PMCID
string | Sentences
string | ner
list |
|---|---|---|
PMC11698348
|
In brief, mouse skin was dissected using Trypsin-EDTA (0.25%) and incubated for 2 hours overnight at 4°C.
|
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PMC8584666
|
Furthermore, the secreted soluble GPI-80 from PC3 cells was co-localized with exosome markers, and soluble GPI-80 was detected in the plasma of high-risk group prostate cancer patients.
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PMC6461034
|
Per sample, a network of inferred kinase–substrate relations annotated with INKA scores is visualized using the R package “network” (Butts, 2008).
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PMC9429973
|
These results supported the FDA approval of asciminib as a new treatment option for pts with CML-CP with T315I (NCCN 2021).
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PMC11252553
|
The background values (non-irradiated and untreated samples) have been subtracted from the data shown in the graph Figures 5-7.
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PMC9429973
|
Median time after first infusion was 4 months and 38% received a second lymphodepletion regimen.
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PMC7081114
|
Microtubules and kinesins play roles in intercellular signal transduction, transport, malignant tumorigenesis, and tumor progression, invasion, and metastasis.
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PMC11640555
|
During GBM progression, uncontrolled proliferation of cells leads to the instability of the tumor microenvironment with tumor cells also invading surrounding tissue up to the BBB, where results of said invasion are characterized by loss of integrity and breakdown of tight junctions of the endothelium, contributing to the extravasation of the tumoral cells expressing cytokines (interferon-γ (IFN-γ), tumor necrosis factor-α (TNF-α), and growth factors .
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PMC9541067
|
j–l The values of the band intensity represent the densitometric estimation of each band normalised by β-actin in (b–f, respectively). (*
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PMC9429973
|
Image: Summary/Conclusion: Among RUX-treated pts, lower RUX doses, comorbidities and no spleen response are significant predictors of hospitalization.
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PMC9429973
|
As a result, patients previously diagnosed as smoldering MM (SMM), were considered to have MM requiring treatment if they had a FLC ratio ≥100.
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PMC11696659
|
A random-effects meta-analysis showed that patients with lung cancer had shorter telomere length than controls, with an odds ratio of 1.13 (95 % CI: 0.82–1.81, p = 0.46) .
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PMC11661040
|
The activation of the wnt/β-catenin signaling pathway contributes to the metastasis of osteosarcoma cells(Wen et al. 2021); however, our study did not demonstrate any impact on the metastatic ability of these cells.
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PMC9352806
|
Lipid droplets (LDs) are cytoplasmic organelles containing mostly TAG, surrounded by a monolayer mainly of PC and PE.
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PMC11088135
|
LncRNA NUTM2A-AS1 was negatively correlated with miR-376a-3p.
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PMC11064533
|
WT without gentamicin stress (median value normalized to 100%), and the four genes are shown with (red bar) and without (blue bar) gentamicin when adhered to 5637 cell line. (
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PMC11087766
|
Then, 200 μL of culture was mixed with 5 mL 0.35% LB top agar ± 0.1% arabinose and poured onto a plate with the appropriate antibiotic.
|
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] |
PMC8992508
|
A sulfonamide group was introduced instead of an amide function to improve aqueous solubility and this modification led to specific P-gp inhibitors.
|
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"O",
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PMC11036064
|
After seeding 5×10 transfected and non-transfected cells into a six‐well plate and incubating for 14 days and treatment, the cells were stained using crystal violet.
|
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PMC11684821
|
CD8 engages a largely invariant site on MHC-I to augment recognition of the peptide MHC by the highly variable αβ T cell receptor (TCR) (2, 3).
|
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PMC11680578
|
Fig. 7Effect of paclitaxel (PTX) and rosiglitazone (RGZ) on the expression of PPAR-γ protein expression in SKOV-3 ovarian cancer cells.
|
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PMC11267830
|
e Moreover, RBM39 knockdown significantly inhibited the proliferation of J. gamma1 and Jurkat cells.
|
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}
] |
PMC11337594
|
This study aimed to elucidate the intrinsic mechanism of this inhibitory effect, which may facilitate the discovery of novel chemotherapeutic agents.
