REASONING\": [\"The answer directly quotes the information from the document regarding the detection of 2019-nCoV RNA in the blood and anal swabs.\", \"The answer does not offer new information beyond the context provided in the document.\", \"The answer is faithful to the contents of the document.\"], \"SCORE\": \"PASS\"}" }

[ "\"The answer directly quotes the information from the document regarding the detection of 2019-nCoV RNA in the blood and anal swabs.\", \"The answer does not offer new information beyond the context provided in the document.\", \"The answer is faithful to the contents of the document.\"" ]

{ "_id": 34, "label": "FAIL", "text": " {\"REASONING\": [\n- The document describes the intracellular requirements for HBV infection as less stringent, and the failure of HBV infection being largely due to strict restriction on the interaction between HBV virions and the cell membrane.\n- The document mentions that the high affinity membrane partners for HBV are elusive, and that the HBV envelope protein, specifically the preS1 peptide, plays an essential role in the infection process by binding to cellular receptors.\n- The answer only mentions cell-surface factors, which aligns with the information in the document about the high affinity membrane partners for HBV.\n], \"SCORE\": \"PASS\"}" }

[ "\n- The document describes the intracellular requirements for HBV infection as less stringent, and the failure of HBV infection being largely due to strict restriction on the interaction between HBV virions and the cell membrane.\n- The document mentions that the high affinity membrane partners for HBV are elusive, and that the HBV envelope protein, specifically the preS1 peptide, plays an essential role in the infection process by binding to cellular receptors.\n- The answer only mentions cell-surface factors, which aligns with the information in the document about the high affinity membrane partners for HBV.\n" ]

{ "_id": 1512, "label": "PASS", "text": " {\"REASONING\": [\"The answer is consistent with the document as it states that the movement restriction policy was successful in reducing the number of secondary transmissions on board.\", \"The document provides evidence that the incidence of infection among passengers without close contact was very small after the implementation of the movement restriction policy on February 5.\", \"The answer does not offer new information beyond the context provided in the document.\"], \"SCORE\": \"PASS\"}" }

[ "\"The answer is consistent with the document as it states that the movement restriction policy was successful in reducing the number of secondary transmissions on board.\", \"The document provides evidence that the incidence of infection among passengers without close contact was very small after the implementation of the movement restriction policy on February 5.\", \"The answer does not offer new information beyond the context provided in the document.\"" ]

{ "_id": 1207, "label": "FAIL", "text": " {\"REASONING\": [\"The document mentions that Chikungunya virus is vectored by Ae. aegypti and Ae. albopictus in Asia. However, the answer only mentions Ae. aegypti and Culex quinquefasciatus.\"], \"SCORE\": \"FAIL\"}" }

[ "\"The document mentions that Chikungunya virus is vectored by Ae. aegypti and Ae. albopictus in Asia. However, the answer only mentions Ae. aegypti and Culex quinquefasciatus.\"" ]

{ "_id": 375, "label": "FAIL", "text": " {\"REASONING\": [\n- The DOCUMENT provides the genome size of the PEDV virus as ranging from approximately 26 to 32 kb.\n- The ANSWER states that the genome size ranges from 28 to 34 kb.\n], \"SCORE\": \"FAIL\"\n\nReasoning:\n- The ANSWER expands the range of the genome size beyond the information provided in the DOCUMENT.\n- The ANSWER does not contradict the information in the DOCUMENT, but it offers new information that is not supported by the text." }

[ "\n- The DOCUMENT provides the genome size of the PEDV virus as ranging from approximately 26 to 32 kb.\n- The ANSWER states that the genome size ranges from 28 to 34 kb.\n" ]

{ "_id": 1501, "label": "FAIL", "text": " {\"REASONING\": [\n- The document describes a study that developed a mathematical model to assess the transmissibility of SARS-CoV-2 using a Reservoir-People (RP) transmission network model.\n- The answer correctly states that the transmissibility of SARS-CoV-2 might be higher than MERS in the Republic of Korea, similar to SARS, but lower than MERS in the Middle East countries based on the findings from the study.\n], \"SCORE\": \"PASS\"}" }

[ "\n- The document describes a study that developed a mathematical model to assess the transmissibility of SARS-CoV-2 using a Reservoir-People (RP) transmission network model.\n- The answer correctly states that the transmissibility of SARS-CoV-2 might be higher than MERS in the Republic of Korea, similar to SARS, but lower than MERS in the Middle East countries based on the findings from the study.\n" ]

{ "_id": 92, "label": "FAIL", "text": " {\"REASONING\": [\"The document provides information on the clinical attack rate of the 2009 H1N1 pandemic being 20% to 30% and the severity of the disease. However, it does not mention the specific clinical attack rate of 25%.\", \"The answer does not come from the document and offers new information beyond the context provided.\"], \"SCORE\": \"FAIL\"}" }

[ "\"The document provides information on the clinical attack rate of the 2009 H1N1 pandemic being 20% to 30% and the severity of the disease. However, it does not mention the specific clinical attack rate of 25%.\", \"The answer does not come from the document and offers new information beyond the context provided.\"" ]

{ "_id": 1839, "label": "FAIL", "text": " {\"REASONING\": [\"The document discusses the increasing abundance of affordable, sensitive, high-throughput genome sequencing technologies leading to a recent boom in metagenomics and the cataloguing of the microbiome of our world. However, the answer focuses only on personalized medicine and the human genome.\", \"The document also mentions the importance of these technologies in virus surveillance efforts and the discovery of new biological functions and processes that can be used in new therapies and biotechnologies.\", \"The answer does not mention the importance of these technologies in virus surveillance or the discovery of new biological functions and processes.\"], \"SCORE\": \"FAIL\"}" }

[ "\"The document discusses the increasing abundance of affordable, sensitive, high-throughput genome sequencing technologies leading to a recent boom in metagenomics and the cataloguing of the microbiome of our world. However, the answer focuses only on personalized medicine and the human genome.\", \"The document also mentions the importance of these technologies in virus surveillance efforts and the discovery of new biological functions and processes that can be used in new therapies and biotechnologies.\", \"The answer does not mention the importance of these technologies in virus surveillance or the discovery of new biological functions and processes.\"" ]

{ "_id": 764, "label": "PASS", "text": " {\"REASONING\": [\n- The document discusses the use of B. subtilis as a vaccine delivery system to induce mucosal immune responses against PEDV infection in piglets.\n- The document mentions that oral administration of B. subtilis can stimulate the release of cytokines, including IL-1β and IL-10, to improve the mucosal immune response to PEDV infection.\n], \"SCORE\": \"PASS\"}" }

[ "\n- The document discusses the use of B. subtilis as a vaccine delivery system to induce mucosal immune responses against PEDV infection in piglets.\n- The document mentions that oral administration of B. subtilis can stimulate the release of cytokines, including IL-1β and IL-10, to improve the mucosal immune response to PEDV infection.\n" ]

{ "_id": 215, "label": "PASS", "text": " {\"REASONING\": [\"The document provides detailed information about Human Metapneumovirus (HMPV), its genome structure, and its contribution to acute respiratory infections in Africa. The answer simply states the name of the virus, HMPV, without any additional information.\", \"The question asks for the cause of acute respiratory illness in young children, while the document provides information about HMPV and its association with acute respiratory infections in young children in Africa.\", \"The answer does not provide any new information beyond the context provided in the document.\"], \"SCORE\": \"PASS\"}" }

[ "\"The document provides detailed information about Human Metapneumovirus (HMPV), its genome structure, and its contribution to acute respiratory infections in Africa. The answer simply states the name of the virus, HMPV, without any additional information.\", \"The question asks for the cause of acute respiratory illness in young children, while the document provides information about HMPV and its association with acute respiratory infections in young children in Africa.\", \"The answer does not provide any new information beyond the context provided in the document.\"" ]

{ "_id": 1825, "label": "PASS", "text": " {\"REASONING\": [\"The document mentions the Roquin and Regnase families as examples of RBPs that control inflammatory factor expression. The answer correctly identifies these families as RBPs.\"], \"SCORE\": \"PASS\"}" }

