Abstract:
A mutant strain of  Francisella tularensis  has attenuated virulence and has a mutation in the gene coding for a putative peroxynitrite resistance protein A (prpA) which prevents normal function of the protein. The mutant is useful as a vaccine against type A and B virulent strains of  F. tularensis , and is produced by obtaining a virulent  F. tularensis  strain and mutating the gene, FTT0918, that codes for prpA.

Description:
FIELD OF THE INVENTION 
       [0001]    The invention relates to attenuated  F. tularensis  useful as live vaccines against tularemia in humans and other mammals. 
       BACKGROUND OF THE INVENTION 
       [0002]      Francisella tularensis  is a pathogenic intracellular bacterium capable of causing infectious disease in more than 150 mammalian species. Arthropod vectors, such as ticks, flies and mosquitoes, are frequently involved in the transmission of the pathogen to mammals but it can be transmitted also via contaminated food and water, and aerosols. There are four subspecies of  F. tularensis , but only two, subspecies  tularensis  (type A), and subspecies  holarctica  (type B), are commonly infectious for humans. Only type A strains of  F. tularensis  may cause lethal infection in humans, in particular untreated respiratory tularemia has a high mortality rate if left untreated. 
         [0003]    Because of its high infectivity, ease of dissemination by aerosol, and capacity to cause severe morbidity and mortality, type A  F. tularensis  has long been considered a potential biological warfare agent. However, to date no specific virulence factors that explain the high virulence of type A strains have been identified. A comparative genomic analysis showed that the proportion of genes conserved among the four subspecies of  F. tularensis  is high, &gt;97%, and that less than 30 of a total of 1,800 genes are unique to type A versus type B  F. tularensis.    
         [0004]    Live attenuated  F. tularensis  vaccines were developed in Russia in the 1950&#39;s from a type B strain. One of these strains, designated as the live vaccine strain, LVS, was transferred to the US. Vaccine studies conducted on volunteers in the 1960&#39;s demonstrated that it protected humans against systemic inoculation or inhalation of a type A strain of the pathogen. Epidemiological studies of tularemia cases among  Francisella  researchers before and after the introduction of LVS vaccination confirmed its utility. However, despite having been developed almost 50 years ago, the nature of the genetic lesion responsible for its attenuation, the protective antigens, and the immunological basis for its efficacy remain unknown. 
         [0005]    Moreover, in both human and animal studies, systemic vaccination with LVS provided sub-optimal protection against aerosol challenge with type A  F. tularensis . For these reasons, LVS has never been licensed as a vaccine. In the past, it was granted investigational new drug (IND) status, but this was revoked by the FDA several years ago. These problems with LVS have motivated a search for better-defined vaccines of equal or greater efficacy. 
         [0006]    Because the protective protein antigens of  F. tularensis  are completely unknown, a sub-unit vaccine is currently inconceivable, especially as it would need to be formulated with an adjuvant system able to elicit robust CD4 +  and CD8 +  T cell responses, both of which are known to be required to control tularemia. Although experimental adjuvants with these properties exist, none have yet been approved for clinical use. 
         [0007]    The identities and characteristics of the virulence factors and protective antigens of the subspecies of  Francisella  are essentially unknown. Although recent comparative genomics analyses have begun to demonstrate genetic differences among the subspecies, these alone have been insufficient to explain their relative virulence. Moreover, it is known that sublethal infection of mice with subspecies  novicida  fails to confer protection against subsequent challenge with subspecies  holarctica  or  tularensis  suggesting that the protective antigens are highly restricted. It has also been observed that only certain mouse strains can be protected by LVS. On this basis, it seems unlikely that defined mutants of the  holarctica  subspecies would be more effective vaccines than LVS. 
         [0008]    Thus, it would be desirable to generate a defined type A strain mutant lacking the minimum number of genes required to render it a safe and effective live vaccine. However, no successful strategy has been disclosed in the prior art. 
       SUMMARY OF THE INVENTION 
       [0009]    A first object of the present invention is to provide mutant  Francisella tularensis  cells that have attenuated virulence and a mutated FTT0918 gene encoding for a putative peoroxynitirite resistance protein (prpA) such that the cells are substantially lacking functional prpA. These cells are useful as vaccines in that they provide protection in immunized humans and other mammals against virulent type A and B strains of  F. tularensis.    
         [0010]    A further object of the invention is to provide for a method of obtaining mutant  F. tularensis  cells for use as a vaccine. Virulent  F. tularensis  cells are treated to delete or mutate the FTT0918 gene, then viable mutant cells substantially lacking in functional prpA are selected and isolated. 
         [0011]    A further object of the invention is to provide for a method for immunizing humans or other mammals against virulent type A and B strains of  F. tularensis . The subject human or mammal is inoculated with the mutant  F. tularensis  lacking prpA function, resulting in a reduced susceptibility to virulent  F. tularensis.    
         [0012]    A first aspect of the invention provides for a mutant of  Francisella tularensis  that has attenuated virulence and that has a mutation in the nucleotide sequence that encodes FTT0918. 
         [0013]    A further aspect of the invention provides for a mutant of  Francisella tularensis  wherein the nucleotide sequence that encodes the putative peroxynitrite resistance protein A (prpA) in wild-type  Francisella tularensis  is mutated, resulting in attenuated virulence. 
         [0014]    A further aspect of the invention provides for an immunogenic composition or vaccine comprising a mutant of  Francisella tularensis  that has attenuated virulence and that has a mutation in the nucleotide sequence FTT0918, and a pharmaceutically acceptable diluent, carrier, vehicle or excipient. 
         [0015]    A further aspect of the invention provides for a method of producing a mutant of  Francisella tularensis  that has attenuated virulence and that has a mutation in the nucleotide sequence FTT0918, comprising the steps of obtaining cells of a virulent  F. tularensis  strain; mutating the nucleotide sequence FTT0918; selecting for viable cells with attenuated virulence and FTT0918 mutations; and isolating said cells with attenuated virulence and FTT0918 mutations. 
         [0016]    A further aspect of the invention provides for a method of producing a mutant of  Francisella tularensis  that has a mutation in the nucleotide sequence that encodes the putative peroxynitrite resistance protein A (prpA) in wild-type  Francisella tularensis , resulting in attenuated virulence, comprising the steps of obtaining cells of a virulent  F. tularensis  strain; mutating the nucleotide sequence that encodes prpA, selecting for viable cells with attenuated virulence and mutations in the nucleotide sequence that encodes prpA; and isolating said cells with attenuated virulence and mutations in the nucleotide sequence that encodes prpA. 
     
    
     
       BRIEF DESCRIPTION OF THE DRAWINGS 
         [0017]    Table 1 illustrates the number of bacteria in PEC cells infected with various strains of  F. tularensis.    
           [0018]    Table 2 illustrates the number of bacteria in mouse tissues infected through intradermal inoculation with various strains of  F. tularensis.    
           [0019]    Table 3 illustrates the number of bacteria in mouse tissues infected through intravenous inoculation with various strains of  F. tularensis.    
           [0020]    Table 4 illustrates the degree of protective immunity against FSC033  F. tularensis  elicited by intradermal immunization with LVS and FSC043/SCHU AV strains of  F. tularensis.    
           [0021]    Table 5 illustrates the growth of virulent  F. tularensis  in mice vaccinated with LVS and FSC043/SCHU AV strains of  F. tularensis.    
           [0022]    Table 6 illustrates differentially expressed proteins in FSC043/SCHU AV strain of  F. tularensis  as compared to FSC033 strain. 
           [0023]    Table 7 illustrates the degree of protective immunity against FSC033  F. tularensis  elicited by intradermal immunization with LVS and defined FSC043/SCHU S4 mutant strains of  F. tularensis.    
           [0024]    Table 8 illustrates the number of bacteria surviving in PBS cells after exposure to SIN-1 for various strains of  F. tularensis.    
           [0025]    Table 9 illustrates the nucleotide sequence of gene FTT0918 and putative amino acid sequence of the protein, prpA, it encodes. 
           [0026]      FIG. 1  illustrates skin lesion development at sites of intradermal inoculation of  F. tularensis  strains. Representative skin reaction observed in mice inoculated with A, 10 2  CFU of SCHU S4 or 10 6  CFU LVS; B, 10 2  CFU 12A or 10 6  SCHU AV; C, nothing or 10 2  CFU LVS or 10 6  CFU mutant ΔigIC. 
           [0027]      FIG. 2  illustrates proteomic comparisons of  F. tularensis  strains. X 2D-PAGE of  Francisella tularensis  strains (a) SCHU S4, (b) SCHU AV and (c) mutant ΔprpA visualized by staining with sypro ruby. Replicate gels within experimental groups were compared. Boxed regions in large gels correspond to enlarged areas below. Protein sequences for FTT0918 (spot 30) and FTT0919 (spot 35) are shown on the bottom right. Amino acid sequences underlined correspond to those peptides detected by LC-MSMS of a tryptic digest of spot 35 from SCHU AV, whilst those in bold are those detected from a tryptic digest of spot 30. 
       