|
[
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"O",
"O",
"O",
"O",
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"O",
"O",
"O",
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PMC11509224
|
The 4,8-dimethyl-5-(1,3,3-trimethylcyclohexyl)-octahydro-1H-2λ-isoquinoline heterocyclic skeleton found in oxeatine, which features a δ-lactam with the nitrogen atom bridging C-6 and C-15 of a rearranged spongian carbon framework, was unknown in nature or from synthesis.
|
[
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] |
PMC10421378
|
Tubes containing 9 mL of solvent (0.9% NaCl) were prepared, and then 1 mL of the sample was added into the first tube so that a dilution of 10 was obtained.
|
[
{
"tags": [
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"O",
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]
}
] |
PMC11377827
|
CA9: control vs. USP43 sgRNA *P = 0.0444, control vs. Set1B sgRNA **P = 0.0056.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
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"P",
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}
] |
PMC11047729
|
Not only that, but also, vitamin D is effective in different types of leukemias, which makes it quite versatile.
|
[
{
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"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
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"O",
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"which",
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"."
]
}
] |
PMC9429973
|
Results: We identified twelve CLL cases with IGLV3-21.
|
[
{
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"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
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"We",
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"twelve",
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"cases",
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"IGLV3",
"-",
"21",
"."
]
}
] |
PMC9429973
|
A similar trend was observed according to karyotype complexity represented by number of aberrations apart from del(5q).
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
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")",
"."
]
}
] |
PMC11545868
|
It also exhibited antitumor effects by inhibiting peptidyl-prolyl isomerase-1 (Pin-1), which is overexpressed in human malignancies .
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
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"tokens": [
"It",
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"exhibited",
"antitumor",
"effects",
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"Pin-1",
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",",
"which",
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"overexpressed",
"in",
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"malignancies",
"."
]
}
] |
PMC9429973
|
This is in line with the general population.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"This",
"is",
"in",
"line",
"with",
"the",
"general",
"population",
"."
]
}
] |
PMC11704834
|
To express exogenous TLE1 in A549 cell line, parental cells were transduced with lentiviral GFP-TLE1 or the empty control GFP construct (Horizon Discovery) (8,9).
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"B-CellLine",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
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"Horizon",
"Discovery",
")",
"(",
"8,9",
")",
"."
]
}
] |
PMC11763111
|
Three or five days later, 2.5 × 10 CAR-T cells and 2.5 × 10 NK cells were injected intravenously at a 1:1 ratio.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
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"tokens": [
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"2.5",
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"intravenously",
"at",
"a",
"1:1",
"ratio",
"."
]
}
] |
PMC9780037
|
The biosensors for quantification of cyt c in the serum demonstrate the versatility of the methodologies available to detect this protein in biological samples.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
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"tokens": [
"The",
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"cyt",
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"the",
"methodologies",
"available",
"to",
"detect",
"this",
"protein",
"in",
"biological",
"samples",
"."
]
}
] |
PMC11397654
|
Notably, the most active pyrrolidine-substituted azacalixarenepyrimidine 72j featured inhibitory properties comparable to those of the benchmark drug doxorubicin while being considerably less toxic for the normal human foetal hepatocyte line L-02.
|
[
{
"tags": [
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"O",
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"O",
"O",
"O",
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"O",
"O",
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"O",
"O",
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"foetal",
"hepatocyte",
"line",
"L-02",
"."
]
}
] |
PMC11746948
|
Furthermore, the GPX4 R152H mutation’s association with SSMD suggests that targeting APT2 to maintain GPX4 palmitoylation may enhance GPX4-R152H activity, proposing APT2 as a viable target for therapeutic intervention.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
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"proposing",
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"as",
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"target",
"for",
"therapeutic",
"intervention",
"."
]
}
] |
PMC11618052
|
Quinazolines' anticancer properties can be traced back to Paganini (vaccine), a naturally occurring quinazoline discovered in 1888.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
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"tokens": [
"Quinazolines",
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"anticancer",
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"a",
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"quinazoline",
"discovered",
"in",
"1888",
"."
]
}
] |
PMC11657695
|
The horizontal line indicates the log2FoldChange.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"The",
"horizontal",
"line",
"indicates",
"the",
"log2FoldChange",
"."
]
}
] |
PMC11310713
|
However, estrogen and progesterone induce the proliferation of hormone receptor-positive breast cancer cells compared to estrogen alone .
