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The dataset generation failed because of a cast error
Error code: DatasetGenerationCastError Exception: DatasetGenerationCastError Message: An error occurred while generating the dataset All the data files must have the same columns, but at some point there are 4 new columns ({'foreground_intensity_properties_per_channel', 'median_relative_size_after_cropping', 'shapes_after_crop', 'spacings'}) and 12 missing columns ({'numTraining', 'labels', 'release', 'training', 'name', 'licence', 'channel_names', 'reference', 'numTest', 'file_ending', 'description', 'tensorImageSize'}). This happened while the json dataset builder was generating data using hf://datasets/KagglingFace/FYP-KiTS-A-Preprocessed/dataset_fingerprint.json (at revision f91ee51ce513c0051bdc9bbcd7adec46d1099e0f) Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations) Traceback: Traceback (most recent call last): File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 2011, in _prepare_split_single writer.write_table(table) File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/arrow_writer.py", line 585, in write_table pa_table = table_cast(pa_table, self._schema) File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2302, in table_cast return cast_table_to_schema(table, schema) File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2256, in cast_table_to_schema raise CastError( datasets.table.CastError: Couldn't cast foreground_intensity_properties_per_channel: struct<0: struct<max: double, mean: double, median: double, min: double, percentile_00_5: double, percentile_99_5: double, std: double>> child 0, 0: struct<max: double, mean: double, median: double, min: double, percentile_00_5: double, percentile_99_5: double, std: double> child 0, max: double child 1, mean: double child 2, median: double child 3, min: double child 4, percentile_00_5: double child 5, percentile_99_5: double child 6, std: double median_relative_size_after_cropping: double shapes_after_crop: list<item: list<item: int64>> child 0, item: list<item: int64> child 0, item: int64 spacings: list<item: list<item: double>> child 0, item: list<item: double> child 0, item: double to {'channel_names': {'0': Value(dtype='string', id=None)}, 'description': Value(dtype='string', id=None), 'file_ending': Value(dtype='string', id=None), 'labels': {'Cortex': Value(dtype='string', id=None), 'Medulla': Value(dtype='string', id=None), 'Tumor': Value(dtype='string', id=None), 'background': Value(dtype='string', id=None)}, 'licence': Value(dtype='string', id=None), 'name': Value(dtype='string', id=None), 'numTest': Value(dtype='int64', id=None), 'numTraining': Value(dtype='int64', id=None), 'reference': Value(dtype='string', id=None), 'release': Value(dtype='string', id=None), 'tensorImageSize': Value(dtype='string', id=None), 'training': [{'image': Value(dtype='string', id=None), 'label': Value(dtype='string', id=None)}]} because column names don't match During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1316, in compute_config_parquet_and_info_response parquet_operations, partial = stream_convert_to_parquet( File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 909, in stream_convert_to_parquet builder._prepare_split( File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1882, in _prepare_split for job_id, done, content in self._prepare_split_single( File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 2013, in _prepare_split_single raise DatasetGenerationCastError.from_cast_error( datasets.exceptions.DatasetGenerationCastError: An error occurred while generating the dataset All the data files must have the same columns, but at some point there are 4 new columns ({'foreground_intensity_properties_per_channel', 'median_relative_size_after_cropping', 'shapes_after_crop', 'spacings'}) and 12 missing columns ({'numTraining', 'labels', 'release', 'training', 'name', 'licence', 'channel_names', 'reference', 'numTest', 'file_ending', 'description', 'tensorImageSize'}). This happened while the json dataset builder was generating data using hf://datasets/KagglingFace/FYP-KiTS-A-Preprocessed/dataset_fingerprint.json (at revision f91ee51ce513c0051bdc9bbcd7adec46d1099e0f) Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)
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channel_names
dict | description
string | file_ending
string | labels
dict | licence
string | name
string | numTest
int64 | numTraining
int64 | reference
string | release
string | tensorImageSize
string | training
list | foreground_intensity_properties_per_channel
dict | median_relative_size_after_cropping
float64 | shapes_after_crop
sequence | spacings
sequence | dataset_name
string | plans_name
string | original_median_spacing_after_transp
sequence | original_median_shape_after_transp
sequence | image_reader_writer
string | transpose_forward
sequence | transpose_backward
sequence | configurations
dict | experiment_planner_used
string | label_manager
string | val
sequence | train
sequence |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
{
"0": "CT"
} | kidney and kidney tumor segmentation | .nii.gz | {
"Cortex": "3",
"Medulla": "2",
"Tumor": "1",
"background": "0"
} | FYP-KiTS | 0 | 40 | Final year project KiTS data for nnunet v2 | 0.0 | 4D | [
{
"image": "./imagesTr/case_00000.nii.gz",
"label": "./labelsTr/case_00000.nii.gz"
},
{
"image": "./imagesTr/case_00001.nii.gz",
"label": "./labelsTr/case_00001.nii.gz"
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{
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"label": "./labelsTr/case_00002.nii.gz"
},
{
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"label": "./labelsTr/case_00003.nii.gz"
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{
"image": "./imagesTr/case_00004.nii.gz",
"label": "./labelsTr/case_00004.nii.gz"
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"label": "./labelsTr/case_00005.nii.gz"
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{
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"label": "./labelsTr/case_00016.nii.gz"
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"image": "./imagesTr/case_00017.nii.gz",
"label": "./labelsTr/case_00017.nii.gz"
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{
"image": "./imagesTr/case_00018.nii.gz",
"label": "./labelsTr/case_00018.nii.gz"
},
{
"image": "./imagesTr/case_00019.nii.gz",
"label": "./labelsTr/case_00019.nii.gz"
},
{
"image": "./imagesTr/case_00020.nii.gz",
"label": "./labelsTr/case_00020.nii.gz"
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{
"image": "./imagesTr/case_00021.nii.gz",
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{
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{
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"label": "./labelsTr/case_00023.nii.gz"
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{
"image": "./imagesTr/case_00024.nii.gz",
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{
"image": "./imagesTr/case_00039.nii.gz",
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}
] | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null |
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} | ExperimentPlanner | LabelManager | null | null |
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