    
    
     DETAILED DESCRIPTION OF THE INVENTION 
       [0028]    While possible  F. tularensis  vaccines have been explored in the prior art, the genetic mutations responsible for attenuation have not been identified. Further, vaccines such as LVS (live vaccine strain) have not proven to be efficacious under all circumstances, such as aerosol challenge by type A  F. tularensis . In addition, LVS causes an obvious skin reaction at the site of inoculation in the skin ( FIG. 1 ), which is undesirable. Others have examined spontaneously mutated type A strains as live vaccines in the past, but concluded they were more virulent than LVS, and not therefore suitable for this purpose. Accordingly, a better understanding of the genetic mutations causing  F. tularensis  attenuation is needed. In addition, an efficacious and safe  F. tularensis  vaccine is required. 
         [0029]    In order to explore the genetic mutations responsible for attenuated virulence, two mutant strains of  F. tularensis , FSC043/SCHU AV and LVS, were analysed. One such mutation was found to be in the gene FTT0918 which encodes a putative peroxynitrite resistance protein A (prpA). The identification of this gene is a significant step towards developing a safe and efficacious vaccine for  F. tularensis , as it is now possible to create mutants in which the gene is intentionally mutated. 
         [0030]    A  F. tularensis  strain mutant ΔFTT0918 is the foundation strain for a new defined live vaccine against tularemia. It will be understood that one or a few additional genes may also be deleted or mutated. Although spontaneous mutants of  F. tularensis , most notably LVS, have been used as live vaccines already, it is not obvious that the absence of gene FTT0918 was responsible for the attenuation of this strain since it lacks several additional genes present in clinical type B strains. Further, it is shown that the mutant strain is effective as a vaccine, in that mice inoculated with the mutant survived both intradermal and aerosol challenges with virulent type A  F. tularensis.    
       Identification of Genetic Mutations Responsible for Attenuation 
       [0031]    A spontaneous mutant with attenuated virulence, designated FSC043 or SCHU AV (hereinafter referred to as SCHU AV), of  Francisella tularensis  subsp.  tularensis  is known. The virulence of the mutant is severely attenuated; its intradermal LD 50  in mice was &gt;10 8  CFU compared to &lt;10 CFU for SCHU S4. SCHU AV proteins were compared with those of the wild-type strain, SCHU S4, a prototypic strain known to be highly virulent for humans and multiple species of experimentally infected mammals including mice. It was demonstrated by proteomic analysis that SCHU AV expressed several proteins at significantly different levels than the wild-type strain, SCHU S4. 
         [0032]    A proteomic comparison of SCHU AV and the wild type virulent parental strain, SCHU S4, revealed the absence or lower expression of 9 proteins from the former versus latter (Table 6). Intriguingly, SCHU AV and LVS expressed a specific protein (spot 35 in  FIG. 2  panel b) not expressed by the parental strain. Proteomic analysis of this protein revealed it to be a hybrid protein consisting of the N-terminal domain of one wild-type protein encoded by gene FTT0918 and the C-terminal domain of another encoded by gene FTT0919. A genomic analysis confirmed the presence of the hybrid gene responsible for this fusion protein in both spontaneous mutants LVS and SCHU AV. 
       Analysis of Role of FTT0918 and FTT0919 Genes 
       [0033]    To better assess the potential role of the two wild-type genes (designated as FTT0918 and FTT0919) in virulence, they were individually targeted for deletion from SCHU S4 using an allelic replacement method previously used to generate defined mutations in LVS. The method incorporated a counter-selection step to ensure that the antibiotic resistance genes as well as all other DNA present in the plasmid used to generate the crossover mutations were absent from the ensuing mutant strain. Deletion of one of the targeted genes, FTT0919, had no obvious effect on virulence. (However, because mice are highly sensitive to infection by  F. tularensis , any subtle decrease in virulence caused by this mutation could be overlooked by this screening procedure. For instance, decreasing the virulence of SCHU S4 to that of a type B strain would not be detected in the murine model, since mice are highly susceptible to both subspecies whereas higher mammals such as rabbits, monkeys, and humans would be far less susceptible to the latter than the former.) Regardless, the ΔFTT0919 strain is clearly far more virulent than LVS or SCHU AV, and unlikely, therefore, to be acceptable as a vaccine candidate. 
         [0034]    In contrast to the ΔFTT0919 strain, the ΔFTT0918 mutant showed significantly reduced virulence for mice. Moreover, mice that recovered from infection with this mutant were protected from subsequent challenge with a highly virulent type A strain. Despite its attenuation, ΔFTT0918 retained a greater residual virulence for mice than either LVS or SCHU AV. This is unsurprising since the latter two spontaneous mutants are missing additional genes some of which must encode additional virulence factors. By selectively deleting some of the latter genes from mutant ΔFTT0918 it should be possible to attenuate it to the same degree as SCHU AV to thereby produce a rationally attenuated strain with superior vaccine properties (safer and more effective) compared to LVS. Of course, the same technique used to generate mutant ΔFTT0918 can be used to delete additional genes from it. 
         [0035]    ΔFTT0918 encodes for a 58-kDa protein with no close homology to any other known proteins. In its absence, strain ΔFTT0918 and LVS are rendered highly susceptible to in vitro killing by peroxynitrite. In an earlier examination of the host killing mechanisms of the LVS strain, it was observed that iNOS and to a minor degree phox, contributed to the bactericidal activity in vitro. However, on a molar basis, peroxynitrite was identified as a much more bactericidal molecule than nitric oxide or hydrogen peroxide. Thus, resistance to peroxynitrite may be an important factor for the virulence of wild-type  F. tularensis  strains. The fact that SCHU AV, which like LVS contains a defective FTT0918 gene, appears to be more resistant to this type of killing than ΔFTT0918 indicates that the mechanisms affecting the resistance are quite complicated. A simple explanation is that the hybrid gene product of the chimeric FTT0918 and FTT0919 gene that is expressed in SCHU AV has a residual function and explains the difference. However, since LVS also produces a similar hybrid protein but is susceptible to peroxynitrite-mediated killing it must be presumed that other strain-specific factors must also contribute to this phenomenon. 
       Effectiveness of ΔFTT0918 Mutant as Vaccine 
       [0036]    Mice inoculated with the ΔFTT0918 mutant survived longer than those that were not inoculated, or those that were inoculated with the LVS mutant or a ΔigIC attenuated mutant, indicating that the ΔFTT0918 mutant has utility as a vaccine (Table 7). Further, the ΔFTT0918 mutant was disseminated to liver and spleen tissues more efficiently than the ΔigIC mutant (Table 2). 
         [0037]    These results suggest that the ability to disseminate from sites of entry into the body to lymphoid tissues and to multiply intracellularly may be critical for priming of an effective, long-lasting protection, as evidenced by the marginal protection afforded by strain ΔigIC versus the other mutant strains of SCHU S4 examined herein. 
       EXAMPLES 
       [0038]    Bacteria.  F. tularensis  LVS was originally obtained from the American Type Culture Collection. (ATCC 29684). The  F. tularensis  strain FSC033/snMF (subspecies  tularensis ) was originally isolated from a squirrel in Georgia USA, the strains SCHU S4 (subspecies  tularensis ), FSC237, and a spontaneous mutant of the SCHU S4 strain, SCHU AV (abbreviation for AVirulent) (also designated as FSC 043), were all obtained from the  Francisella  Strain Collection (FSC) of the Swedish Defence Research Agency, Umeå. The mutant strains ΔFTT0918, ΔFTT0919, and ΔigIC were all derived from the SCHU S4 strain as detailed below. For the present study, stock cultures of all strains were prepared by growing them as confluent lawns on cysteine heart agar supplemented with 1% (w/v) hemoglobin (CHAH). Bacteria were harvested after 48-72 h incubation at 37° C. in an atmosphere of 5% CO 2  into freezing medium consisting of modified Mueller Hinton broth containing 10% w/v sucrose. Stocks were aliquoted in a volume of 1 ml and stored at −80° C. 
         [0039]    Construction of mutagenesis plasmids. Regions approximately 1,500-base pairs upstream and downstream of each targeted gene were amplified by PCR. The 5′-primers contained SalI restriction sites and the 3′-primers a BamHI site or a PstI site. 
         [0040]    Each upstream fragment included the first 80 nucleotides and the downstream fragments the last 15 nucleotides of the respective gene. They were ligated to SalI/BamHI or SalI/PstI-digested plasmid pBlue-ScriptKS+ (Stratagene, La Jolla, Calif.). From the recombinant plasmids, the cloned DNA fragments were excised with SalI and BamHI and both fragments ligated simultaneously to SalI-digested pPV. 
         [0041]    Conjugal transfer of plasmids. Early log cultures of 10 7  CFU/ml of  E. coli  S17-1 carrying pPV-ΔFTT0918 or pPV-ΔFTT0919 or pPV-ΔigIC and 10 9  CFU/ml of  F. tularensis  LVS were concentrated by centrifugation and resuspended in 50 μl of culture medium, mixed, and plated on either Luria agar (LA) or modified Gc-agar base plates. After incubation, cells were resuspended in PBS and plated on modified GC agar base plates containing 100 μg/ml of polymyxin B for counterselection of the donor  E. coli  strain (Golovliov, 2003) and 2.5 μg/ml of chloramphenicol. To select for a second recombination event, recombinant bacteria were plated on medium containing 5% sucrose. All sucrose-resistant colonies that were sensitive to chloramphenicol were selected for further analysis. 