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
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"induce",
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"breast",
"cancer",
"cells",
"compared",
"to",
"estrogen",
"alone",
"."
]
}
] |
PMC10669966
|
Therefore, we decided to further investigate its role in LPS.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Therefore",
",",
"we",
"decided",
"to",
"further",
"investigate",
"its",
"role",
"in",
"LPS",
"."
]
}
] |
PMC11738017
|
Anti-BCMA TCE cytotoxicity is dependent on the ratio of T-cell engagement per mBCMA molecules that is factorized by the combinatorial effect of sBCMA, mBCMA, E:T ratio, and TCE dosing.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
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"tokens": [
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"mBCMA",
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"E",
":",
"T",
"ratio",
",",
"and",
"TCE",
"dosing",
"."
]
}
] |
PMC11218145
|
OCR traces of control (black line) and TB-treated Ren cells expressed as picomoles of O2 per minute, under basal conditions and after the injection of oligomycin, FCCP, and Rot/AA.
|
[
{
"tags": [
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"O",
"O",
"O",
"O",
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"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
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"tokens": [
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"black",
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"injection",
"of",
"oligomycin",
",",
"FCCP",
",",
"and",
"Rot/AA",
"."
]
}
] |
PMC11656380
|
All tumor cell lines and primary human peripheral blood mononuclear cells (PBMCs) listed in Table S1 were obtained from commercial sources and used in the study.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
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"tokens": [
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"PBMCs",
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"listed",
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"obtained",
"from",
"commercial",
"sources",
"and",
"used",
"in",
"the",
"study",
"."
]
}
] |
PMC11599565
|
In line with this, both CD24 and EpCAM were not detected in “twin” cells, but were highly expressed in SKOV3 cells (Fig. 6, Panel B).
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
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"O",
"O",
"O",
"O",
"O",
"O",
"O",
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"tokens": [
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"in",
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"cells",
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"Fig.",
"6",
",",
"Panel",
"B",
")",
"."
]
}
] |
PMC8382973
|
Stability of the 2P23 gel in complete growth medium was evaluated in a biological assay as a function of temperature.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Stability",
"of",
"the",
"2P23",
"gel",
"in",
"complete",
"growth",
"medium",
"was",
"evaluated",
"in",
"a",
"biological",
"assay",
"as",
"a",
"function",
"of",
"temperature",
"."
]
}
] |
PMC7039683
|
Zebrafish embryos were maintained at 28.5°C, and staged by hours or days post-fertilization (hpf or dpf).
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Zebrafish",
"embryos",
"were",
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"at",
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"°",
"C",
",",
"and",
"staged",
"by",
"hours",
"or",
"days",
"post-fertilization",
"(",
"hpf",
"or",
"dpf",
")",
"."
]
}
] |
PMC11672881
|
Its downregulation in response to TQ treatment is, therefore, significant, as it may help inhibit tumor progression and improve the therapeutic response .
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Its",
"downregulation",
"in",
"response",
"to",
"TQ",
"treatment",
"is",
",",
"therefore",
",",
"significant",
",",
"as",
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"may",
"help",
"inhibit",
"tumor",
"progression",
"and",
"improve",
"the",
"therapeutic",
"response",
"."
]
}
] |
PMC9960565
|
H-NMR (400 MHz, D2O) [ppm]: δ = 2.65 (Ho, t, 36H), 2.85 (Hc + Hi, t, 19H), 3.20 (Ha + Hg, m, 14H), 3.30 (Hb + Hh + Hn, m, 56H), 3.52 (Hm, t, 18H), and 3.68 (Hf + Hl, m, 23H).
|
[
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"O",
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"O",
"O",
"O",
"O",
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"O",
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"O",
"O",
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"O",
"O",
"O",
"O",
"O",
"O",
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"O",
"O",
"O",
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"O",
"O",
"O",
"O",
"O",
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"O",
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"O",
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",",
"23H",
")",
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]
}
] |
PMC8316344
|
Does the expression level of TRIB2 determine the degree of the sensitivity to the induction of ferroptosis in Bel-7404 and SK-Hep1 cells?
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"B-CellLine",
"O",
"B-CellLine",
"O",
"O"
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"tokens": [
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"level",
"of",
"TRIB2",
"determine",
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"induction",
"of",
"ferroptosis",
"in",
"Bel-7404",
"and",
"SK-Hep1",
"cells",
"?"
