Abstract:
The invention relates to DNA molecules which code for the allergen Art v 1 or isoforms thereof, the sequence of the allergen, a method for the production of an Art v 1 molecule, a vector and a transformed host cell.

Description:
The present application is a 35 USC §371 application of PCT/AT99/00081 filed Mar. 25, 1999, which was published on Sep. 30, 1999 as WO 99/49045, which claims priority benefits of Austrian Application A 539/98, filed Mar. 26, 1998. 
     BACKGROUND OF THE INVENTION 
     The present invention relates to recombinant DNA molecules coding for the allergen Art v 1, to a method for preparation of a Art v 1 molecule, and to a vector and a transformed host cell. 
     Pollen of mugwort is one of the main causes of allergies in Europe in late summer (1,2). Among all patients suffering from pollinosis, the incidence of allergic disease caused by mugwort pollen is between 10 and 14% (2,3). Immunoblots of total protein from extracts of mugwort pollen show that the patients&#39; IgE recognize a major allergen of 27–29 kDa, which is therefore called Art v 1. Over 95% of all patients that are allergic against mugwort pollen, recognize Art v 1 in an IgE immunoblot. Such blots will be called “patient blots” from here on. Several other proteins in mugwort pollen extract migrate at the same apparent Mr of 27–29 kDa. It was therefore difficult to isolate a cDNA clone and proof that it codes for Art v 1. 
     Object of the invention is to provide a recombinant DNA molecule that codes for the allergen of pollen from  Artemisia vulgaris.    
     SUMMARY OF THE INVENTION 
     According to the invention, this is achieved in a way that a recombinant DNA molecule is created which codes for the allergen Art v 1a, which has the sequence shown in SEQ ID NO:2. This means that the major allergen of  Artemisia vulgaris  was found and made accessible for diagnose and therapy, respectively. Those DNA molecules are characterized by the nucleotide sequence according to SEQ ID NO:1. Those molecules can as well be derived from amino acid sequence according to SEQ ID NO:2 through degeneration of the genetic code. Preferentially, the molecules according to the invention can have more than 60% sequence identity with SEQ ID NO:1. In addition, the recombinant DNA molecule according to the invention can code for the amino acid sequences of the isoforms Art v 1b and Art v 1c, which have the sequences shown in SEQ ID NO:4 and 6. Those recombinant DNA molecules can have the nucleotide sequences shown in SEQ ID NO:3 and 5. The recombinant DNA molecules according to the invention can hybridize with the sequence shown in SEQ ID NO:1 and remain bound through hybridization under stringent washing conditions. 
     The same is true for the sequences shown in SEQ ID NO:3 and 5. Stringent hybridization conditions are for example 1M NaCl in H 2 0 at 60° C. and stringent washing conditions are for example 2 times washing at 50° C. in 5×SSPE and 0.1% SDS (1×SSPE is 0.18 M NaCl, 0.01M sodium phosphate pH 7.4, 1 mM EDTA). 
    
    
     