[ "\"The document mentions the Roquin and Regnase families as examples of RBPs that control inflammatory factor expression. The answer correctly identifies these families as RBPs.\"" ]

{ "_id": 140, "label": "PASS", "text": " {\"REASONING\": [\"The answer does not directly address the question which asked about the survival advantage of EAP treatment in the study.\", \"The document describes that EAP treatment at a dose of 25 mg/kg body weight significantly improved survival rates of infected mice with a corresponding reduction of pulmonary viral load.\", \"However, the answer only mentions that EAP treatment did not provide a survival advantage.\"], \"SCORE\": \"FAIL\"}" }

[ "\"The answer does not directly address the question which asked about the survival advantage of EAP treatment in the study.\", \"The document describes that EAP treatment at a dose of 25 mg/kg body weight significantly improved survival rates of infected mice with a corresponding reduction of pulmonary viral load.\", \"However, the answer only mentions that EAP treatment did not provide a survival advantage.\"" ]

{ "_id": 1787, "label": "FAIL", "text": " {\"REASONING\": [\"The answer mentions two cases with pre-existing conditions, one obese and one with respiratory disease. The document reports seven cases with pre-existing conditions, five had no pre-existing conditions and two had pre-existing conditions, one obese and one with cardiac disease. The answer is not exactly faithful to the document but it is close and does not contradict it. The answer does not provide new information beyond the context provided in the document.\"], \"SCORE\": \"PASS\"}" }

[ "\"The answer mentions two cases with pre-existing conditions, one obese and one with respiratory disease. The document reports seven cases with pre-existing conditions, five had no pre-existing conditions and two had pre-existing conditions, one obese and one with cardiac disease. The answer is not exactly faithful to the document but it is close and does not contradict it. The answer does not provide new information beyond the context provided in the document.\"" ]

{ "_id": 218, "label": "PASS", "text": " {\"REASONING\": [\"The document describes HMPV as causing respiratory illness ranging from mild upper respiratory infection to bronchiolitis and pneumonia.\", \"The answer correctly identifies the range of respiratory illness caused by HMPV.\"], \"SCORE\": \"PASS\"}" }

[ "\"The document describes HMPV as causing respiratory illness ranging from mild upper respiratory infection to bronchiolitis and pneumonia.\", \"The answer correctly identifies the range of respiratory illness caused by HMPV.\"" ]

{ "_id": 152, "label": "FAIL", "text": " {\"REASONING\": [\"The document discusses the importance of studying antigen-specific B cell responses for developing vaccines and understanding autoimmune diseases. It mentions the discovery of broadly neutralizing antibodies against RSV and the development of stabilized versions of the RSV F protein in the pre-fusion conformation. The answer focuses on the pre-fusion conformation of the RSV F protein and its implications for vaccine development.\"], \"SCORE\": \"PASS\"}" }

[ "\"The document discusses the importance of studying antigen-specific B cell responses for developing vaccines and understanding autoimmune diseases. It mentions the discovery of broadly neutralizing antibodies against RSV and the development of stabilized versions of the RSV F protein in the pre-fusion conformation. The answer focuses on the pre-fusion conformation of the RSV F protein and its implications for vaccine development.\"" ]

{ "_id": 1501, "label": "PASS", "text": " {\"REASONING\": [\n- The document describes a study that developed a mathematical model to assess the transmissibility of SARS-CoV-2 using a Reservoir-People (RP) transmission network model.\n- The answer correctly states that the study found that the transmissibility of SARS-CoV-2 might be higher than MERS in the Middle East countries, similar to SARS, but lower than MERS in the Republic of Korea.\n], \"SCORE\": \"PASS\"}" }

[ "\n- The document describes a study that developed a mathematical model to assess the transmissibility of SARS-CoV-2 using a Reservoir-People (RP) transmission network model.\n- The answer correctly states that the study found that the transmissibility of SARS-CoV-2 might be higher than MERS in the Middle East countries, similar to SARS, but lower than MERS in the Republic of Korea.\n" ]

{ "_id": 1028, "label": "FAIL", "text": " {\"REASONING\": [\"The document does not provide any information about Mycobacterium leprae causing tuberculosis.\"], \"SCORE\": 0}" }

[ "\"The document does not provide any information about Mycobacterium leprae causing tuberculosis.\"" ]

{ "_id": 329, "label": "PASS", "text": " {\"REASONING\": [\"The answer directly addresses the question and only contains information from the document.\", \"The document describes a study evaluating the anti-influenza A (H2N2) virus activity of patchouli alcohol.\", \"The answer does not offer new information beyond the context provided in the document.\", \"The answer does not contradict information provided in the document.\"], \"SCORE\": \"PASS\"}" }

[ "\"The answer directly addresses the question and only contains information from the document.\", \"The document describes a study evaluating the anti-influenza A (H2N2) virus activity of patchouli alcohol.\", \"The answer does not offer new information beyond the context provided in the document.\", \"The answer does not contradict information provided in the document.\"" ]

{ "_id": 1937, "label": "FAIL", "text": " {\"REASONING\": [\n- The document describes the S1 subunit of the spike glycoprotein of 2019-nCoV as containing a signal peptide, followed by an N-terminal domain (NTD) and receptor-binding domain (RBD).\n- The answer correctly identifies the presence of a signal peptide, N-terminal domain, and receptor-binding domain in the S1 subunit of the spike glycoprotein of 2019-nCoV.\n- However, the answer incorrectly states that the S2 subunit contains a nuclear localization signal (NLS). According to the document, the S2 subunit of 2019-nCoV is highly conserved and shares 99% identity with those of the two bat SARS-like CoVs and human SARS-CoV, and it does not contain a nuclear localization signal.\n], \"SCORE\": 0.8}\n\nThe answer receives a score of 0.8 because it correctly identifies the presence of a signal peptide, N-terminal domain, and receptor-binding domain in the S1 subunit of the spike glycoprotein of 2019-nCoV, but it incorrectly states that the S2 subunit contains a nuclear localization signal." }

[ "\n- The document describes the S1 subunit of the spike glycoprotein of 2019-nCoV as containing a signal peptide, followed by an N-terminal domain (NTD) and receptor-binding domain (RBD).\n- The answer correctly identifies the presence of a signal peptide, N-terminal domain, and receptor-binding domain in the S1 subunit of the spike glycoprotein of 2019-nCoV.\n- However, the answer incorrectly states that the S2 subunit contains a nuclear localization signal (NLS). According to the document, the S2 subunit of 2019-nCoV is highly conserved and shares 99% identity with those of the two bat SARS-like CoVs and human SARS-CoV, and it does not contain a nuclear localization signal.\n" ]

{ "_id": 1763, "label": "FAIL", "text": " {\"REASONING\": [\"The document does not provide the exact date when the Chinese authorities shared the sequence of the novel coronavirus with the world. It only mentions that it was on or around 12 January 2020.\", \"The answer, however, states that the Chinese authorities shared the sequence of the novel coronavirus on 13 January 2020.\", \"Therefore, the answer contradicts the information provided in the document.\"], \"SCORE\": \"FAIL\"}" }

[ "\"The document does not provide the exact date when the Chinese authorities shared the sequence of the novel coronavirus with the world. It only mentions that it was on or around 12 January 2020.\", \"The answer, however, states that the Chinese authorities shared the sequence of the novel coronavirus on 13 January 2020.\", \"Therefore, the answer contradicts the information provided in the document.\"" ]

{ "_id": 73, "label": "PASS", "text": " {\n\"REASONING\": [\n\"The answer only mentions the name of the compounds and does not provide any new information or contradict the information provided in the document.\",\n\"The document discusses the design, synthesis, evaluation, and thermodynamics of 1-substituted pyridylimidazo[1,5-a]pyridine derivatives as potent and novel cysteine protease inhibitors.\",\n\"The answer is faithful to the contents of the document as it only repeats the name of the compounds mentioned in the document.\",\n\"The answer does not offer any new information beyond the context provided in the document.\",\n\"The answer does not contradict any information provided in the document.\"\n],\n\"SCORE\": \"PASS\"\n}" }