]
}
] |
PMC9429973
|
Flow cytometry and western blotting assessed the combinational effect of Calcineurin/NFAT inhibitors and BTZ on MM cells.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
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"of",
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"inhibitors",
"and",
"BTZ",
"on",
"MM",
"cells",
"."
]
}
] |
PMC11695623
|
The possible biological functions and signal pathways of DCUN1D5-related genes were analyzed by bioinformatics.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"The",
"possible",
"biological",
"functions",
"and",
"signal",
"pathways",
"of",
"DCUN1D5-related",
"genes",
"were",
"analyzed",
"by",
"bioinformatics",
"."
]
}
] |
PMC11721587
|
WB analysis of Ulk3 SUMOylation and maturation in NIH3T3 cells expressing the indicated Ulk3 constructs and treated with Shh. (
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"B-CellLine",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"WB",
"analysis",
"of",
"Ulk3",
"SUMOylation",
"and",
"maturation",
"in",
"NIH3T3",
"cells",
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"the",
"indicated",
"Ulk3",
"constructs",
"and",
"treated",
"with",
"Shh",
".",
"("
]
}
] |
PMC9429973
|
Methods: DIRECT enrolled newly diagnosed CP-CML pts.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Methods",
":",
"DIRECT",
"enrolled",
"newly",
"diagnosed",
"CP-CML",
"pts",
"."
]
}
] |
PMC9429973
|
The B-cell maturation antigen (BCMA)-directed CAR T cell therapy idecabtagene vicleucel (ide-cel, bb2121) received regulatory approval in the US for pts with RRMM with ≥4 prior lines of therapy (LOT), including an IMiD agent, PI, and anti-CD38 mAb, and in Europe and Japan for pts with RRMM with ≥3 prior LOTs including an IMiD agent, PI, and anti-CD38 mAb.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
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"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
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"O",
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"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
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"maturation",
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"an",
"IMiD",
"agent",
",",
"PI",
",",
"and",
"anti-CD38",
"mAb",
"."
]
}
] |
PMC9429973
|
Discrepancies were discussed to be included or excluded.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Discrepancies",
"were",
"discussed",
"to",
"be",
"included",
"or",
"excluded",
"."
]
}
] |
PMC11352746
|
This makes these instruments superior for detailed cellular analysis and imaging clarity.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"This",
"makes",
"these",
"instruments",
"superior",
"for",
"detailed",
"cellular",
"analysis",
"and",
"imaging",
"clarity",
"."
]
}
] |
PMC10831439
|
PD-1 expression on CD19-CAR-iNKT cells and untransduced iNKT cells on contact with Raji cells (left, n=3) and representative data for one donor (right).
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"B-CellLine",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"PD-1",
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"cells",
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"and",
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"data",
"for",
"one",
"donor",
"(",
"right",
")",
"."
]
}
] |
PMC11391695
|
Following the removal of cell fragments caused by the scratch, the cells were washed three times with PBS buffer and the cell culture solution was drained off.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
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"tokens": [
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"the",
"removal",
"of",
"cell",
"fragments",
"caused",
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"cells",
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"three",
"times",
"with",
"PBS",
"buffer",
"and",
"the",
"cell",
"culture",
"solution",
"was",
"drained",
"off",
"."
]
}
] |
PMC9429973
|
One patient lost 100% recipient STR profile and become chimera with 43% of the recipient.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
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"One",
"patient",
"lost",
"100",
"%",
"recipient",
"STR",
"profile",
"and",
"become",
"chimera",
"with",
"43",
"%",
"of",
"the",
"recipient",
"."
]
}
] |
PMC7452526
|
Effect of silver nanoparticles in the induction of apoptosis has been studied previously and different mechanisms of the potential cytotoxicity of silver nanoparticles have been investigated such as activation of apoptotic caspases, DNA fragmentation, nuclear fragmentation, ROS generation, leakage of LDH and also altering mitochondrial membrane potential .
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Effect",
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"silver",
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"of",
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"different",
"mechanisms",
"of",
"the",
"potential",
"cytotoxicity",
"of",
"silver",
"nanoparticles",
"have",
"been",
"investigated",
"such",
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"activation",
"of",
"apoptotic",
"caspases",
",",
"DNA",
"fragmentation",
",",
"nuclear",
"fragmentation",
",",
"ROS",
"generation",
",",
"leakage",
"of",
"LDH",
"and",
"also",
"altering",
"mitochondrial",
"membrane",
"potential",
"."
