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ctheodoris
/
Geneformer
like
194
Fill-Mask
Transformers
Safetensors
ctheodoris/Genecorpus-30M
bert
Inference Endpoints
License:
apache-2.0
Model card
Files
Files and versions
Community
430
Train
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Use this model
refs/pr/267
Geneformer
/
geneformer
13 contributors
History:
52 commits
Christina Theodoris
update cell classifier module
025e1b8
11 months ago
__init__.py
558 Bytes
Add function to extract and plot cell embeddings
about 1 year ago
cell_classifier.py
34.3 kB
update cell classifier module
11 months ago
collator_for_classification.py
29.8 kB
Subclass collator for cell classification
over 1 year ago
emb_extractor.py
19.9 kB
Add option to output embs as tensor
about 1 year ago
gene_classifier.py
31.7 kB
update cell classifier module
11 months ago
gene_median_dictionary.pkl
pickle
Detected Pickle imports (2)
"numpy.dtype"
,
"numpy.core.multiarray.scalar"
How to fix it?
941 kB
Add Geneformer tokenizer and updated model card
about 2 years ago
gene_name_id_dict.pkl
pickle
1.12 MB
LFS
Upload gene_name_id_dict.pkl (#14)
over 1 year ago
in_silico_perturber.py
65.9 kB
Add option to output embs as tensor
about 1 year ago
in_silico_perturber_stats.py
34.8 kB
Add option to output embs as tensor
about 1 year ago
modular_classifier_usage.md
4.92 kB
update cell classifier module
11 months ago
pretrainer.py
37 kB
Update pretrainer for transformers==4.28.0
over 1 year ago
token_dictionary.pkl
pickle
Detected Pickle imports (2)
"numpy.dtype"
,
"numpy.core.multiarray.scalar"
How to fix it?
788 kB
Update token_dictionary.pkl
over 1 year ago
tokenizer.py
12.8 kB
anndata_tokenizer (#170)
about 1 year ago