[ "\n\"The answer only mentions the name of the compounds and does not provide any new information or contradict the information provided in the document.\",\n\"The document discusses the design, synthesis, evaluation, and thermodynamics of 1-substituted pyridylimidazo[1,5-a" ]

{ "_id": 100, "label": "PASS", "text": " {\"REASONING\": [\"The answer 'amplification step' does not provide any new information beyond the context of the document.\", \"The document describes the PCR amplification steps for detecting respiratory viruses in the EBC samples.\", \"The answer is a specific step mentioned in the document.\"], \"SCORE\": \"PASS\"}" }

[ "\"The answer 'amplification step' does not provide any new information beyond the context of the document.\", \"The document describes the PCR amplification steps for detecting respiratory viruses in the EBC samples.\", \"The answer is a specific step mentioned in the document.\"" ]

{ "_id": 1498, "label": "FAIL", "text": " {\"REASONING\": [\"The document provides the value of R0 for SARS-CoV-2 estimated to be 2.30 from reservoir to person and 3.58 from person to person. The answer does not match any of these values.\", \"The answer offers a new value for R0 that is not provided in the document.\"], \"SCORE\": \"FAIL\"}" }

[ "\"The document provides the value of R0 for SARS-CoV-2 estimated to be 2.30 from reservoir to person and 3.58 from person to person. The answer does not match any of these values.\", \"The answer offers a new value for R0 that is not provided in the document.\"" ]

{ "_id": 57, "label": "FAIL", "text": " {\"REASONING\": [\n- The document provides the sample size as 52500 adults, but the answer provides 53500.\n], \"SCORE\": \"FAIL\"}" }

[ "\n- The document provides the sample size as 52500 adults, but the answer provides 53500.\n" ]

{ "_id": 378, "label": "FAIL", "text": " {\"REASONING\": [\"The document mentions that the incubation period for arenavirus infections is 1-3 weeks. The answer of 2-4 weeks is within this range.\"], \"SCORE\": \"PASS\"}" }

[ "\"The document mentions that the incubation period for arenavirus infections is 1-3 weeks. The answer of 2-4 weeks is within this range.\"" ]

{ "_id": 511, "label": "PASS", "text": " {\"REASONING\": [\n- The document provides information about the distribution of coronaviruses among humans, birds, livestock, mice, bats, and other wild animals.\n- The answer correctly repeats the information provided in the document.\n], \"SCORE\": \"PASS\"}" }

[ "\n- The document provides information about the distribution of coronaviruses among humans, birds, livestock, mice, bats, and other wild animals.\n- The answer correctly repeats the information provided in the document.\n" ]

{ "_id": 523, "label": "FAIL", "text": " {\"REASONING\": [\"The document states that the FPA optimization algorithm is inspired by the flower pollination process of the flowering plants.\"], \"SCORE\": \"PASS\"}" }

[ "\"The document states that the FPA optimization algorithm is inspired by the flower pollination process of the flowering plants.\"" ]

{ "_id": 509, "label": "PASS", "text": " {\"REASONING\": [\n- The answer \"showed good performances\" is a summary statement of the document's content regarding the outcomes of testing the FPASSA-ANFIS model on the COVID-19 dataset and two influenza datasets.\n- The document provides evidence of the FPASSA-ANFIS model's good performance through comparison with several existing models and evaluation metrics such as Mean Absolute Percentage Error (MAPE), Root Mean Squared Relative Error (RMSRE), coefficient of determination (R2), and computing time.\n- The answer does not offer new information beyond the context provided in the document.\n], \"SCORE\": \"PASS\"}" }

[ "\n- The answer \"showed good performances\" is a summary statement of the document's content regarding the outcomes of testing the FPASSA-ANFIS model on the COVID-19 dataset and two influenza datasets.\n- The document provides evidence of the FPASSA-ANFIS model's good performance through comparison with several existing models and evaluation metrics such as Mean Absolute Percentage Error (MAPE), Root Mean Squared Relative Error (RMSRE), coefficient of determination (R2), and computing time.\n- The answer does not offer new information beyond the context provided in the document.\n" ]

{ "_id": 1476, "label": "PASS", "text": " {\"REASONING\": [\"The document mentions that preparedness plans were widely elaborated and later evaluated in neighbouring sub-Saharan countries, North America, and Europe.\"], \"SCORE\": \"PASS\"}" }

[ "\"The document mentions that preparedness plans were widely elaborated and later evaluated in neighbouring sub-Saharan countries, North America, and Europe.\"" ]

{ "_id": 1921, "label": "PASS", "text": " {\"REASONING\": [\"The document states that SARS-CoV and MERS-CoV have likely originated from bats and then jumped into another amplification mammalian host (the Himalayan palm civet for SARS-CoV and the dromedary camel for MERS-CoV).\", \"The answer is consistent with the information provided in the document.\"], \"SCORE\": \"PASS\"}" }

[ "\"The document states that SARS-CoV and MERS-CoV have likely originated from bats and then jumped into another amplification mammalian host (the Himalayan palm civet for SARS-CoV and the dromedary camel for MERS-CoV).\", \"The answer is consistent with the information provided in the document.\"" ]

{ "_id": 1835, "label": "PASS", "text": " {\"REASONING\": [\"The document mentions that Furin is a conserved proprotein convertase widely implicated in human health and disease. The answer correctly identifies Furin as a conserved proprotein convertase.\"], \"SCORE\": \"PASS\"}" }

[ "\"The document mentions that Furin is a conserved proprotein convertase widely implicated in human health and disease. The answer correctly identifies Furin as a conserved proprotein convertase.\"" ]

{ "_id": 926, "label": "PASS", "text": " {\"REASONING\": [\n- The document discusses the role of comorbidities in the severity of MERS-CoV and SARS-CoV infections, specifically mentioning obesity, immunocompromised, diabetes, and cardiac disease as risk factors for more severe outcomes in MERS-CoV patients.\n- The answer correctly identifies these same comorbidities as factors that influence MERS-CoV outcomes.\n], \"SCORE\": \"PASS\"}" }

[ "\n- The document discusses the role of comorbidities in the severity of MERS-CoV and SARS-CoV infections, specifically mentioning obesity, immunocompromised, diabetes, and cardiac disease as risk factors for more severe outcomes in MERS-CoV patients.\n- The answer correctly identifies these same comorbidities as factors that influence MERS-CoV outcomes.\n" ]

{ "_id": 1969, "label": "FAIL", "text": " {\"REASONING\": [\"The document mentions that the World Health Organization (WHO) declared 2019-nCoV to be a Public Health Emergency of International Concern (PHEIC) on January 30, 2020.\", \"The answer correctly states the date as January 31, 2020, which is not mentioned in the document.\"], \"SCORE\": \"FAIL\"}" }

[ "\"The document mentions that the World Health Organization (WHO) declared 2019-nCoV to be a Public Health Emergency of International Concern (PHEIC) on January 30, 2020.\", \"The answer correctly states the date as January 31, 2020, which is not mentioned in the document.\"" ]

{ "_id": 1747, "label": "PASS", "text": " {\"REASONING\": [\"The answer correctly states that the current strategy for the detection of viral RNA in oral swabs used for 2019-nCoV diagnosis is not perfect and that the virus may be present in anal swabs or blood of patients when oral swabs detection is negative.\", \"The document provides evidence that 2019-nCoV was found in anal swabs and blood of patients, even when oral swabs were negative.\"], \"SCORE\": \"PASS\"}" }

[ "\"The answer correctly states that the current strategy for the detection of viral RNA in oral swabs used for 2019-nCoV diagnosis is not perfect and that the virus may be present in anal swabs or blood of patients when oral swabs detection is negative.\", \"The document provides evidence that 2019-nCoV was found in anal swabs and blood of patients, even when oral swabs were negative.\"" ]

{ "_id": 1789, "label": "FAIL", "text": " {\"REASONING\": [\"The document describes that all hospitalised cases had a benign clinical evolution except for four cases, two reported in Italy and two reported in France, all of whom developed viral pneumonia. The answer, however, states that there were five cases with a non-benign clinical evolution. This contradicts the information provided in the document.\"], \"SCORE\": \"FAIL\"}" }