         [0042]    Exposure of  F. tularensis  to reactive molecular species in a cell-free system. Peroxynitrite (ONOO—) is generated from 3-morpholinosydnonimine hydrochloride (SIN-1) (Molecular Probes, Oregon, USA). Under physiological conditions, 1 mM SIN-1 generates 10 mM of ONOO—/min.  F. tularensis  bacteria were cultivated overnight and diluted to a density of approximately 2×10 6  bacteria/ml in PBS and to some tubes SIN-1 was added to a final concentration of 0.8 mM. The tubes were incubated at 37° C. and viable counts performed at 4 h. 
       Infection of Macrophages. 
       [0043]    Peritoneal exudate cells (PEC) were obtained from mice three days after intraperitoneal injection of 2 ml of 10% proteose peptone. PEC were washed with DMEM (GIBCO BRL, Grand Islands, N.Y.) and resuspended at a density of 3×10 6  cells/ml in culture medium consisting of DMEM with 10% heat-inactivated fetal calf serum. The suspension was aliquotted in 100-μl volumes in 96-well tissue culture plates. After incubation for 2 h at 37° C., non-adherent cells were removed by washing and after an additional 24 h,  F. tularensis  bacteria were added to give a multiplicity of infection of 50 bacteria/PEC. The actual MOI was determined by retrospective plating, thus there were slight variations between experiments. After allowing uptake of bacteria to occur for 1.5 h, the macrophages were washed to remove extracellular bacteria. Macrophages were reconstituted in culture medium supplemented with 2 μg/ml of gentamicin to kill any remaining extracellular bacteria and incubated for indicated periods of time. Then, PEC were lysed with 0.1% dodeoxycholate and the number of intracellular bacteria determined by plating 10-fold serial dilutions. 
       Proteomic Analysis of Strains SCHU S4, SCHU AV and ΔFTT0918. 
       [0044]      Francisella  strains were plated for single colony growth on CHAH agar. At 72 h of incubation 200 colonies of one or other strain were resuspended in 12 times the estimated pellet volume of lysis solution (7 M urea, 2 M thiourea, 1% (w/v) DTT, 4% (w/v) CHAPS and 0.5% (w/v) ASB-14. Cell pellets were resuspended by vortexing, then were shaken for 30 minutes at room temperature and then incubated for at least four hours at 4° C. Unlysed cells and cell debris were removed by centrifugation at 14,000 g for 10 min. The supernatants were checked for sterility and stored at −20° C. until required. Protein concentrations of the extracts were determined using the RC-DC protein assay (Bio-Rad) or a modified Bradford Assay. 
         [0045]    The extracted proteins were separated in the first dimension using either linear pH 4-7 gradient Ready Strips, 17 cm (Biorad, California, USA) or linear pH 6-11 gradient Immobiline drystrips, 18 cm (Amersham Biosciences, Uppsala, Sweden). In each case 100-300 μg of each protein solution was diluted in 350 μl of rehydration buffer (7 M urea, 2 M thiourea, 4% CHAPS, 0.5% ASB-14, 1% DTT, 1% v/v Pharmalyte pH 3-10 or pH 6-11, 0.003% Orange G). For ioselectric focusing in the basic pH range (pH 6-11) protein solutions were treated with Destreak Rehydration Solution (Amersham Biosciences) as per the manufacturer&#39;s instructions, prior to rehydration of the immobilized pH gradient strips (IPG). The samples were incubated for 1 hour with shaking, and then centrifuged at 10,000 g for 10 minutes. Proteins were loaded onto the IPG strips by in-gel rehydration overnight. Isoelectric focusing was conducted using a Protean IEF Cell (Bio-Rad). Proteins were focused at 200 V for 1 h, 500 V for 1 h, 5000 V for 5 h and then 5000 V for a total of 80 kVh. Next, IPG strips were equilibrated in 6 M urea, 50 mM Tris, pH 8.8, 30% w/v glycerol, 2% w/v SDS and 1 w/v % DTT for 20 minutes. The IPG strips were then equilibrated for another 20 minutes in the same solution containing 4% w/v iodoacetamide instead of DTT. Strips were then embedded on top of an SDS-PAGE gel (12% polyacrylamide; 190×190×1.5 mm gel) using 0.5% w/v agarose 0.003% w/v bromophenol blue. Electrophoresis was then carried out using the Protean IIxi System with XL conversion kit (Bio-Rad) at 24 mA per gel for 5 hours. Following second dimension electrophoresis, gels were fixed for 1 hour in 10% v/v methanol, 7% v/v acetic acid, then stained overnight with Sypro Ruby (Bio-Rad). Background staining was removed by two 30 minute washes in 10% v/v methanol, 7% v/v acetic acid, prior to imaging with the Fluor-S MultiImager (Bio-Rad). The gels were then stained with silver nitrate, scanned and analyzed a second time. 
         [0046]    Images of the scanned gels were made using PDQuest software (Bio-Rad). At least 4 replicate gel sets were run for each bacterial strain. Spot positions were matched between replicate gel sets and both matched and unmatched spots checked manually. Spots were considered absent if unmatched in all gel sets. Differential expression was considered greater than two-fold spot intensity difference after normalization of spot intensities. Protein spots consistently identified as being differentially expressed between strains were excised and cut into 1 mm cubes and placed in microcentrifuge tubes. Gel pieces were destained with 30 mM ferricyanide, 100 mM sodium thiosulphate for 5 minutes, and then washed three times with water. The gel pieces were dehydrated repeatedly with 100% acetonitrile, until the pieces blanched and became hard. Acetonitrile was then removed and gel pieces air-dried under a laminar flow hood. 20 μL of 20 ng/mL trypsin in 50 mM ammonium bicarbonate was then added to each tube and gel pieces incubated at 37° C. for 16 hours. Peptides were extracted from the gel pieces by sonication for 10 minutes. 
         [0047]    The in-gel digests were analysed by nano-liquid chromatography-MS/MS using a ‘CapLC’ capillary chromatography system (Waters) coupled to a ‘QTOF Ultima’ hybrid quadrupole time-of-flight mass spectrometer (Waters). Peptide extracts were injected on a 75 μm internal diameter×150 mm PepMap C 18  nanocolumn (Dionex/LC packings) and resolved by gradient elution (5-75% acetonitrile, 0.12% formic acid in 30 minutes, 350 nl/min). MS/MS spectra were acquired on doubly, triply and quadruply charged ions. The experimentally collected MS/MS spectra were matched against the  Francisella  strain Schu 4 genome sequence using Mascot Daemon™. Results were evaluated according to the Mascot score, number of peptides identified and quality of MS/MS matching. A protein identification was considered positive if at least one peptide, with a Mascot score greater than 25 was matched. 
         [0048]    Genomic characterization of strain SCHU AV. The chromosomal regions that contained the genes encoding the proteins altered or missing in strain SCHU AV were analyzed in detail by a combination of bioinformatic analysis of the published genome of the SCHU S4 strain and by PCR amplification and sequencing of the regions in strains SCHU AV and SCHU S4. 
         [0049]    Administration of bacteria to mice. Specific-pathogen-free female BALB/c mice were purchased from Charles River Laboratories (St. Constant, Que.). Mice were maintained and used in accordance with the recommendations of the Canadian Council on Animal Care Guide to the Care and Use of Experimental Animals. Strain FSC 033 was found to be more virulent for mice than the SCHU S4 isolate used to generate the mutants of the present study since a 10 CFU intradermal (i.d.) challenge of the former kills mice 1-2 days earlier than the same challenge with the latter strain. Therefore, strain FSC033 was used as the wild-type challenge strain for all of the efficacy studies conducted herein. For aerosol exposure, thawed  F. tularensis  strain FSC033 was diluted in Mueller Hinton broth containing 20% (w/v) glycerol to a concentration of approximately 108/CFU ml; for intradermal inoculations stocks were diluted in sterile saline. Actual concentrations of inocula were determined by plating 10-fold serial dilutions on CHAH. 
         [0050]    Intradermal inocula (50 μl/mouse) were injected into the shaved mid-belly. Aerosols containing strain FSC033 were generated with a Lovelace™ nebuliser operating at a pressure of 40 p.s.i. to produce particles in the 4-6 μm range required for inhalation and retention in the alveoli. Mice were exposed to these aerosols for 7 min using a commercial nose-only exposure apparatus (In-tox Products, Albuquerque, N. Mex.). In each experiment, the generated aerosol was delivered to the exposure ports at a flow rate of 15 l/min, and at 80% relative humidity. This protocol results in the delivery of ˜20 CFU to the lower airways of BALB/c mice. Aerosol exposures and i.d. challenges were performed in a federally-licensed small animal containment level 3 facility. Strain FSC033 was routinely lethal for naïve BALB/c mice following intradermal or aerosol challenge with 10 or fewer CFU. In the present study, mice were examined daily for signs of infection. Whenever feasible, mice were euthanized by CO 2  asphyxiation as soon as they displayed signs of irreversible morbidity. In our experience such mice were at most 24 hours from death, and time to death of these animals was estimated on this premise. 
         [0051]    A spontaneous mutant, SCHU AV of strain SCHU S4 is attenuated in vitro and in vivo but affords effective protection against challenge with virulent type A strain, FSC033. Screening of the  Francisella  Strain Collection (FSC) revealed an attenuated strain, FSC043, derived from the prototypic subspecies  tularensis  strain, SCHU S4. This strain, henceforth designated SCHU AV (avirulent), was found to be markedly attenuated for multiplication in PEC (Table 1) and J774 cells. In fact, a rapid decline was observed within 6 h of exposure to these macrophage populations, but thereafter some intracellular multiplication occurred up to 12 h. Eradication occurred within 24 h. In contrast, the number of intracellular SCHU S4 bacteria increased 2 log 10  within 12 h. Thereafter, a decline was seen. However, during this phase of the infection with virulent but not attenuated  F. tularensis , a cytopathogenic effect was observed morphologically. Thus, the rapid intracellular multiplication of the strain confers a rapid cytopathogenic effect and most likely, this explains the decrease in intracellular numbers of virulent bacteria after 12 h. 