]
}
] |
PMC9096373
|
The paraffin-embedded tissues were fixed in 10% formalin and sliced into 5-µm-thick sections using a microtome (Leica Biosystems, Wetzlar, Germany).
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"The",
"paraffin-embedded",
"tissues",
"were",
"fixed",
"in",
"10",
"%",
"formalin",
"and",
"sliced",
"into",
"5-µm-thick",
"sections",
"using",
"a",
"microtome",
"(",
"Leica",
"Biosystems",
",",
"Wetzlar",
",",
"Germany",
")",
"."
]
}
] |
PMC11655536
|
Moreover, other cell death pathways involving lysosome in addition to apoptosis may also participate in HA-induced cell death in MM cells.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Moreover",
",",
"other",
"cell",
"death",
"pathways",
"involving",
"lysosome",
"in",
"addition",
"to",
"apoptosis",
"may",
"also",
"participate",
"in",
"HA-induced",
"cell",
"death",
"in",
"MM",
"cells",
"."
]
}
] |
PMC10142392
|
The S-PCL-PDMAEMA delivered drugs to the nuclei of U87 cells during a 3-hour incubation, but L-PCL-PDMAEMA accumulated most of them in the cytoplasm.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"B-CellLine",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"The",
"S-PCL-PDMAEMA",
"delivered",
"drugs",
"to",
"the",
"nuclei",
"of",
"U87",
"cells",
"during",
"a",
"3-hour",
"incubation",
",",
"but",
"L-PCL-PDMAEMA",
"accumulated",
"most",
"of",
"them",
"in",
"the",
"cytoplasm",
"."
]
}
] |
PMC7868205
|
Techniques such as energy dispersive X-ray analysis and inductively coupled plasma-optical emission spectrometry (ICP-OES) were used for establishing the elemental composition.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Techniques",
"such",
"as",
"energy",
"dispersive",
"X-ray",
"analysis",
"and",
"inductively",
"coupled",
"plasma-optical",
"emission",
"spectrometry",
"(",
"ICP-OES",
")",
"were",
"used",
"for",
"establishing",
"the",
"elemental",
"composition",
"."
]
}
] |
PMC9429973
|
Overall (OS) and progression free survival (PFS) were calculated by Kaplan-Meier method and comparisons done by the log rank test.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Overall",
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"OS",
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"and",
"progression",
"free",
"survival",
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"PFS",
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"were",
"calculated",
"by",
"Kaplan-Meier",
"method",
"and",
"comparisons",
"done",
"by",
"the",
"log",
"rank",
"test",
"."
]
}
] |
PMC10165258
|
Effect of individual drugs on EwS spheroids (A) Timeline of the assay.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Effect",
"of",
"individual",
"drugs",
"on",
"EwS",
"spheroids",
"(",
"A",
")",
"Timeline",
"of",
"the",
"assay",
"."
]
}
] |
PMC11696659
|
This model demonstrated a positive predictive value (PPV) of 0.79 (95 % CI, 0.65–0.88) and a negative predictive value (NPV) of 0.83 (95 % CI, 0.63–0.94) for prediction of lung cancer (Table 2).
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
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"model",
"demonstrated",
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"positive",
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"value",
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"95",
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"0.65–0.88",
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"negative",
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"value",
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"NPV",
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"of",
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"95",
"%",
"CI",
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"0.63–0.94",
")",
"for",
"prediction",
"of",
"lung",
"cancer",
"(",
"Table",
"2",
")",
"."
]
}
] |
PMC9429973
|
In univariable analysis, paranasal cavity lesion was a high-risk factor for sCNSi (subdistribution hazard ratio, 4.34 [95% confidence interval, 1.28–14.73], p = 0.018).
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
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"interval",
",",
"1.28–14.73",
"]",
",",
"p",
"=",
"0.018",
")",
"."
]
}
] |
PMC11269792
|
The bioinformatics website starbase predicted the existence of potential binding sites for miR-6838-5p and CDV3 (Fig. 5A).