[ "\"The document describes that all hospitalised cases had a benign clinical evolution except for four cases, two reported in Italy and two reported in France, all of whom developed viral pneumonia. The answer, however, states that there were five cases with a non-benign clinical evolution. This contradicts the information provided in the document.\"" ]

{ "_id": 1790, "label": "PASS", "text": " {\"REASONING\": [\"The answer directly quotes information from the document regarding the three cases who were admitted to intensive care, required respiratory support, and one French case died.\", \"The answer does not offer new information beyond the context provided in the document.\", \"The answer is faithful to the contents of the document.\"], \"SCORE\": \"PASS\"}" }

[ "\"The answer directly quotes information from the document regarding the three cases who were admitted to intensive care, required respiratory support, and one French case died.\", \"The answer does not offer new information beyond the context provided in the document.\", \"The answer is faithful to the contents of the document.\"" ]

{ "_id": 1788, "label": "FAIL", "text": " {\"REASONING\": [\"The document reports that there were four cases of COVID-19 who developed viral pneumonia, two in Italy and two in France. The answer correctly identifies the number and countries of these cases.\"], \"SCORE\": \"PASS\"}" }

[ "\"The document reports that there were four cases of COVID-19 who developed viral pneumonia, two in Italy and two in France. The answer correctly identifies the number and countries of these cases.\"" ]

{ "_id": 1913, "label": "PASS", "text": " {\"REASONING\": [\"The answer correctly states the percentage of nucleotide identity between the genome of 2019-nCoV and those of bat SARS-like-CoVZXC21 and human SARS-CoV.\",\n\"The answer correctly states that the phylogenetic trees of the orf1a/b, Spike, Envelope, Membrane and Nucleoprotein of 2019-nCoV cluster closely with those of the bat, civet and human SARS coronaviruses.\"],\n\"SCORE\": \"PASS\"}" }

[ "\"The answer correctly states the percentage of nucleotide identity between the genome of 2019-nCoV and those of bat SARS-like-CoVZXC21 and human SARS-CoV.\",\n\"The answer correctly states that the phylogenetic trees of the orf1a/b, Spike, Envelope, Membrane and Nucleoprotein of 2019-nCoV cluster closely with those of the bat, civet and human SARS coronaviruses.\"" ]

{ "_id": 1999, "label": "PASS", "text": " {\"REASONING\": [\n- The document discusses the challenges of implementing standard public health measures in complex humanitarian crises, including limited resources, frequent displacement, and inadequate infrastructure.\n- The document emphasizes the importance of crisis-affected community engagement in pandemic planning to maximize the effectiveness of interventions.\n- The answer is faithful to the contents of the document as it accurately reflects the importance of crisis-affected community engagement in pandemic planning as stated in the document.\n], \"SCORE\": \"PASS\"}" }

[ "\n- The document discusses the challenges of implementing standard public health measures in complex humanitarian crises, including limited resources, frequent displacement, and inadequate infrastructure.\n- The document emphasizes the importance of crisis-affected community engagement in pandemic planning to maximize the effectiveness of interventions.\n- The answer is faithful to the contents of the document as it accurately reflects the importance of crisis-affected community engagement in pandemic planning as stated in the document.\n" ]

{ "_id": 197, "label": "FAIL", "text": " {\"REASONING\": [\"The document does not provide any information about a deficiency of ROS in the context of the question or the study.\", \"The answer contradicts the information in the document, which states that Fe participates in redox reactions leading to the production of ROSs and thus causing oxidative stress.\"], \"SCORE\": \"FAIL\"}" }

[ "\"The document does not provide any information about a deficiency of ROS in the context of the question or the study.\", \"The answer contradicts the information in the document, which states that Fe participates in redox reactions leading to the production of ROSs and thus causing oxidative stress.\"" ]

{ "_id": 1314, "label": "PASS", "text": " {\"REASONING\": [\n- The document provides information on the correlation between daily air travel volume and imported-and-reported cases of SARS-CoV-2 infection among high surveillance locations.\n- The answer simply states that daily air travel volume is a factor that positively correlates with imported-and-reported cases of SARS-CoV-2 infection.\n- The answer does not provide any new information beyond the context provided in the document.\n], \"SCORE\": \"PASS\"}" }

[ "\n- The document provides information on the correlation between daily air travel volume and imported-and-reported cases of SARS-CoV-2 infection among high surveillance locations.\n- The answer simply states that daily air travel volume is a factor that positively correlates with imported-and-reported cases of SARS-CoV-2 infection.\n- The answer does not provide any new information beyond the context provided in the document.\n" ]

{ "_id": 166, "label": "PASS", "text": " {\"REASONING\": [\"The document describes the antiviral activity of gemcitabine against a broad range of viruses including MERS-CoV, SARS-CoV, ZIKV, HCV, poliovirus, influenza A virus, HIV, and enteroviruses. The answer correctly lists these viruses.\"], \"SCORE\": \"PASS\"}" }

[ "\"The document describes the antiviral activity of gemcitabine against a broad range of viruses including MERS-CoV, SARS-CoV, ZIKV, HCV, poliovirus, influenza A virus, HIV, and enteroviruses. The answer correctly lists these viruses.\"" ]

{ "_id": 424, "label": "PASS", "text": " {\"REASONING\": [\"The document provides the IC50 value of Cu(BrHAP)2 compound on HT-29 cells, which is 2.87 μg/ml after 72 hours of treatment. The document also mentions that HT-29 cells treated with Cu(BrHAP)2 compound underwent apoptosis death, as exhibited by a progressive elevation in the proportion of the G1 cell population and significant elevation in ROS production, cytochrome c release, and caspases 3/7 and 9 activation. The document does not mention the 5-year survival rate for colorectal cancer patients. However, it does provide information about the anticancer potential of Cu(BrHAP)2 compound against HT-29 colon cancer cells. Therefore, the answer is not faithful to the document as it provides new information not present in the document.\"], \"SCORE\": \"FAIL\"}" }

[ "\"The document provides the IC50 value of Cu(BrHAP)2 compound on HT-29 cells, which is 2.87 μg/ml after 72 hours of treatment. The document also mentions that HT-29 cells treated with Cu(BrHAP)2 compound underwent apoptosis death, as exhibited by a progressive elevation in the proportion of the G1 cell population and significant elevation in ROS production, cytochrome c release, and caspases 3/7 and 9 activation. The document does not mention the 5-year survival rate for colorectal cancer patients. However, it does provide information about the anticancer potential of Cu(BrHAP)2 compound against HT-29 colon cancer cells. Therefore, the answer is not faithful to the document as it provides new information not present in the document.\"" ]

{ "_id": 820, "label": "PASS", "text": " {\"REASONING\": [\"The answer correctly lists the four most used DNA-based techniques for virus discovery in stool samples: Universal primer-PCR, Random priming-based PCR, Virus Discovery cDNA, Amplified Fragment Length Polymorphism (VIDISCA), and Sequence-Independent Single Primer Amplification (SISPA).\"], \"SCORE\": \"PASS\"}" }

[ "\"The answer correctly lists the four most used DNA-based techniques for virus discovery in stool samples: Universal primer-PCR, Random priming-based PCR, Virus Discovery cDNA, Amplified Fragment Length Polymorphism (VIDISCA), and Sequence-Independent Single Primer Amplification (SISPA).\"" ]

{ "_id": 1826, "label": "PASS", "text": " {\"REASONING\": [\n- The document discusses the roles of the Roquin and Regnase families in post-transcriptionally controlling inflammatory factor expression by promoting or effecting degradation of mRNAs harbouring stem-loop structures.\n- The answer directly quotes and summarizes this information from the document.\n], \"SCORE\": \"PASS\"}" }

[ "\n- The document discusses the roles of the Roquin and Regnase families in post-transcriptionally controlling inflammatory factor expression by promoting or effecting degradation of mRNAs harbouring stem-loop structures.\n- The answer directly quotes and summarizes this information from the document.\n" ]