         [0052]    In several separate experiments BALB/c mice were challenged intradermally with 10 2 -10 8  CFU of SCHU AV or LVS. All LVS challenged BALB/c mice displayed overt signs of illness between days 4-11 (hunched gait, pilo-erection, lethargy) and some mice inoculated with 10 7  or 108 CFU died by day 8 of infection. No other mice died during the next 28 days. In contrast, only mice challenged with &gt;10 6  CFU of SCHU AV displayed such signs of infection and no mice inoculated with this strain died at any test dose. 
         [0053]    To further examine the relative virulence of LVS and SCHU AV, BALB/c mice were intradermally challenged with 10 6  CFU of one or other strain, killed on day 4 of infection and bacterial burdens in the skin, liver, and spleen determined (Table 2). By this time, LVS was present at higher levels than SCHU AV in the skin, liver, and spleen. Moreover, large macroscopic skin lesions were visible at the site of inoculation of LVS, but not SCHU AV by this time ( FIG. 1 ). Similarly, when inoculated intravenously, SCHU AV grew less than virulent type A or B strains or LVS in the livers, spleens, and lungs of mice (Table 3). 
         [0054]    BALB/c mice were intradermally inoculated with 10 6  CFU of LVS or SCHU AV. The former mice showed overt signs of disease between days 3-6 of infection whereas the latter mice remained healthy. All immunized mice survived and were challenged 77 days later intradermally or by aerosol with subsp.  tularensis  strain FSC 033 (Table 4). It has been shown that immunization of BALB/c mice with LVS leads to excellent protection against intradermal challenge but only weak protection against low dose aerosol challenge (see also Table 4). The SCHU AV immunization afforded as good protection as LVS against intradermal challenge and better protection against aerosol challenge. 
         [0055]    Groups of mice (n=3) were challenged intradermally with 150 CFU of strain FSC033 120 days after immunization with LVS or SCHU AV. Mice were killed on day 3 of infection and  Francisella  burdens in livers, spleens, and lungs determined (Table 5). Numbers in parentheses show the proportion of organs infected. Again, this study showed that SCHU AV immunization was at least as effective as LVS immunization at controlling disseminated infection with a type A strain. 
       Proteomic Analysis of Strain SCHU AV. 
       [0056]    Two-dimensional gel electrophoresis (2D-PAGE) was used to compare the proteomes of the virulent SCHU S4, and attenuated SCHU AV. Protein spots that exhibited an intensity difference of at least two-fold between strains were excised and identified by mass spectrometric analysis of their in-gel tryptic digests. Gels in the pH ranges 4-7 and 6-11 were run. The majority of the protein spots resolved in the pH range 4-7, and within this range a total 10 spots were identified in SCHU AV as differing in abundance or absent when compared to the virulent SCHU S4. Six spots were undetectable and three were decreased in abundance in comparison to SCHU S4. The putative identities of these proteins are shown in Table 6. In contrast, one spot (35) was observed only in SCHU AV ( FIG. 2 ). The protein spot was found to contain peptides corresponding to two proteins, FTT0918 and FTT 0919, found in the parental strain. Both are identified as hypothetical proteins with no known homology to other proteins and no assigned function. FTT0918 was also identified as spot 30 in the parental strain ( FIG. 2 ). MS analysis for spot 30 showed a good peptide coverage throughout the protein sequence ( FIG. 2 ). In contrast, MS analysis of SCHU AV spot 35 identified peptides confined to the first half of FTT0919 amino acid sequence and the second half of FTT0918 amino acid sequence. The genes corresponding to these two proteins are in close proximity on the chromosome; FTT0918 is coded from 927667-929340 b.p. and FTT0919 from 9292357-930802 b.p. Thus, it appears that a deletion mutation overlapping these genes resulted in the creation of a novel gene coding for a hybrid protein corresponding to the N terminus of FTT0918 and the C terminus of FTT019. We have found evidence for the presence of a similar hybrid protein in LVS, and the hybrid gene for this protein is reported in the current LVS genome sequence database. 
         [0057]    Characteristics of defined mutants of strain SCHU S4. The two genes found to be partially missing in both strains LVS and SCHU AV were subjected to the deletion strategy using plasmid pPV and both mutants were obtained in strain SCHU S4. Additionally, the ΔigIC gene that when deleted from LVS resulted in its further attenuation to complete avirulence for mice was deleted from SCHU S4. 
         [0058]    Defined mutant ΔFTT0919 missing the gene coding for protein FTT0919 remained highly virulent for mice by the i.d. route (i.d. LD 50 &lt;50 CFU), and so was not further evaluated as a live vaccine candidate. In contrast, mutant ΔFTT0918 missing the gene encoding for protein FTT0918 was highly attenuated compared to the parental strain (i.d. LD 50 -10 5  CFU versus &lt;10 CFU respectively based on accumulated data from 4 separate experiments). Proteomic analysis confirmed that it lacked the expected protein spot 30 in SCHU S4 ( FIG. 2 ). When inoculated intradermally at a dose of 100 CFU, mutant ΔFTT0918 multiplied less than the parental strain and caused a much less overt tissue reaction at this site, and disseminated less to internal organs (Table 2;  FIG. 1 ). Indeed, at this test dose, it appeared as attenuated as LVS (Table 2), though the lower LD 50  of the former strain indicated it was more virulent than the latter or SCHU AV at higher doses. Likewise the fact that mutant ΔFTT0918 persisted and multiplied in PEC whereas SCHU AV was killed by these host cells suggests that the former is more virulent than the latter (Table 1). At the opposite end of the spectrum from mutant ΔFTT0919, mutant ΔigIC appears to be totally avirulent in that it failed to induce any overt disease in mice even at an i.d. dose of 10 8  CFU. Interestingly, this mutant persisted at least as well as SCHU AV in the skin, but appeared less able to disseminate to internal organs (Table 2). Mice immunized intradermally with defined mutants of  F. tularensis  were challenged 8-9 weeks later with virulent strain FSC033 by the intradermal or aerosol route respectively and their survival monitored (Table 7). Mutant ΔFTT0918 was at least as effective a live vaccine as LVS in these studies at combating a systemic challenge with virulent type A  F. tularensis  whereas mutant ΔigIC performed poorly. The fact a ΔigIC mutant of SCHU S4 was unable to act as a protective vaccine despite being severely attenuated and persisting at the site of inoculation in the skin demonstrates that attenuation per se is not a sufficient criterion by which to determine utility. Against an aerosol challenge, all mice immunized with mutant ΔFTT0918 survived longer than any of those immunized with LVS. 
         [0059]    In vitro, mutant ΔFTT0918 was better able to survive and replicate in PEC than SCHU AV (Table 1). However, it was much more susceptible than the latter to peroxynitrite-mediated killing (Table 8). 
         [0060]    It is understood that the examples described above in no way serve to limit the true scope of this invention, but rather are presented for illustrative purposes. 
       REFERENCES 
       [0061]    Inclusion of a reference is neither an admission nor a suggestion that it is relevant to the patentability of anything disclosed herein
   Sjostedt A. Virulence determinants and protective antigens of  Francisella tularensis . Curr Opin Microbiol 2003; 6: 66-71.   Eigelsbach H T, Downs C. Prophylactic effectiveness of live and killed tularemia vaccines. I. Production of vaccine and evaluation in the white mouse and guinea pig. J Immunol 1961; 87:415-25.   Saslaw S, Eigelsbach H T, Prior J A, Wilson H E, Carhart S. Tularemia vaccine study II. Respiratory challenge. Arch Int Med 1961; 107: 702-14.   Saslaw S, Eigelsbach H T, Wilson H E, Prior J A, Carhart S. Tularemia vaccine study. I. Intracutaneous challenge. Arch Int Med 1961; 107: 689-701.   Burke D S. Immunization against tularemia: Analysis of the effectiveness of live  Francisella tularensis  vaccine in prevention of laboratory-acquired tularemia. J Infect Dis 1977; 135:55-60.   Conlan J W. 2004. Vaccines against  Francisella tularensis —past, present and future. Expert Review of Vaccines. 3: 307-314.   Eigelsbach H T, Tulis J, Overholt E L, Griffith W R. Aerogenic immunization of the monkey and guinea pig with live tularemia vaccine. Proc. Soc Exptl Biol Med 1961; 108: 732-34.   Hornick R B, Eigelsbach H T. Aerogenic immunization of man with live tularemia vaccine. Bact Revs 1966; 30:532-38.   Conlan J W, Shen H, KuoLee R, Zhao X, and Chen W. 2005. Aerosol-, but not intradermal-immunization with the live vaccine strain of  Francisella tularensis  protects mice against subsequent aerosol challenge with a highly virulent type A strain of the pathogen by an αβ T cell- and interferon gamma-dependent mechanism. Vaccine 2005; 23: 2477-2485.   Johansson A, Ibrahim A, Goransson I, Eriksson U, Gurycova D, Clarridge J E, Sjostedt A. Evaluation of PCR-based methods for discrimination of  Francisella  species and subspecies and development of a specific PCR that distinguishes the two major subspecies of  Francisella tularensis . J Clin Micro 2000; 38: 4180-85.   Golovliov I, Sjostedt A, Mokrievich A, Pavlov V. A method for allelic replacement in  Francisella tularensis . FEMS Microbiol Lett 2003; 222: 273-280.   Conlan J W, Chen W, Shen H, Webb A, KuoLee R. Experimental tularemia in mice challenged by aerosol or intradermally with virulent strains of  Francisella tularensis : Bacteriologic and histopathologic studies. Microb Pathog 2003; 34: 239-48.   Golovliov, I., Ericsson, M., Sandstrom, G., Tärnvik, A., and Sjöstedt, A. Identification of proteins of  Francisella tularensis  induced during growth in macrophages and cloning of the gene encoding a prominently induced 23-kilodalton protein. Infect Immun 1997; 65, 2183-2189.   Lai X, Golovliov I, Sjostedt A. Expression of IgIC is necessary for intracellular growth and induction of apoptosis in murine macrophages by  Francisella tularensis . Microbial Pathogenesis 2004; 37: 225-30.   Lindgren H, Golovliov I, Baranov V, Ernst R K, Telepnev M, Sjostedt A. Factors affecting the escape of  Francisella tularensis  from the phagolysosome. J Med Micro 2004; 53: 1-6.   
 