       BRIEF DESCRIPTION OF THE DRAWINGS 
         FIG. 1  shows the nucleotide sequence and derived amino acid sequence of Art v 1a as identified in SEQ ID No. 2, wherein the derived amino acid begins with the start methionine. The N-terminal signal sequence predicted by computer analysis is seen in italics; the N-terminal amino acid sequence of the natural allergen determined through Edman degradation is seen as underlined. 
         FIG. 2  shows the nucleotide sequence and derivative amino acid sequence of Art v 1 b. as identified in SEQ ID No. 4, wherein the derived amino acid sequence starts with the initiating methionine. The N-terminal signal sequence as predicted by computer analysis is seen in italics; the N-terminal amino acid sequence of the natural allergen determined through Edman degradation is seen as underlined. 
         FIG. 3  shows the shows the nucleotide sequence and derivative amino acid sequence of Art v 1c. as identified in SEQ ID No. 6, wherein the derived amino acid sequence starts with the initiating methionine. N-terminal signal sequence predicted by computer analysis is in italics; N-terminal amino acid sequence of the natural allergen as determined by Edman degradation is underlined. 
         FIG. 4  shows a comparison of the nucleotide sequence of the open reading frame of Art v 1a, Art v 1b and Art v 1c. Nucleotides not identical in all three sequences are boxed. 
         FIG. 5  shows a comparison of the derived amino acids sequence of Art v 1a, Art v 1b and Art v 1c. Amino acids identical in all three sequences are boxed. 
         FIG. 6  shows a chracterization of the purified natural allergen Art v1. part A; Coomassie-staining of three fractions containing Art v 1 (F 1, F2 and F3). These fractions were tested for their IgE binding with sera from three mugwort pollen-allergic patients (panel B). Panel C: DIG glycan/protein staining from mugwort pollen extract (lanes MP1 and MP 2), and of purified Art v 1 fractions (lanes F1, F2 and F3). C1, negative control (recombinant creatinase); C2, positive control (fetuin). 
         FIG. 7  shows construction of the expressed plasmid for Art v 1a. The Art v 1a cDNA part corresponding to the mature form of the protein was expressed in  E. coli  as a non fusion protein. 
         FIG. 8  shows the IgE immunoblot of recombinant Art v 1a (rArtv 1 a). Sera form 15 mugwort-allergic patients were tested for their IgE binding with mugwort pollen extract and rArt v 1a which was expresed in  E. coli  BL 21. Bacterial lysate of  E. coli  was used for the control which contained the expression vector pMW172 without insert. NHS: normal human serum. 
     
    
    
     A method according to the invention for the preparation of a Art v 1 allergen is characterized by the following steps:
     (a) cultivation of prokaryotic or eukaryotic host cells that contain a DNA (SEQ ID NO:1) coding for Art v 1 or DNA that has 60% sequence identity with this sequence, in a way that the Art v 1 allergen is expressed by the host cell   (b) isolation of the allergen Art v 1   