{ "_id": 1778, "label": "FAIL", "text": " {\"REASONING\": [\"The document provides the mean number of days to hospitalisation as 2.5 days for cases imported from China and 4.6 days for those infected in Europe.\", \"The answer incorrectly states the mean number of days to hospitalisation for cases imported from China as 3.5 days instead of 2.5 days.\"], \"SCORE\": \"FAIL\"}" }

[ "\"The document provides the mean number of days to hospitalisation as 2.5 days for cases imported from China and 4.6 days for those infected in Europe.\", \"The answer incorrectly states the mean number of days to hospitalisation for cases imported from China as 3.5 days instead of 2.5 days.\"" ]

{ "_id": 1461, "label": "FAIL", "text": " {\"REASONING\": [\"The document does not provide information about when the novel Coronavirus was first reported.\", \"The answer 'November 2019' is not mentioned in the document.\", \"Therefore, the answer is not faithful to the contents of the document.\"], \"SCORE\": \"FAIL\"}" }

[ "\"The document does not provide information about when the novel Coronavirus was first reported.\", \"The answer 'November 2019' is not mentioned in the document.\", \"Therefore, the answer is not faithful to the contents of the document.\"" ]

{ "_id": 1944, "label": "FAIL", "text": " {\"REASONING\": [\"The document describes that most bat SARSr-CoVs have two stretches of deletions in the spike receptor binding domain (RBD) when compared with that of human SARS-CoV, but the answer specifically mentions the spike S2 subunit having these deletions.\"], \"SCORE\": \"FAIL\"}" }

[ "\"The document describes that most bat SARSr-CoVs have two stretches of deletions in the spike receptor binding domain (RBD) when compared with that of human SARS-CoV, but the answer specifically mentions the spike S2 subunit having these deletions.\"" ]

{ "_id": 95, "label": "FAIL", "text": " {\"REASONING\": [\"The document does not provide any information about the isolation of gastrointestinal viruses using exhaled breath condensate.\"], \"SCORE\": \"FAIL\"}" }

[ "\"The document does not provide any information about the isolation of gastrointestinal viruses using exhaled breath condensate.\"" ]

{ "_id": 1211, "label": "FAIL", "text": " {\"REASONING\": [\"The document provides detailed information about the clinical features and pathogenesis of CHIKV. The answer directly summarizes the main topic of the document. The answer does not offer new information or contradict any information provided in the document.\"], \"SCORE\": \"PASS\"}" }

[ "\"The document provides detailed information about the clinical features and pathogenesis of CHIKV. The answer directly summarizes the main topic of the document. The answer does not offer new information or contradict any information provided in the document.\"" ]

{ "_id": 1768, "label": "FAIL", "text": " {\"REASONING\": [\"The answer correctly states the overall aim of surveillance during the early stages of COVID-19 in Europe. It focuses on identifying and following up cases linked to affected countries to minimize onward transmission. This aligns with the information provided in the document.\"], \"SCORE\": \"PASS\"}" }

[ "\"The answer correctly states the overall aim of surveillance during the early stages of COVID-19 in Europe. It focuses on identifying and following up cases linked to affected countries to minimize onward transmission. This aligns with the information provided in the document.\"" ]

{ "_id": 910, "label": "PASS", "text": " {\"REASONING\": [\n- The document mentions that both SARS-CoV and MERS-CoV result in severe lung pathology and many infected patients have acute lung injury (ALI)\n], \"SCORE\": \"PASS\"}" }

[ "\n- The document mentions that both SARS-CoV and MERS-CoV result in severe lung pathology and many infected patients have acute lung injury (ALI)\n" ]

{ "_id": 1030, "label": "FAIL", "text": " {\"REASONING\": [\"The document does not provide the number of new tuberculosis cases each year worldwide.\"], \"SCORE\": 0}" }

[ "\"The document does not provide the number of new tuberculosis cases each year worldwide.\"" ]

{ "_id": 902, "label": "PASS", "text": " {\"REASONING\": [\"The document mentions that SARS-CoV and MERS-CoV are coronaviruses. The answer correctly identifies that both viruses belong to the coronavirus family.\"], \"SCORE\": \"PASS\"}" }

[ "\"The document mentions that SARS-CoV and MERS-CoV are coronaviruses. The answer correctly identifies that both viruses belong to the coronavirus family.\"" ]

{ "_id": 1206, "label": "FAIL", "text": " {\"REASONING\": [\n- The document states that CHIKV is maintained in a sylvatic cycle among forest-dwelling Aedes spp. mosquitoes, wild primates, squirrels, birds, and rodents.\n- The answer correctly identifies forest-dwelling Aedes spp. mosquitoes as the vectors for CHIKV in the sylvatic cycle.\n- The answer incorrectly includes bats in the list of hosts for CHIKV, but this error does not significantly alter the overall accuracy of the answer.\n], \"SCORE\": \"PASS\"}" }

[ "\n- The document states that CHIKV is maintained in a sylvatic cycle among forest-dwelling Aedes spp. mosquitoes, wild primates, squirrels, birds, and rodents.\n- The answer correctly identifies forest-dwelling Aedes spp. mosquitoes as the vectors for CHIKV in the sylvatic cycle.\n- The answer incorrectly includes bats in the list of hosts for CHIKV, but this error does not significantly alter the overall accuracy of the answer.\n" ]

{ "_id": 634, "label": "PASS", "text": " {\"REASONING\": [\"The answer only mentions that the authors of a controversial report have withdrawn it, without providing any information about the report's contents or the reason for the withdrawal. The answer does not address the question about what happened to the report with initial claims regarding the laboratory origin of SARS-CoV-2.\", \"The document provides extensive information about the scientific evidence against the laboratory origin of SARS-CoV-2, including the lack of a logical targeted pattern in the viral sequences and the absence of a close relative in a wildlife species. The answer does not mention any of this evidence.\"], \"SCORE\": \"FAIL\"}" }

[ "\"The answer only mentions that the authors of a controversial report have withdrawn it, without providing any information about the report's contents or the reason for the withdrawal. The answer does not address the question about what happened to the report with initial claims regarding the laboratory origin of SARS-CoV-2.\", \"The document provides extensive information about the scientific evidence against the laboratory origin of SARS-CoV-2, including the lack of a logical targeted pattern in the viral sequences and the absence of a close relative in a wildlife species. The answer does not mention any of this evidence.\"" ]

{ "_id": 1836, "label": "FAIL", "text": " {\"REASONING\": [\"The document mentions that Furin and other PCSK family members are implicated in immune regulation, cancer, and the entry, maturation or release of a broad array of evolutionarily diverse viruses including HPV, IAV, EboV, DenV, and HIV. The answer correctly lists these viruses and the roles of Furin in them.\"], \"SCORE\": \"PASS\"}" }

[ "\"The document mentions that Furin and other PCSK family members are implicated in immune regulation, cancer, and the entry, maturation or release of a broad array of evolutionarily diverse viruses including HPV, IAV, EboV, DenV, and HIV. The answer correctly lists these viruses and the roles of Furin in them.\"" ]

{ "_id": 125, "label": "PASS", "text": " {\"REASONING\": [\"The answer correctly identifies incomplete or inadequate vaccination as a major preventable risk factor for childhood pneumonia. It also correctly lists low birth weight and lack of exclusive breastfeeding as risk factors for severe pneumonia in both low-and middle-income countries and high-income countries. The information provided in the answer is faithful to the contents of the DOCUMENT.\"], \"SCORE\": \"PASS\"}" }

[ "\"The answer correctly identifies incomplete or inadequate vaccination as a major preventable risk factor for childhood pneumonia. It also correctly lists low birth weight and lack of exclusive breastfeeding as risk factors for severe pneumonia in both low-and middle-income countries and high-income countries. The information provided in the answer is faithful to the contents of the DOCUMENT.\"" ]

{ "_id": 615, "label": "FAIL", "text": " {\"REASONING\": [\"The document states that the SARS-CoV-2 genome sequence has ∼80% identity with SARS-CoV, but the answer only mentions ∼90% identity.\", \"The document also mentions that the SARS-CoV-2 genome sequence is most similar to some bat beta-coronaviruses, with the highest being >96% identity.\", \"Therefore, the answer is not faithful to the contents of the document.\"], \"SCORE\": \"FAIL\"}" }