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
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"miR-6838",
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"Fig.",
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}
] |
PMC9429973
|
S. Arza Apalategi, B. Heuts, S. Bergevoet, S. van Heeringen, J. Jansen, J. Martens, B. van der Reijden Laboratory Medicine, Laboratory of hematology, Radboudumc; Molecular Biology; Molecular Developmental Biology, Radboud Institute for Molecular Life Sciences, Nijmegen, Netherlands Background: The MLL-AF9 protein contributes to acute myeloid leukemia (AML) development through transcriptional activation of oncogenic gene programs.
|
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PMC11733919
|
Similarly, the use of nanocarriers functionalized with specific moieties to selectively recognize senescent cells can also be considered as a promising strategy.
|
[
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"O",
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"O",
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}
] |
PMC11681005
|
Notably, as 5637 cells expressed high levels of KRT6A/B, we considered them basal‐like cell lines that mimic TPCS.
|
[
{
"tags": [
"O",
"O",
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] |
PMC5925824
|
Data are representative of multiple experiments and donor T cells/DC pairs.
|
[
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"O",
"O",
"O",
"O",
"O",
"O",
"O",
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}
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PMC11585587
|
Treated with RA, the Western blot analysis showed that the expression levels of Bim, Cleaved Caspase 3/9, and Cleaved PARP were increased, and the expression level of Mcl-1 was decreased in MM cells.
|
[
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]
}
] |
PMC9429973
|
The respective advantages of alternative donor such as UD or HaploD are yet to be precisely assessed notably in older population including the search and identification process.
|
[
{
"tags": [
"O",
"O",
"O",
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"O",
"O",
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}
] |
PMC2193049
|
Finally, a sequence encoding a peptide tag derived from the influenza ha was inserted between the GFP and Ub moieties to permit the detection and quantitation of GFPha–Ub fusion.
|
[
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"tags": [
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}
] |
PMC11092382
|
Jin’s group demonstrated that sophocarpine effectively inhibited the attachment and penetration of EV71, therefore preventing the entry of the virus into the cells.
|
[
{
"tags": [
"O",
"O",
"O",
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"O",
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"the",
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}
] |
PMC9684669
|
Moreover, a synergistic effect of terfenadine and anticancer drugs has been demonstrated in the treatment of breast cancer and lung cancer (20, 21).
|
[
{
"tags": [
"O",
"O",
"O",
"O",
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"O",
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"O",
"O",
"O",
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}
] |
PMC11657744
|
AurA expression is regulated at both transcriptional and post-transcriptional levels, with ubiquitin-proteasome-dependent degradation mediated by anaphase-promoting complex during mitosis, typically reaching its lowest level at the G1 phase .
|
[
{
"tags": [
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"O",
"O",
"O",
"O",
"O",
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"O",
"O",
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"O",
"O",
"O",
"O",
"O",
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"O",
"O",
"O",
"O",
"O",
"O",
"O",
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"level",
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"the",
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"phase",
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]
}
] |
PMC10745221
|
A methionine-restricted diet in a mouse model of colorectal carcinoma was shown to decrease m6a mRNA methylation in cancer cells .
|
[
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"tags": [
"O",
"O",
"O",
"O",
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"O",
"O",
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"decrease",
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"mRNA",
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"in",
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"cells",
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]
}
] |
PMC9429973
|
Durable responses with axi-cel were greatest in tumors with prominent B-cell features, but were superior to SOC regardless of these features.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
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"O",
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"tokens": [
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"to",
"SOC",
"regardless",
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"features",
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}
] |
PMC8143558
|
Solanum macrocarpon L. and Balanites aegyptica L. Delile have been reported to exhibit high hemolytic activity.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
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"O",
"O",
"O",
"O"
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"tokens": [
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"L.",
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"L.",
"Delile",
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"reported",
"to",
"exhibit",
"high",
"hemolytic",
"activity",
"."