         [0077]    Lauriano C M, Barker J R, Yoon S-S, Nano F E, Arulanandam B P, Hassett D J, Klose K E. MgIA regulates transcription of virulence factors necessary for  Francisella tularensis  intraamoebae and intramacrophage survival. PNAS 2004; 101: 4246-4249. 
         [0000]    
       
         
               
             
               
               
               
             
               
               
               
               
               
               
             
               
               
               
               
               
               
             
           
               
                 TABLE 1 
               
             
             
               
                   
               
               
                 Viable counts in PEC infected with the indicated  F. tularensis  strain a . 
               
             
          
           
               
                   
                 No. of bacteria 
                   
               
               
                   
                 (log 10  ± SD) b   
               
             
          
           
               
                   
                 Bacterial strain a   
                 0 h 
                 6 h 
                 12 h 
                 24 h 
               
               
                   
                   
               
             
          
           
               
                   
                 SCHU S4 
                 2.5 
                 2.4 
                 4.6 
                 3.1 
               
               
                   
                 FSC043/SCHU AV 
                 2.4 
                 0.8* 
                 1.9* 
                 &lt;0.5* 
               
               
                   
                 ΔFTT0918 
                 2.7 
                 2.6 
                 3.6 
                 3.3 
               
               
                   
                   
               
               
                   
                   a The indicated  F. tularensis  strain was allowed to infect the cells at MOI 100. 
               
               
                   
                   b Data represent the mean log 10  CFU ± SD of 3 cultures. 
               
               
                   
                 *Indicates that the CFU is significantly higher (p &lt; 0.05, Wilcoxon asymptotic test) than the value at 0 h. 
               