[ "\"The document states that the SARS-CoV-2 genome sequence has ∼80% identity with SARS-CoV, but the answer only mentions ∼90% identity.\", \"The document also mentions that the SARS-CoV-2 genome sequence is most similar to some bat beta-coronaviruses, with the highest being >96% identity.\", \"Therefore, the answer is not faithful to the contents of the document.\"" ]

{ "_id": 1756, "label": "PASS", "text": " {\"REASONING\": [\"The answer accurately lists the data that was collected as stated in the document.\", \"The document mentions that data was collected on demographics, history of recent travel to affected areas, close contact with a probable or confirmed COVID-19 case, underlying conditions, signs and symptoms of disease at onset, type of specimens from which the virus was detected, and clinical outcome.\"], \"SCORE\": \"PASS\"}" }

[ "\"The answer accurately lists the data that was collected as stated in the document.\", \"The document mentions that data was collected on demographics, history of recent travel to affected areas, close contact with a probable or confirmed COVID-19 case, underlying conditions, signs and symptoms of disease at onset, type of specimens from which the virus was detected, and clinical outcome.\"" ]

{ "_id": 301, "label": "FAIL", "text": " {\"REASONING\": [\"The document discusses the development of a predictor called iNR-Drug for identifying interactions between nuclear receptors and drugs. The predictor uses a combination of molecular fingerprints and pseudo amino acid composition to represent the drug and nuclear receptor, respectively. The document mentions that nuclear receptors are associated with various major diseases such as cancer, diabetes, inflammatory disease, and osteoporosis, but it does not directly state that GPCRs are associated with these diseases. However, it does mention that nuclear receptors are major drug targets along with GPCRs and other proteins. Therefore, the answer is not a direct answer to the question, but it is related to the topic of the document.\"], \"SCORE\": \"FAIL\"}" }

[ "\"The document discusses the development of a predictor called iNR-Drug for identifying interactions between nuclear receptors and drugs. The predictor uses a combination of molecular fingerprints and pseudo amino acid composition to represent the drug and nuclear receptor, respectively. The document mentions that nuclear receptors are associated with various major diseases such as cancer, diabetes, inflammatory disease, and osteoporosis, but it does not directly state that GPCRs are associated with these diseases. However, it does mention that nuclear receptors are major drug targets along with GPCRs and other proteins. Therefore, the answer is not a direct answer to the question, but it is related to the topic of the document.\"" ]

{ "_id": 904, "label": "FAIL", "text": " {\"REASONING\": [\"The document states that SARS-CoV was first identified in 2003, not 2002.\"], \"SCORE\": \"FAIL\"}" }

[ "\"The document states that SARS-CoV was first identified in 2003, not 2002.\"" ]

{ "_id": 326, "label": "FAIL", "text": " {\"REASONING\": [\"The document describes that the vaccine contains type 2 strain, not type 1.\"], \"SCORE\": \"FAIL\"}" }

[ "\"The document describes that the vaccine contains type 2 strain, not type 1.\"" ]

{ "_id": 254, "label": "FAIL", "text": " {\"REASONING\": [\"The document describes a case series of seven patients with MEWDS who underwent serological testing. The answer correctly identifies serological testing as a diagnostic method for MEWDS. However, the document also mentions that the serology testing yielded only an elevated titer of IgG to VZV, which is not sufficient to make any generalization about the findings. Therefore, the answer is faithful to the document in identifying serological testing as a method, but it does not provide new or contradictory information.\"], \"SCORE\": \"PASS\"}" }

[ "\"The document describes a case series of seven patients with MEWDS who underwent serological testing. The answer correctly identifies serological testing as a diagnostic method for MEWDS. However, the document also mentions that the serology testing yielded only an elevated titer of IgG to VZV, which is not sufficient to make any generalization about the findings. Therefore, the answer is faithful to the document in identifying serological testing as a method, but it does not provide new or contradictory information.\"" ]

{ "_id": 190, "label": "FAIL", "text": " {\"REASONING\": [\"The document does not mention that the kidney produces hepcidin.\"], \"SCORE\": \"FAIL\"}" }

[ "\"The document does not mention that the kidney produces hepcidin.\"" ]

{ "_id": 620, "label": "PASS", "text": " {\"REASONING\": [\"The document provides no information about the construction of a chimeric CoV with a bat CoV S gene (SHC014) in the backbone of a SARS CoV that has adapted to infect mice (MA15) and is capable of infecting human cells. This information is mentioned in the answer but not in the document.\"], \"SCORE\": \"FAIL\"}" }

[ "\"The document provides no information about the construction of a chimeric CoV with a bat CoV S gene (SHC014) in the backbone of a SARS CoV that has adapted to infect mice (MA15) and is capable of infecting human cells. This information is mentioned in the answer but not in the document.\"" ]

{ "_id": 1027, "label": "PASS", "text": " {\"REASONING\": [\"The document discusses the role of MAPK phosphatase-1 (MKP-1) in regulating MAPK activity and its effect on cytokine expression, specifically in response to mycobacterial infection. The answer simply states the name of the protein, MAPK phosphatase-1, without providing any additional context or information. Therefore, the answer is not faithful to the contents of the document as it does not provide any information beyond what is already stated in the question.\"], \"SCORE\": \"FAIL\"}" }

[ "\"The document discusses the role of MAPK phosphatase-1 (MKP-1) in regulating MAPK activity and its effect on cytokine expression, specifically in response to mycobacterial infection. The answer simply states the name of the protein, MAPK phosphatase-1, without providing any additional context or information. Therefore, the answer is not faithful to the contents of the document as it does not provide any information beyond what is already stated in the question.\"" ]

{ "_id": 633, "label": "PASS", "text": " {\"REASONING\": [\n- The answer directly quotes the content of the document regarding the rebuttal paper led by Dr. Feng Gao and the findings about the lack of HIV-1 specific insertions in SARS-CoV-2.\n], \"SCORE\": \"PASS\"}" }

[ "\n- The answer directly quotes the content of the document regarding the rebuttal paper led by Dr. Feng Gao and the findings about the lack of HIV-1 specific insertions in SARS-CoV-2.\n" ]

{ "_id": 576, "label": "FAIL", "text": " {\n\"REASONING\": [\n\"The document describes a retrospective study using nasal swabs collected by sentinel GPs from ILI patients in 2011 and 2012.\",\n\"The answer mentions nasal swabs collected by sentinel GPs from ILI patients in 2010 and 2011.\",\n\"The discrepancy between the document and the answer is the year of the study.\",\n\"The answer does not contradict the information provided in the document.\",\n\"The answer does not offer new information beyond the context provided in the document.\"\n],\n\"SCORE\": \"FAIL\"\n}" }

[ "\n\"The document describes a retrospective study using nasal swabs collected by sentinel GPs from ILI patients in 2011 and 2012.\",\n\"The answer mentions nasal swabs collected by sentinel GPs from ILI patients in 2010 and 2011.\",\n\"The discrepancy between the document and the answer is the year of the study.\",\n\"The answer does not contradict the information provided in the document.\",\n\"The answer does not offer new information beyond the context provided in the document.\"\n" ]

{ "_id": 209, "label": "FAIL", "text": " {\"REASONING\": [\"The document does not provide the percentage of patients who were positive for HBoV1 infection that is exactly equal to the answer. The document states that 2.2% of patients were positive for HBoV1 infection.\"], \"SCORE\": \"FAIL\"}" }

[ "\"The document does not provide the percentage of patients who were positive for HBoV1 infection that is exactly equal to the answer. The document states that 2.2% of patients were positive for HBoV1 infection.\"" ]

{ "_id": 1303, "label": "FAIL", "text": " {\"REASONING\": [\"The document clearly states that SARS-CoV-2 is a betacoronavirus.\"], \"SCORE\": \"FAIL\"}" }

[ "\"The document clearly states that SARS-CoV-2 is a betacoronavirus.\"" ]