     This recombinant allergen can be glycosylated. For the method, a replicable prokaryotic or eukaryotic expression vector that contains the DNA molecules mentioned in step (a) of the method can be assigned. Such an expression vector is contained in the named host cells, which can be preferentially  Escherichia coli  or  Picchia pastoris  or of plant origin, such as tobacco ( Nicotiana ). In addition, a tobacco ( Nicotiana ) plant can comprise a eukaryotic expression vector comprising the DNA molecules of the invention. 
     The isolation of an authentic and complete cDNA clone that codes for Art v 1a ( FIG. 1 ), the major allergen of mugwort pollen is shown. The letter a in Art v 1a signifies isoform a. In addition, two further clones were isolated that code for authentic and complete isoforms of Art v 1 as well, that are called Art v 1b and Art v 1c. The sequences of the two latter isoforms are shown in  FIG. 2  and  FIG. 3 . The clones are complete in their 5′ ends because they contain the start AUG codon in a typical eukaryotic context. The clones are complete in the 3′ region because they contain 177–200 nucleotides after the stop codon, followed by the polyA + -tail. The sequences outside the open reading frame are not shown in the figures. The alignments of the nucleotide and deduced amino acid sequences of Art v 1a, b and c are shown in  FIGS. 4 and 5 , respectively. The comparisons show that Art v 1 is a mixture of different isoforms that show relatively large sequence deviations from each other, both at the nucleotide and amino acid levels. These differences are even more pronounced when the non-translated upstream and downstream parts of the nucleotide sequence are also taken into account (not shown). The number of different isoforms and of nucleotide substitutions makes it very probable that we are dealing with a gene family. The gene family is certainly not species or genus-specific because a homologous sequence has been detected in sunflower (4). The sunflower protein (SF18) is expressed in epidermal anther cells possibly indicating a pollen-specific function and displays some similarity to the gamma-purothionin family. 
     DETAILED DESCRIPTION OF PREFERRED EMBODIMENTS 
     EXAMPLES 
     The isolation of the cDNA clone coding for Art v 1a was done in the following way: 
     A cDNA expression library in the phage lambda-ZAP II (Stratagene, La Jolla, Calif.; catalogue No. 237612) was prepared. The starting material was mugwort pollen mRNA. The cDNA library was screened immunologically with a serum pool of 20 patients that had been shown to recognize Art v 1 in patient blots. A clone was isolated that reacted positively with the serum pool and on repeated re-screening gave 100% immunopositive plaques. The immune reaction to this clone was relatively weak but clearly positive. The proof that this clone codes for Art v 1 was as done as follows: 
     The major allergen Art v 1 was extracted from mugwort pollen under very mild conditions, namely room temperature and extraction with water for 15–30 min under light shaking. This extract was further separated by preparative gel electrophoresis and the fractions were tested by immunoblots.  FIG. 6   a  shows three fractions (F1, F2, and F3) that were free of Coomassie-stainable protein impurities and contained protein bands migrating at apparent Mr between 22 and 29 kDa. Occasionally, a dimeric band corresponding to about 50 kDa is also seen.  FIG. 6   b  shows the patient blots of these fractions. It is obvious that that the fraction of highest Mr binds IgE from all three patients tested while the fraction of lowest Mr is only weakly recognized by patients&#39; sera.  FIG. 6   c  was obtained after staining the same blot with the Boehringer Mannheim glycoprotein detection kit (DIG glycan/protein double labeling kit, catalogue No. 1500783). It is clear that all three fractions consist of glycoprotein. All three fractions were analyzed by N-terminal Edman degradation and yielded identical N-terminal sequences which are underlined in  FIGS. 1–3 . Computer analysis of the deduced protein sequence in  FIG. 1  according to Nielsen et al. (5) predicts Art v 1 has a typical N-terminal hydrophobic signal sequence that causes targeting to the endoplasmatic reticulum and the Golgi apparatus. The sequence after the start of the mature form of the protein predicted by this computer algorithm is identical with the N-terminal sequence found in the natural protein (underlined in  FIGS. 1–3 ). A very similar N-terminal partial sequence was found previously by Matthiesen et al. (6). It can be concluded that Art v 1 is a secreted glycoprotein, whose N-terminus was created by removal of a typical ER signal sequence. The natural protein is heterogeneous due to differences in the degree of glycosylation and the fully glycosylated form (F3 in  FIG. 6 ) binds IgE best. 
     The primary cDNA clone of Art v 1 a was used as a hybridization probe after labeling with  32 P by the random priming method. The library described above was screened with this probe and two additional clones were obtained and termed Art v 1b and Art v 1c. The clones were analyzed by DNA sequencing. The sequences are shown in  FIGS. 2 and 3 . 
       E. coli  was used to express the mature (short) form of the Art v 1a protein as a non-fusion recombinant protein after re-cloning the appropriate part of the cDNA in the expression system pMW172. It is well known that recombinant proteins expressed in  E. coli  display no postsynthetic modifications (with the possible exception of N-terminal methionine cleavage) and in particular, they do not contain sugars. The construction of the expression plasmid is shown in  FIG. 7 . The recombinant Art v 1a protein was enriched in the soluble fraction of the E. coli proteins.  FIG. 8  shows immunoblots of the soluble fraction with 15 individual patients. The apparent Mr of the natural protein is about 27 kDa ( FIG. 8 , mugwort pollen) while the apparent Mr of the recombinant protein is about 18 kDa due to the absence of glycosylation. The theoretical Mr is 10.8 kDa indicating that the recombinant protein shows a very unusual electrophoretic mobility in the SDS polyacrylamide gel electrophoresis. It is clearly seen ( FIG. 8 , rArt v 1a) that 10 of the fifteen patients&#39; IgE recognize the unglycosylated protein but patients also exist that do not recognize this form of the protein. Quite surprisingly, patients 3, 4 and 10 recognize the unglycosylated protein much better than the natural glycosylated form. The controls in  FIG. 8  show that  E. coli  proteins are not or only weakly recognized by patients and by the secondary antibody. These weak bands can be seen in all three patient blots shown in  FIG. 8 . 
     To explain the experimental results presented in the last paragraph, the following hypothesis is put forward. It can be envisioned that the sugar moieties of Art v 1 are necessary to bring the protein backbone into its natural conformation so that the IgE of some patients can bind the epitopes created in this way. Some other epitopes on the other hand can be easily recognized by the patients&#39; sera in the absence of sugar. Another less probable explanation for the above observations is that patients&#39; sera that do not recognize the unglycosylated form, in fact recognize epitope(s) consisting of sugars. 
     Preliminary Characterization of the Sugar Moieties of the Natural Major Allergen of  Artemisia vulgaris , Art v 1 
     The natural major allergen of  Artemisia vulgaris  was purified to homogeneity by the following methods:
     1. Anion exchange chromatography on Sepharose Q (Pharmacia, Uppsala, Sweden) at pH=5.2 and   2. HPLC-gel filtration chromatography on TSK-gel G2000SW (Tosohaas, Stuttgart, Germany).   