             
          
         
       
     
         [0000]    
       
         
               
             
               
               
               
             
               
               
               
               
               
             
           
               
                 TABLE 2 
               
             
             
               
                   
               
               
                 Growth of  F. tularensis  strains in host tissues following 
               
               
                 intradermal inoculation of the pathogen. 
               
             
          
           
               
                   
                   
                 Log 10  ± SD CFU of  Francisella  in 
               
               
                 
                   F. tularensis 
                 
                 Intradermal 
                 tissues on day 4 of infection (n = 3) a   
               
             
          
           
               
                 strain 
                 inoculum 
                 skin 
                 liver 
                 spleen 
               
               
                   
               
               
                 SCHU AV 
                 10 6  CFU 
                 4.00 ± 0.48 
                 3.81 ± 0.08 
                 4.57 ± 0.09 
               
               
                 LVS 
                 10 6  CFU 
                 6.28 ± 0.21 
                 5.76 ± 0.50 
                 5.88 ± 0.47 
               
               
                 ΔiglC mutant 
                 10 6  CFU 
                 5.31 ± 0.43 
                 2.30 (1/3) b   
                 3.09 ± 0.69 
               
               
                 SCHU S4 
                 10 2  CFU 
                 7.37 ± 0.40 
                 7.09 ± 0.83 
                 7.77 ± 0.91 
               
               
                 LVS 
                 10 2  CFU 
                 6.65 ± 0.58 
                 3.65 ± 1.10 
                 4.37 (2/3) c   
               
               
                 ΔFTT0918 
                 10 2  CFU 
                 5.66 ± 0.73 
                 3.50 ± 0.29 
                 4.36 ± 1.33 
               
               
                 mutant 
               
               
                   
               
               
                   a In separate experiments, mice were inoculated intradermally with either 10 6  or 10 2  CFU of the stated F. tularensis strain. Mice were killed on day 4 of infection and bacterial burdens determined. 
               
               
                   b Bacteria only detected in 1/3 organs; 
               
               
                   c Bacteria only detected in 2/3 organs (lower detection limit = 200 CFU/organ). 
               
             
          
         
       
     
         [0000]    
       
         
               
             
               
               
             
               
               
               
               
               
             
           
               
                 TABLE 3 
               
             
             
               
                   
               
               
                 Growth of  F. tularensis  strains in host tissues following 
               
               
                 intravenous inoculation of the pathogen. 
               
             
          
           
               
                 
                   F. tularensis 
                 
                 Log 10  ± SD CFU  F. tularensis /organ (n = 3) 
               
             
          
           
               
                 strain 
                 lung 
                 liver 
                 spleen 
                 blood* 
               
               
                   
               
               
                 FSC033 
                 &gt;8.0 
                 &gt;9.0 
                 &gt;9.0 
                 &gt;8.0 
               
               
                 (type A) 
               
               
                 FSC108 
                 3.97 ± 0.34 
                 7.26 ± 0.32 
                 7.35 ± 0.20 
                 3.58 ± 0.77 
               
               
                 (type B) 
               
               
                 LVS 
                 2.31 ± 1.02 
                 5.03 ± 0.12 
                 5.18 ± 0.12 
                 &lt;2.00 (0/3) 
               
               
                 (attenuated 
               
               
                 type B) 
               
               
                 SCHU AV 
                 &lt;1.3 (0/3) 
                 &lt;2.3 (2/3) 
                 3.16 ± 0.66 
                 &lt;2.00 (0/3) 
               
               
                 (attenuated 
               
               
                 type A) 
               
               
                   
               
               
                   a Approximately 100 CFU of the indicated strains of  F. tularensis  were intravenously inoculated into BALB/c mice (n = 3 per group), and bacterial burdens in organs on day 3 of infection were determined. 
               
               
                   b CFU/ml of blood. Numbers in parentheses indicate proportion of organs infected. 
               
             
          
         
       
     
         [0000]    
       
         
               
             
               
               
               
               
             
               
               
               
               
             
           
               
                 TABLE 4 
               
             
             
               
                   
               
               
                 Protective immunity against strain FSC033 (type A; subsp. 
               
               
                   tularensis ) elicited by intradermal immunization with LVS 
               
               
                 or SCHU AV a . 
               
             
          
           
               
                   
                   
                   
                 Median time 
               
               
                 Immunizing 
                 Challenge route 
                 Individual times 
                 to death 
               
               
                 strain 
                 and dose 
                 to death (days) 
                 (days) 
               
               
                   
               
             
          
           
               
                 None 
                 i.d. 10 CFU 
                 5, 5, 6, 6, 6 
                 6 
               
               
                 LVS 
                 i.d. 1000 CFU 
                 5, &gt;35, &gt;35, &gt;35, &gt;35 
                 &gt;35 
               
               
                 SCHU AV 
                 i.d. 1000 CFU 
                 11, 12, &gt;35, &gt;35, &gt;35 
                 &gt;35 
               
               
                 None 
                 aerosol ~10 CFU 
                 5, 5, 5, 5, 6 
                 5 
               
               
                 LVS 
                 aerosol ~10 CFU 
                 6, 6, 11, 13, &gt;35 
                 11 
               
               
                 SCHU AV 
                 aerosol ~10 CFU 
                 5, 7, &gt;35, &gt;35, &gt;35 
                 &gt;35 
               
               
                   
               
               
                   a Mice immunized 77 days earlier by id inoculation with 10 6  CFU LVS or SCHU AV and age-matched controls were challenged intradermally or by aerosol with various doses of virulent type A  F. tularensis  strain 33, and survival monitored. 
               
             
          
         
       
     
         [0000]    
       
         
               
             
               
               
               
             
               
               
               
               
               
             
           
               
                 TABLE 5 
               
             
             
               
                   
               
               
                 Growth of virulent strain FSC033 in organs of control mice and 
               
               
                 mice vaccinated with LVS or SCHU AV a . 
               
             
          
           
               
                   
                   
                   Francisella  burden on day 3 of infection 
               
               
                   
                 Immunizing 
                 (mean log 10  ± SD) 
               
             
          
           
               
                   
                 strain 
                 Lungs 
                 liver 
                 Spleen 
               
               
                   
                   
               
               
                   
                 None 
                 5.18 ± 2.03 
                 7.49 ± 0.86 
                 8.33 ± 1.13 
               
               
                   
                 LVS 
                 &lt;1.30 (0/3) 
                 2.91 ± 0.41 
                 3.62 ± 0.25 
               
               
                   
                 SCHU AV 
                  &lt;1.3 (0/3) 
                 &lt;2.25 (1/3) 
                 2.63 ± 1.74 
               
               
                   
                   
               
               
                   
                   a mice (n = 3/group) immunized 120 days earlier with 10 6  CFU of LVS or SCHU AV were challenged intradermally 120 days later with 150 CFU of  F. tularensis  type A strain FSC033. Mice were killed on day 3 of infection and  Francisella  burdens in livers, spleens, and lungs determined. 
               
               
                   
                 Numbers in parentheses show the proportion of organs infected. 
               
             
          
         
       
     
         [0000]    
       
         
               
             
               
               
             
               
               
               
               
               
               
               
             
               
             
               
               
               
               
               
               
               
             
               
             
               
               
               
               
               
               
               
             
               
             
               
               
               
               
               
               
               
             
           
               
                 TABLE 6 
               
             
             
               
                   
               
               
                 Differentially expressed proteins 
               
             
          
           
               
                   
                 Protein Product 
               
             
          
           
               
                 Spot No. a   
                 MW, p/ 
                 Observed 
                 Mascot 
                 Sequence 
                   
                 Protein 
               
               
                 (FTT No.) b   
                 Theoretical c   
                 MW, pI d   
                 Score e   
                 Coverage f   
                 Protein Name g   
                 i.d.. h   
               
               
                   
               
             
          
           
               
                 Protein Spots Not Observed in SCHU AV 
               
             
          
           
               
                  2 (1355) 
                 22.1, 6.77 
                 18.2, 6.05 
                 132 
                 20 
                 Conserved 
                 YP_170307.1 
               
               
                   
                   
                   
                   
                   
                 hypothetical protein 
               
               
                  6 (0049/0192) 
                 55.1, 4.49 
                 61.4, 4.85 
                 774 
                 41 
                 N utilization 
                 YP_169124.1 
               