{ "_id": 1851, "label": "FAIL", "text": " {\"REASONING\": [\"The ANSWER focuses on 'durable international relationships' but the DOCUMENT mentions this concept in relation to delivering priority outcomes, not focusing on a single area of expertise.\"], \"SCORE\": \"FAIL\"}" }

[ "\"The ANSWER focuses on 'durable international relationships' but the DOCUMENT mentions this concept in relation to delivering priority outcomes, not focusing on a single area of expertise.\"" ]

{ "_id": 1962, "label": "PASS", "text": " {\"REASONING\": [\"The answer correctly states that previous studies have shown smokers are more likely to contract influenza and have more severe symptoms.\", \"The answer also correctly states that smokers had higher mortality in the previous MERS-CoV outbreak.\"], \"SCORE\": \"PASS\"}" }

[ "\"The answer correctly states that previous studies have shown smokers are more likely to contract influenza and have more severe symptoms.\", \"The answer also correctly states that smokers had higher mortality in the previous MERS-CoV outbreak.\"" ]

{ "_id": 202, "label": "PASS", "text": " {\"REASONING\": [\n- The document describes RANBP2 as a nuclear pore protein with roles in intracellular protein trafficking or energy maintenance and homeostasis of neuronal cells.\n- The answer correctly identifies these roles without adding new information.\n], \"SCORE\": \"PASS\"}" }

[ "\n- The document describes RANBP2 as a nuclear pore protein with roles in intracellular protein trafficking or energy maintenance and homeostasis of neuronal cells.\n- The answer correctly identifies these roles without adding new information.\n" ]

{ "_id": 389, "label": "FAIL", "text": " {\"REASONING\": [\"The document provides the mean duration from the first positive CXR to bilateral multilobar lung infiltrates as 4.8 days.\"], \"SCORE\": \"PASS\"}" }

[ "\"The document provides the mean duration from the first positive CXR to bilateral multilobar lung infiltrates as 4.8 days.\"" ]

{ "_id": 901, "label": "FAIL", "text": " {\"REASONING\": [\n- The answer correctly states that a host's ability to return to a state of health after an infection is an important aspect of disease resilience.\n- The document also discusses this concept, specifically in the context of severe acute respiratory syndrome coronavirus and Middle East respiratory syndrome coronavirus infections.\n], \"SCORE\": \"PASS\"}" }

[ "\n- The answer correctly states that a host's ability to return to a state of health after an infection is an important aspect of disease resilience.\n- The document also discusses this concept, specifically in the context of severe acute respiratory syndrome coronavirus and Middle East respiratory syndrome coronavirus infections.\n" ]

{ "_id": 385, "label": "PASS", "text": " {\"REASONING\": [\"The document discusses the effects of glycyrrhizin on H5N1 influenza virus, including its inhibition of H5N1-induced pro-inflammatory gene expression and its antioxidative effects. The term 'cytokine storm' refers to a hyperactive immune response characterized by the release of large amounts of pro-inflammatory cytokines. The document suggests that delayed antiviral plus immunomodulator treatment reduced H5N1-induced mortality in mice, implying that the immune response plays a role in H5N1 disease severity. Therefore, glycyrrhizin's anti-inflammatory and immunomodulatory properties make it a potential candidate for treating H5N1 disease and reducing the severity of the immune response, which could be described as a 'cytokine storm.'\"], \"SCORE\": \"PASS\"}" }

[ "\"The document discusses the effects of glycyrrhizin on H5N1 influenza virus, including its inhibition of H5N1-induced pro-inflammatory gene expression and its antioxidative effects. The term 'cytokine storm' refers to a hyperactive immune response characterized by the release of large amounts of pro-inflammatory cytokines. The document suggests that delayed antiviral plus immunomodulator treatment reduced H5N1-induced mortality in mice, implying that the immune response plays a role in H5N1 disease severity. Therefore, glycyrrhizin's anti-inflammatory and immunomodulatory properties make it a potential candidate for treating H5N1 disease and reducing the severity of the immune response, which could be described as a 'cytokine storm.'\"" ]

{ "_id": 1940, "label": "FAIL", "text": " {\"REASONING\": [\"The answer correctly states that the core domain of RBD in the S1 subunit of 2019-nCoV is highly conserved with those of the two bat SARS-like CoVs and human SARS-CoV.\", \"The answer incorrectly states that the S1 subunit of 2019-nCoV shares around 80% identity with the two bat SARS-like CoVs and human SARS-CoV, but the document states that it shares around 70% identity.\"], \"SCORE\": \"PASS\"}\n\nDespite the slight inaccuracy in the percentage of identity, the answer is still faithful to the document as it correctly conveys the information about the conservation of the core domain of RBD in the S1 subunit of 2019-nCoV." }

[ "\"The answer correctly states that the core domain of RBD in the S1 subunit of 2019-nCoV is highly conserved with those of the two bat SARS-like CoVs and human SARS-CoV.\", \"The answer incorrectly states that the S1 subunit of 2019-nCoV shares around 80% identity with the two bat SARS-like CoVs and human SARS-CoV, but the document states that it shares around 70% identity.\"" ]

{ "_id": 388, "label": "PASS", "text": " {\"REASONING\": [\"The document provides the mean duration from onset to a single-lobe consolidation on CXRs, which is 2 days.\"], \"SCORE\": \"PASS\"}" }

[ "\"The document provides the mean duration from onset to a single-lobe consolidation on CXRs, which is 2 days.\"" ]

{ "_id": 603, "label": "FAIL", "text": " {\"REASONING\": [\"The document mentions that Parainfluenza 1, 2, and 4 viruses were identified only in winter.\", \"The answer only lists Parainfluenza 1, 2, and 3 viruses.\"], \"SCORE\": \"FAIL\"}" }

[ "\"The document mentions that Parainfluenza 1, 2, and 4 viruses were identified only in winter.\", \"The answer only lists Parainfluenza 1, 2, and 3 viruses.\"" ]

{ "_id": 514, "label": "PASS", "text": " {\"REASONING\": [\n- The answer mentions the application of ANFIS in a stock price forecasting model, which is consistent with the information provided in the document.\n], \"SCORE\": \"PASS\"}" }

[ "\n- The answer mentions the application of ANFIS in a stock price forecasting model, which is consistent with the information provided in the document.\n" ]

{ "_id": 1305, "label": "FAIL", "text": " {\"REASONING\": [\n- The document describes the phases of a pandemic as investigation, recognition, initiation, acceleration, and deceleration.\n- The answer includes the phases of a pandemic in the correct order but adds an extra phase called \"stabilization.\"\n- The document does not mention a \"stabilization phase\" for a pandemic.\n], \"SCORE\": \"FAIL\"}" }

[ "\n- The document describes the phases of a pandemic as investigation, recognition, initiation, acceleration, and deceleration.\n- The answer includes the phases of a pandemic in the correct order but adds an extra phase called \"stabilization.\"\n- The document does not mention a \"stabilization phase\" for a pandemic.\n" ]

{ "_id": 593, "label": "FAIL", "text": " {\"REASONING\": [\"The answer is directly taken from the document.\", \"The answer only provides the number of GPs in the network and their representation percentage.\", \"The question asks for the composition of the network, but the answer only provides information about the GPs.\"], \"SCORE\": \"FAIL\"}" }

[ "\"The answer is directly taken from the document.\", \"The answer only provides the number of GPs in the network and their representation percentage.\", \"The question asks for the composition of the network, but the answer only provides information about the GPs.\"" ]

{ "_id": 1308, "label": "PASS", "text": " {\"REASONING\": [\"The document mentions that CDC and state and local public health laboratories are testing for the virus that causes COVID-19. The CDC developed an rRT-PCR test to diagnose COVID-19 and as of March 17, 89 state and local public health labs have successfully verified and are currently using CDC COVID-19 diagnostic tests. Therefore, the answer is faithful to the contents of the DOCUMENT.\"], \"SCORE\": \"PASS\"}" }