]
}
] |
PMC10759659
|
P < 0.05, ** P < 0.01, *** P < 0.001) To verify the accuracy of the methods, we first analysed the mRNA and protein levels of ARID1A in the CHCC-HBV cohort between the deficient and normal functioning groups.
|
[
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"O",
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"O",
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"groups",
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}
] |
PMC10940855
|
J, Multiple myeloma cells transduced with gRNA-EFNB2 or gRNA-control were cultured with increasing concentrations of the STAT5 inhibitor 2-[(4-oxo-4H-1-benzopyran-3-yl)methylene]hydrazide 3-pyridinecarboxylic acid (STAT5i) for 24 hours, then BrdU incorporation analysis was performed.
|
[
{
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"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
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"O",
"O",
"O",
"O",
"O",
"O",
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"O",
"O",
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"24",
"hours",
",",
"then",
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"incorporation",
"analysis",
"was",
"performed",
"."
]
}
] |
PMC9429973
|
No clear link of platelet desialylation with multi-refractory ITP, the bleeding phenotype or thrombosis history was found.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
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"tokens": [
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"link",
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"history",
"was",
"found",
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]
}
] |
PMC5839394
|
The polysaccharide fraction was washed twice with milliQ water and the polysaccharide was precipitated with 70% ethanol solution overnight at 4°C.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
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"70",
"%",
"ethanol",
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"overnight",
"at",
"4",
"°",
"C",
"."
]
}
] |
PMC11240448
|
The first step in the cSTAR pipeline is to distinguish different cell states employing ML-based classifiers.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
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"tokens": [
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"step",
"in",
"the",
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"is",
"to",
"distinguish",
"different",
"cell",
"states",
"employing",
"ML-based",
"classifiers",
"."
]
}
] |
PMC10840195
|
Twist not only affects both the Wnt/β-catenin and EMT signalling pathways but also has highly consistent predicted interacting proteins with EMT and Wnt signalling pathway interacting proteins (Fig. 3A, B).
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
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"tokens": [
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"signalling",
"pathway",
"interacting",
"proteins",
"(",
"Fig.",
"3A",
",",
"B",
")",
"."
]
}
] |
PMC11666785
|
Recently developed MINFLUX and MINSTED techniques which is a combination of SMLM and STED has demonstrated imaging of nuclear-pore complex with high spatio-temporal resolution.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
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"tokens": [
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"of",
"nuclear-pore",
"complex",
"with",
"high",
"spatio-temporal",
"resolution",
"."
]
}
] |
PMC11653552
|
The Hippo signaling pathway is a particularly exciting area of research in both solid and hematologic tumors .
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
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"area",
"of",
"research",
"in",
"both",
"solid",
"and",
"hematologic",
"tumors",
"."
]
}
] |
PMC11209164
|
Here, we observed that both TPF and DMF significantly increased Ad5-GFP transduction in several cell lines 70 h post transduction.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Here",
",",
"we",
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"TPF",
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"in",
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"cell",
"lines",
"70",
"h",
"post",
"transduction",
"."
]
}
] |
PMC11787355
|
Previously, we have isolated and validated vaccine-induced glioma-reactive TCRs targeting the tumor-associated antigen, NLGN4X, and neoantigens, IDH1R132H, H3K27M, and CICR215W/Q. In a multinational European glioblastoma immunotherapy clinical trial, Glioma Actively Personalized Vaccine Consortium 101 (GAPVAC-101), newly diagnosed glioblastoma patients were immunized with a warehouse of unmutated glioblastoma-associated peptides (APVAC1), and a warehouse of individual-specific mutated peptides (APVAC2).
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
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"tokens": [
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"glioma-reactive",
"TCRs",
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"the",
"tumor-associated",
"antigen",
",",
"NLGN4X",
",",
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"IDH1R132H",
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"H3K27",
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"a",
"multinational",
"European",
"glioblastoma",
"immunotherapy",
"clinical",
"trial",
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"Glioma",
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"APVAC1",
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",",
"and",
"a",
"warehouse",
"of",
"individual-specific",
"mutated",
"peptides",
"(",
"APVAC2",
")",
"."
]
}
] |
PMC11180402
|
These results demonstrate that miR-129 induction by ISO is responsible for the inhibition of SNHG1, SOX2, MMP-2, and MMP-9 expression and the induction of PTEN expression in 5637 cells, further mediating the inhibition of BMIBC invasion and anchorage-independent growth in 5637 cells.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"B-CellLine",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"B-CellLine",
"O",
"O"
],
"tokens": [
"These",
"results",
"demonstrate",
"that",
"miR-129",
"induction",
"by",
"ISO",
"is",
"responsible",
"for",
"the",
"inhibition",
"of",
"SNHG1",
",",
"SOX2",
",",
"MMP-2",
",",
"and",
"MMP-9",
"expression",
"and",
"the",
"induction",
"of",
"PTEN",
"expression",
"in",
"5637",
"cells",
",",
"further",
"mediating",
"the",
"inhibition",
"of",
"BMIBC",
"invasion",
"and",
"anchorage-independent",
"growth",
"in",
"5637",
"cells",
"."