               
                   
                   
                   
                   
                   
                 substance protein A 
               
               
                   
                 66.2, 5.55 
                 61.4, 4.85 
                  60 
                  3 
                 Lysyl-tRNA 
                 YP_169253.1 
               
               
                   
                   
                   
                   
                   
                 synthetase 
               
               
                 22 (0655) 
                 26.8, 4.68 
                 34.9, 4.70 
                 450 
                 41 
                 Hypothetical protein 
                 YP_169673.1 
               
               
                 28 (0409) 
                 49.6, 5.77 
                 50.0, 6.16 
                 108 
                 18 
                 Glycine cleavage 
                 YP_169454.1 
               
               
                   
                   
                   
                   
                   
                 system P protein, 
               
               
                   
                   
                   
                   
                   
                 subunit 1 
               
               
                 30 (0918) 
                 58.7, 4.75 
                 56.6, 4.45 
                 263 
                 14 
                 Hypothetical protein 
                 YP_169915.1 
               
               
                 31 (0007/1129c) 
                 66.9, 5.49 
                 67.0, 5.85 
                 826 
                 42 
                 Aspartyl-tRNA 
                 YP_169088.1 
               
               
                   
                   
                   
                   
                   
                 synthetase 
               
               
                   
                 63.0, 5.46 
                 67.0, 5.85 
                 493 
                 35 
                 Cyanophycin 
                 YP_170102.1 
               
               
                   
                   
                   
                   
                   
                 synthetase 
               
             
          
           
               
                 Protein Spots with decreased abundance in SCHU AV 
               
             
          
           
               
                 19 (0721c) 
                 82.4, 5.37 
                 83.0, 5.61 
                 709 
                 35 
                 Peroxidase/catalase 
                 YP_169735.1 
               
               
                 21 (0223c) 
                 25.8, 5.36 
                 26.2, 5.72 
                 202 
                 27 
                 Lactam utilization 
                 YP_169278.1 
               
               
                   
                   
                   
                   
                   
                 protein 
               
               
                 29 (0036/0438) 
                 46.2, 5.61 
                 47.5, 5.99 
                 431 
                 27 
                 NADH 
                 YP_169112.1 
               
               
                   
                   
                   
                   
                   
                 dehydrogenase I, F 
               
               
                   
                   
                   
                   
                   
                 subunit 
               
               
                   
                 51.5, 5.58 
                 47.5, 5.99 
                 167 
                 10 
                 UDP-N- 
                 YP_169478.1 
               
               
                   
                   
                   
                   
                   
                 acetylmuramate: L- 
               
               
                   
                   
                   
                   
                   
                 alanyl-gamma-D- 
               
               
                   
                   
                   
                   
                   
                 glutamyl-me so- 
               
               
                   
                   
                   
                   
                   
                 diaminopimelate 
               
               
                   
                   
                   
                   
                   
                 ligase 
               
             
          
           
               
                 Protein Spots Uniquely expressed in SCHU AV 
               
             
          
           
               
                 35 (0918/0919) 
                 58.7, 4.75 
                 55.0, 5.02 
                 211 
                 11 
                 Hypothetical protein 
                 YP_169915.1 
               
               
                   
                 52.8, 5.16 
                 55.0, 5.02 
                 252 
                 14 
                 Hypothetical protein 
                 YP_169916.1 
               
               
                   
               
               
                 Proteins were identified by LC-MS/MS. Mascot (Matrix Science, London, UK) was then used to match the MS/MS spectra against the translated  Francisella  genome sequence (Refseq: NC_006570). Proteins listed are those that were observed to be differentially expressed when comparing the proteome maps of strains SCHU S4 and SCHU AV. 
               
               
                   a Number used to annotate spot on 2DE proteome maps 
               
               
                   b   Francisella  genome locus tag (FTTxxxx) 
               
               
                   c Theoretical molecular mass (kDa) and pI, calculated from the amino acid sequence of the translated open reading frame 
               
               
                   d Experimental molecular mass (kDa) and pI, estimated using PDQuest software 
               
               
                   e Total Mascot Score for peptides identified. A score of &gt;30 was required for positive identification each individual polypeptide 
               
               
                   f Sequence coverage, based on the peptides identified 
               
               
                   g Name of identified protein, based upon  Francisella  genome sequence 
               
               
                   h Accession number according to the NCBI 
               
             
          
         
       
     
         [0000]    
       
         
               
             
               
               
               
               
             
               
               
               
               
             
           
               
                 TABLE 7 
               
             
             
               
                   
               
               
                 Protective immunity against strain FSC033 (type A; subsp. 
               
               
                   tularensis ) elicited by intradermal immunization with LVS 
               
               
                 or defined mutants of SCHU S4. 
               
             
          
           
               
                   
                   
                   
                 Median 
               
               
                   
                   
                   
                 time 
               
               
                 Immunizing strain 
                 Challenge route 
                 Individual times to 
                 to death 
               
               
                 (dose) 
                 and dose 
                 death (days) 
                 (days) 
               
               
                   
               
             
          
           
               
                 None 
                 i.d. 10 CFU 
                 4, 4, 5, 5, 5 
                 5 
               
               
                 LVS (10 6 ) 
                 i.d. 500 CFU 
                 &gt;35, &gt;35, &gt;35, &gt;35, &gt;35 
                 &gt;35 
               
               
                 ΔFTT0918 mutant 
                 i.d. 500 CFU 
                 &gt;35, &gt;35, &gt;35, &gt;35, &gt;35 
                 &gt;35 
               
               
                 (10 5-6 ) 
               
               
                 ΔiglC mutant 
                 i.d. 500 CFU 
                 4, 7, 7, 7, 8 
                 7 
               
               
                 (10 6 ) 
               
               
                 None 
                 aerosol ~10 
                 4, 5, 5, 5, 5 
                 5 
               
               
                   
                 CFU 
               
               
                 LVS (10 7 ) 
                 aerosol ~10 
                 5, 7, 7, 7 
                 7 
               
               
                   
                 CFU 
               
               
                 ΔFTT0918 mutant 
                 aerosol ~10 
                 9, 11, 11, 19, &gt;30, &gt;30 
                 15 
               
               
                 (10 5-6 ) 
                 CFU 
               
               
                 ΔiglC mutant 
                 aerosol ~10 
                 5, 5, 6, 6, 6 
                 6 
               
               
                 (10 7 ) 
                 CFU 
               
               
                   
               
               
                   a Mice (n = 4-6) immunized by intradermal inoculation with the indicated strain and age-matched control mice were challenged intradermally 8 weeks later with ~500 CFU of type A strain FSC033, or by aerosol 9 weeks later with ~10 CFU of FSC033 and survival monitored. 
               
             
          
         
       
     
         [0000]    
       
         
               
             
               
               
               
             
               
               
               
               
               
             
               
               
               
               
               
             
           
               
                 TABLE 8 
               
             
             
               
                   
               
               
                 Survival of  F. tularensis  strains in PBS when exposed to SIN-1. 
               
             
          
           
               
                   
                 No. of bacteria 
                   
               
               
                   
                 (log 10  CFU) a   
               
             
          
           
               
                   
                 Bacterial strain 
                 SIN-1 
                 0 h 
                 4 h 
               
               
                   
                   
               
             
          
           
               
                   
                 SCHU S4 
                 − 
                 6.9 
                 7.0 
               
               
                   
                 SCHU S4 
                 + 
                 6.9 
                 6.6 
               
               
                   
                 FSC043 
                 − 
                 6.9 
                 6.9 
               
               
                   
                 FSC043 
                 + 
                 6.9 
                 6.3 
               
               
                   
                 ΔFTT0918 
                 − 
                 6.7 
                 6.4 
               
               
                   
                 ΔFTT0918 
                 + 
                 6.7 
                 4.1* 
               
               
                   
                   
               
               
                   
                   a   F. tularensis  bacteria were exposed to SIN-1 (0.8 mM) for 4 h at 37° C. Thereafter, viable counts were determined by plating of bacteria. 
               
               
                   
                 *indicates that P &lt; 0.05 according to Wilcoxon&#39;s non-parametric test when compared to SIN-1-treated SCHU S¤ bacteria. 
               