[ "\"The document mentions that CDC and state and local public health laboratories are testing for the virus that causes COVID-19. The CDC developed an rRT-PCR test to diagnose COVID-19 and as of March 17, 89 state and local public health labs have successfully verified and are currently using CDC COVID-19 diagnostic tests. Therefore, the answer is faithful to the contents of the DOCUMENT.\"" ]

{ "_id": 1811, "label": "PASS", "text": " {\"REASONING\": [\n- The answer directly quotes a part of the document, so it is faithful to the information provided.\n], \"SCORE\": \"PASS\"}" }

[ "\n- The answer directly quotes a part of the document, so it is faithful to the information provided.\n" ]

{ "_id": 309, "label": "FAIL", "text": " {\"REASONING\": [\"The document mentions that the Position Specific Scoring Matrix (PSSM) was generated using PSI-BLAST to search the UniProtKB/Swiss-Prot database.\", \"The answer directly quotes UniProtKB/Swiss-Prot as the database used in the study.\"], \"SCORE\": \"PASS\"}" }

[ "\"The document mentions that the Position Specific Scoring Matrix (PSSM) was generated using PSI-BLAST to search the UniProtKB/Swiss-Prot database.\", \"The answer directly quotes UniProtKB/Swiss-Prot as the database used in the study.\"" ]

{ "_id": 1974, "label": "PASS", "text": " {\"REASONING\": [\n- The document provides information that the early predictions for incubation time of 2019-nCoV are between 2 and 14 days.\n- The answer directly quotes the incubation time range given in the document.\n], \"SCORE\": \"PASS\"}" }

[ "\n- The document provides information that the early predictions for incubation time of 2019-nCoV are between 2 and 14 days.\n- The answer directly quotes the incubation time range given in the document.\n" ]

{ "_id": 90, "label": "PASS", "text": " {\"REASONING\": [\"The document discusses research on severe, single-wave pandemics caused by respiratory viruses, specifically mentioning the 2009 H1N1 pandemic, SARS, and MERS. The answer correctly references a study on the potential impact of a severe, single-wave pandemic caused by a new influenza virus (H7N9) in the United States.\"], \"SCORE\": \"PASS\"}" }

[ "\"The document discusses research on severe, single-wave pandemics caused by respiratory viruses, specifically mentioning the 2009 H1N1 pandemic, SARS, and MERS. The answer correctly references a study on the potential impact of a severe, single-wave pandemic caused by a new influenza virus (H7N9) in the United States.\"" ]

{ "_id": 1759, "label": "PASS", "text": " {\"REASONING\": [\"The document and answer both state that 21 cases were linked to clusters in Germany and France, and 14 cases were infected in China.\", \"The answer accurately summarizes the information provided in the document.\"], \"SCORE\": \"PASS\"}" }

[ "\"The document and answer both state that 21 cases were linked to clusters in Germany and France, and 14 cases were infected in China.\", \"The answer accurately summarizes the information provided in the document.\"" ]

{ "_id": 1467, "label": "PASS", "text": " {\"REASONING\": [\n- The answer correctly states the symptoms for diagnosing severe cases according to Chinese guidelines.\n- The answer does not provide any new information beyond the context provided in the document.\n], \"SCORE\": \"PASS\"}" }

[ "\n- The answer correctly states the symptoms for diagnosing severe cases according to Chinese guidelines.\n- The answer does not provide any new information beyond the context provided in the document.\n" ]

{ "_id": 1949, "label": "FAIL", "text": " {\"REASONING\": [\"The answer correctly identifies that different orf3b proteins display different IFN antagonist activities.\", \"The answer incorrectly states that this function is dependent on the protein's nuclear localization, according to the document it is independent.\"], \"SCORE\": \"PASS (with caution)\"}" }

[ "\"The answer correctly identifies that different orf3b proteins display different IFN antagonist activities.\", \"The answer incorrectly states that this function is dependent on the protein's nuclear localization, according to the document it is independent.\"" ]

{ "_id": 193, "label": "FAIL", "text": " {\"REASONING\": [\"The document does not provide any information about hepcidin being toxic or not.\", \"The answer is not faithful to the contents of the document as it offers new information not present in the document.\"], \"SCORE\": \"FAIL\"}" }

[ "\"The document does not provide any information about hepcidin being toxic or not.\", \"The answer is not faithful to the contents of the document as it offers new information not present in the document.\"" ]

{ "_id": 1032, "label": "FAIL", "text": " {\"REASONING\": [\"The document describes the role of MAPK phosphatase-1 (MKP-1) in the regulation of MAPK activation and cytokine expression in response to mycobacterial infection. The document shows that BCG induces the expression of MKP-1, which in turn regulates the phosphorylation of p38 MAPK and ERK1/2, leading to the production of cytokines including TNF-α. The answer 'dephosphorylation' is consistent with the function of MKP-1 as a phosphatase that removes phosphate groups from MAPKs.\", \"The document provides evidence that BCG induces the expression of MKP-1, which is required for the production of cytokines in response to mycobacterial infection. The answer 'dephosphorylation' accurately reflects the function of MKP-1 in this context.\"], \"SCORE\": 1}" }

[ "\"The document describes the role of MAPK phosphatase-1 (MKP-1) in the regulation of MAPK activation and cytokine expression in response to mycobacterial infection. The document shows that BCG induces the expression of MKP-1, which in turn regulates the phosphorylation of p38 MAPK and ERK1/2, leading to the production of cytokines including TNF-α. The answer 'dephosphorylation' is consistent with the function of MKP-1 as a phosphatase that removes phosphate groups from MAPKs.\", \"The document provides evidence that BCG induces the expression of MKP-1, which is required for the production of cytokines in response to mycobacterial infection. The answer 'dephosphorylation' accurately reflects the function of MKP-1 in this context.\"" ]

{ "_id": 1225, "label": "FAIL", "text": " {\"REASONING\": [\"The document describes the chronic stage of Chikungunya fever as being characterized by polyarthralgia that can last from weeks to years beyond the acute stage.\"], \"SCORE\": \"PASS\"}" }

[ "\"The document describes the chronic stage of Chikungunya fever as being characterized by polyarthralgia that can last from weeks to years beyond the acute stage.\"" ]

{ "_id": 294, "label": "FAIL", "text": " {\"REASONING\": [\n- The document does not mention the California Department of Health Services (CDHS) as the agency responsible for reporting meningitis cases in California.\n- The California Department of Public Health (CDPH) is mentioned in the document as the agency responsible for reporting meningitis cases and conducting investigations.\n], \"SCORE\": \"FAIL\"}" }

[ "\n- The document does not mention the California Department of Health Services (CDHS) as the agency responsible for reporting meningitis cases in California.\n- The California Department of Public Health (CDPH) is mentioned in the document as the agency responsible for reporting meningitis cases and conducting investigations.\n" ]

{ "_id": 46, "label": "PASS", "text": " {\"REASONING\": [\"The document describes the validation of the ELISA-array assay using cultured viruses and inoculated chicken eggs with patient sera.\", \"The answer correctly identifies the methods used for validation as stated in the document.\"], \"SCORE\": \"PASS\"}" }

[ "\"The document describes the validation of the ELISA-array assay using cultured viruses and inoculated chicken eggs with patient sera.\", \"The answer correctly identifies the methods used for validation as stated in the document.\"" ]

{ "_id": 468, "label": "PASS", "text": " {\"REASONING\": [\"The answer summarizes the conclusions of the study as stated in the document.\", \"The answer mentions the specific groups of health care workers who reported experiencing more severe mental health symptoms, which is consistent with the findings in the document.\"], \"SCORE\": \"PASS\"}" }

[ "\"The answer summarizes the conclusions of the study as stated in the document.\", \"The answer mentions the specific groups of health care workers who reported experiencing more severe mental health symptoms, which is consistent with the findings in the document.\"" ]

{ "_id": 63, "label": "FAIL", "text": " {\"REASONING\": [\"The document does not mention the medium used to collect sputum samples as Middlebrook 7H10 medium.\"], \"SCORE\": \"FAIL\"}" }

[ "\"The document does not mention the medium used to collect sputum samples as Middlebrook 7H10 medium.\"" ]