]
}
] |
PMC11473750
|
Copy number (relative ploidy), and gene dependency (CERES) data for RNF121 were first obtained from DepMap and then filtered using R/R Studio (v1.1.456) for disease types/cell lines common to all data sources as well as those disease types that had >1 cell line present.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
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"number",
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"relative",
"ploidy",
")",
",",
"and",
"gene",
"dependency",
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"CERES",
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"data",
"for",
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"were",
"first",
"obtained",
"from",
"DepMap",
"and",
"then",
"filtered",
"using",
"R/R",
"Studio",
"(",
"v1.1.456",
")",
"for",
"disease",
"types/cell",
"lines",
"common",
"to",
"all",
"data",
"sources",
"as",
"well",
"as",
"those",
"disease",
"types",
"that",
"had",
">",
"1",
"cell",
"line",
"present",
"."
]
}
] |
PMC11634794
|
This indicates that LAMP1 may serve as a predictive marker for EGF-induced cell overproliferation (17).
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"This",
"indicates",
"that",
"LAMP1",
"may",
"serve",
"as",
"a",
"predictive",
"marker",
"for",
"EGF-induced",
"cell",
"overproliferation",
"(",
"17",
")",
"."
]
}
] |
PMC10523483
|
Future investigations on how H1.2 interacts with NRF2 to fine-tune nuclear NRF2-mediated transcription process are desired.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Future",
"investigations",
"on",
"how",
"H1.2",
"interacts",
"with",
"NRF2",
"to",
"fine-tune",
"nuclear",
"NRF2-mediated",
"transcription",
"process",
"are",
"desired",
"."
]
}
] |
PMC9878562
|
DOHH2 cells migrated more efficiently than VAL-wt, but also displayed enhanced chemokinesis.
|
[
{
"tags": [
"B-CellLine",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"DOHH2",
"cells",
"migrated",
"more",
"efficiently",
"than",
"VAL-wt",
",",
"but",
"also",
"displayed",
"enhanced",
"chemokinesis",
"."
]
}
] |
PMC11758416
|
Note: Other cell dyes including CellTrace Violet (Thermo Fisher Scientific, cat: C34557) or CellTrace FarRed (Thermo Fisher Scientific, cat: C34564) can be used to identify the L cells if CFSE is not a good option.a.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Note",
":",
"Other",
"cell",
"dyes",
"including",
"CellTrace",
"Violet",
"(",
"Thermo",
"Fisher",
"Scientific",
",",
"cat",
":",
"C34557",
")",
"or",
"CellTrace",
"FarRed",
"(",
"Thermo",
"Fisher",
"Scientific",
",",
"cat",
":",
"C34564",
")",
"can",
"be",
"used",
"to",
"identify",
"the",
"L",
"cells",
"if",
"CFSE",
"is",
"not",
"a",
"good",
"option.a",
"."
]
}
] |
PMC11321678
|
If cell debris and large clumps were observed, pass through a 40 µm cell strainer again.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"If",
"cell",
"debris",
"and",
"large",
"clumps",
"were",
"observed",
",",
"pass",
"through",
"a",
"40",
"µm",
"cell",
"strainer",
"again",
"."
]
}
] |
PMC11347429
|
Analysis of differentially expressed genes (DEGs) showed 701 upregulated and 367 downregulated genes when contrasting all infected patients versus healthy controls ( Figure 2A ; complete list of DEGs in Data file 6 ).
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Analysis",
"of",
"differentially",
"expressed",
"genes",
"(",
"DEGs",
")",
"showed",
"701",
"upregulated",
"and",
"367",
"downregulated",
"genes",
"when",
"contrasting",
"all",
"infected",
"patients",
"versus",
"healthy",
"controls",
"(",
"Figure",
"2A",
";",
"complete",
"list",
"of",
"DEGs",
"in",
"Data",
"file",
"6",
")",
"."
]
}
] |
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