             
          
         
       
     
         [0000]    
       
         
               
             
               
               
             
           
               
                 TABLE 9 
               
               
                   
               
               
                 Nucleotide sequence of FTT0918 
               
               
                   
               
             
             
               
                   
               
             
          
           
               
                 The gene sequence has been deposited as part of 
                   
               
               
                 the complete genome of  Francisella tularensis   
               
               
                 strain SCHU S4 (accession number  AJ749949 ). 
               
               
                 The deduced protein has the identification 
               
               
                   CAG45551.1 . 
               
               
                   
               
               
                 Number of nucleotides: 1674 
               
               
                   
               
               
                 Number of putative encoded amino acids: 557 
               
               
                   
               
               
                 Molecular weight: 58713.5 
               
               
                   
               
               
                 The following information is contained in GenBank: 
               
               
                 Position: 927667 . . . 929340 
               
               
                   
               
               
                 /locus_tag = “FTT0918” 
               
               
                   
               
               
                 /note = “ORF ftt0918” 
               
               
                   
               
               
                 /codon_start = 1 
               
               
                   
               
               
                 /transl_table =  11   
               
               
                   
               
               
                 /product = “hypothetical protein” 
               
               
                   
               
               
                 /protein_id = “ CAG45551.1 ” 
               
               
                   
               
               
                 /db_xref = “GI: 56604511” 
               
               
                   
               
               
                 /db_xref = “UniProt/TrEMBL:  Q5NGC7 “ 
               
               
                   
               
               
                 GTGGTGCGTAAATTTAAAAAAACCTGTTTGATAGTTAGTAGTTTATTGGC 
               
               
                   
               
               
                 TTGTAGTGGTTTAGCTTATTCTGAAGATTCTCCTCAAGTTGTTTCACAAG 
               
               
                   
               
               
                 GGGGGCCTCTTGGAGCTACTAGTATTGGTGATCAAAACCTTGGACAGCCA 
               
               
                   
               
               
                 GATCCAAATGCTAGTGGAGCCTCTTCAACAACACAGACTACCGGTTCAAA 
               
               
                   
               
               
                 TCTAAATGATAGGGAACTTTTGCTAAAATTACAGCAGCAGGTACAGCAAC 
               
               
                   
               
               
                 TTCAGGGACAATTACAACAGCTAAAAGCACAGGGTAATGGTGGTGGATTA 
               
               
                   
               
               
                 CAGAATACCTATAATGGTAGTTCGCAGTTTACTACTTACAGCTCAAAAGT 
               
               
                   
               
               
                 TGATGGTAATAAAAATCCTCGTACGCTTGGAGGCAATGGTGAGAGTAAAG 
               
               
                   
               
               
                 ATCTGAGTCAGGCTTTGATTGGTGGTCAAACGTCGTCAGATATTATGGGG 
               
               
                   
               
               
                 AATGTTAATGCTAGTAACTCTATCATTAATTTAGCTTCTGAGCCATTAGG 
               
               
                   
               
               
                 AGGCGTCTTTAACCAAAAAGGCGGTATCGACGTTGGTGGAGCTCCGGCGA 
               
               
                   
               
               
                 TTACAACACAAGGTCAAGTTACCTACTTAGGTTCGTACTCTGGTAACAAC 
               
               
                   
               
               
                 AGTATTCCAATTGGTCAGATTTCTTCTAACCTTTTTGCTTCTACATTGTT 
               
               
                   
               
               
                 GGGTCAAAGAGAGAAGTTTGATGACTACTCTGTATTCTTTGGTGGCTTTA 
               
               
                   
               
               
                 TAGAAGCAGATGCCCAAGCTTGGTTTGGTAGTGCTGTTACTAAGGTGCAA 
               
               
                   
               
               
                 AATGCTGGCCAGTTATCTAGCAATGGCCAAAATATATATTTAACATCAGC 
               
               
                   
               
               
                 TAATTTATATTTCTTATCAAATCTTGGTCATTATGTAACAGCTCAGTTTG 
               
               
                   
               
               
                 ATTTTGATACTAATGAGTCAGGAAGTTTTAGTTTAGGTAATGCTTTTGTA 
               
               
                   
               
               
                 ATTTTTGGTAACTTAGATATATCACCATTCTTCGTAACAGCAGGTAGAAA 
               
               
                   
               
               
                 CAAGCTATCTGTTGGCTCATATGGTGGTGGTGGTACTTGGACTAGCGGTA 
               
               
                   
               
               
                 TCACCAAATTTCTATCACCAAATCAGGTTACTAACGTATCTATTGACTAT 
               
               
                   
               
               
                 AAAGATCAAGTCTGGAACGCCAACATTGCAGTATTTGGCTCTGATGATAG 
               
               
                   
               
               
                 ACGTGCAAACTTCTCAACAGGTTTATTCTATGCTGATAGCTGGACACCAA 
               
               
                   
               
               
                 ACTTAGCGGCTGGTTTTAACGTAGGTTATGTCTTTAATATTGCTGGTGCT 
               
               
                   
               
               
                 GGTAACTCTTCGATTGCTAACTCATTAGCTAACTTAAATCGTAGTAGTGA 
               
               
                   
               
               
                 TAATGTGGGAGCTTTAAACGTTGACGGCAACTTAACTTATGCAATTTGGG 
               
               
                   
               
               
                 ATGGATTTTTAAACTTAGGAGCAGGTTGGGCTAGTACTACGACAAAAGAA 
               
               
                   
               
               
                 GATTTTAATAATAATGGTGGTAGTGTACTTGCTGGGGCATGGTATGGAGC 
               
               
                   
               
               
                 ACTTAACTATTCTGCGATACTTGGTGGTAGAAATACTAACTTCGGTGTGA 
               
               
                   
               
               
                 CTTATGGTCAATCATATAATGCTGCAGCTATCCCAATGGAGACAGCAAAT 
               
               
                   
               
               
                 GCTTCACCAACTTTCGGTCAAACAGCATCTGGTATCAAACAGCAACTTAT 
               
               
                   
               
               
                 CTTCTCGGCTCAGCGAGCTTACTTTGATGACAATGTTCTATTTGGTCCTG 
               
               
                   
               
               
                 AATATGCGTATCAAAGACTATATACTGGCGAACATATGAATACAATTACT 
               
               
                   
               
               
                 CTGGATATGTCGGTATACGTATAA 
               
               
                   
               
               
                 Putative amino acid sequence: 
               
               
                 MVRKFKKTCLIVSSLLACSGLAYSEDSPQVVSQGGPLGATSIGDQNLGQP 
               
               
                   
               
               
                 DPNASGASSTTQTTGSNLNDRELLLKLQQQVQQLQGQLQQLKAQGNGGGL 
               
               
                   
               
               
                 QNTYNGSSQFTTYSSKVDGNKNPRTLGGNGESKDLSQALIGGQTSSDIMG 
               
               
                   
               
               
                 NVNASNSIINLASEPLGGVFNQKGGIDVGGAPAITTQGQVTYLGSYSGNN 
               
               
                   
               
               
                 SIPIGQISSNLFASTLLGQREKFDDYSVFFGGFIEADAQAWFGSAVTKVQ 
               
               
                   
               
               
                 NAGQLSSNGQNIYLTSANLYFLSNLGHYVTAQFDFDTNESGSFSLGNAFV 
               
               
                   
               
               
                 IFGNLDISPFFVTAGRNKLSVGSYGGGGTWTSGITKFLSPNQVTNVSIDY 
               
               
                   
               
               
                 KDQVWNANIAVFGSDDRRANFSTGLFYADSWTPNLAAGFNVGYVFNIAGA 
               
               
                   
               
               
                 GNSSIANSLANLNRSSDNVGALNVDGNLTYAIWDGFLNLGAGWASTTTKE 
               
               
                   
               
               
                 DFNNNGGSVLAGAWYGALNYSAILGGRNTNFGVTYGQSYNAAAIPMETAN 
               
               
                   
               
               
                 ASPTFGQTASGIKQQLIFSAQRAYFDDNVLFGPEYAYQRLYTGEHMNTIT 
               
               
                   
               
               
                 LDMSVYV