     The material was homogeneous as judged by N-terminal protein sequence and amino acid analysis, but had a heterogeneous molecular weight due to different glycosylation patterns. The molecular weight was determined by MALDI-TOF mass spectrometry and showed two broad peaks with a mean molecular mass of 13.5 kDa and 15.5 kDa, respectively. The apparent molecular weight determined by SDS-PAGE, on the other hand, was 24 to 28 kDa, which can be taken as an indication for a very unusual protein structure or for a very unusual structure of the sugar moieties. The preliminary analysis of the sugars covalently-bound to the polypeptide chain by hydrolysis and HPLC showed that no N-glycosylation and very likely also no typical 0-glycosylation are present on the Art v 1 allergen. Rather, a previously described plant 0-glycosylation on hydroxyproline residues seems to be the case. Art v 1 is a proline-rich protein (20% proline) and is postsynthetically modified so that in the mature protein proline and hydroxyproline residues are present in a ratio of 4:6. Extensive studies with five different lectins ( Galanthus nivalis  agglutinin,  Sambucus nigra  agglutinin,  Maackia amurensis  agglutinin, Peanut agglutinin, and  Datura stramonium  agglutinin) that are specific for known N-glycans and O-glycans showed that these sugar structures are not present in the Art v 1 allergen. The role of this unusual protein structure and unusual sugar moieties on the formation of B-cell epitopes of this major allergen is presently being investigated.  FIG. 8  gives the first hint that the sugar moieties might play an important role in the IgE recognition of the Art v 1 allergen. 
     REFERENCES 
     
         
         1. Charpin, J., Surinyach, R., and Frankland, A. W. (1974) Atlas of European Allergenic pollens. Sandoz, Paris. 
         2. Spieksma, F. T. M., Charpin, H., Nolard, N., and Stix, E. (1980) Clin. Allergy 10: 319–329. 
         3. Cornillon, J., Bernard, J-P., Gueho, E., and Touraine, R. (1972) Rev. Franc. Allergol. 12: 131–135. 
         4. Domon, C., Evrard, J. L., Herdenberger, F., Pillay, D. T. N., and Steinmetz, A. (1990) Plant Mol. Biol. 15: 643–646. 
         5. Nielsen, H., Engelbrecht, J., Brunak, S., and von Heijne, G. (1997) Prot. Eng. 10: 1–6. 
         6. Matthiesen, F., Ipsen, H., and Løwenstein, H. (1991)  In : Allergenic pollen and pollinosis in Europe. pp 36–44. D&#39;Amato, G., Spieksma, F. T. M., and Bonini, S. eds., Blackwell Scientific Publications, Cambridge.