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Geneformer

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16 contributors

History: 90 commits

ctheodoris's picture

davidjwen's picture

Upload in_silico_perturber.py (#187)

8180caa almost 2 years ago

examples
Fixed error with perturbing individual genes and updated ways to specify cell_states_to_model (#146) almost 2 years ago
fine_tuned_models
Add fine-tuned CellClassifier for cardiomyopathy almost 2 years ago
geneformer-12L-30M
Upload 12 layer Geneformer model almost 2 years ago
geneformer
Upload in_silico_perturber.py (#187) almost 2 years ago
.gitattributes

1.24 kB

Add gene name : Ensembl ID dictionary almost 2 years ago
.gitignore

3.08 kB

Add gitignore file almost 2 years ago
MANIFEST.in

127 Bytes

Fixes to stats and adding gene dict attempt number 2 (#13) almost 2 years ago
README.md

6.19 kB

Update README.md almost 2 years ago
config.json

565 Bytes

upload Geneformer 6L-30M config about 3 years ago
pytorch_model.bin
Detected Pickle imports (4)
- "torch._utils._rebuild_tensor_v2",
- "torch.FloatStorage",
- "torch.LongStorage",
- "collections.OrderedDict"
What is a pickle import?
41.2 MB
LFS

upload Geneformer 6L-30M about 3 years ago
setup.py

637 Bytes

Add setup.py over 2 years ago
training_args.bin
Detected Pickle imports (4)
- "transformers.trainer_utils.IntervalStrategy",
- "transformers.trainer_utils.SchedulerType",
- "transformers.training_args.TrainingArguments",
- "torch.device"
How to fix it?
2.61 kB
LFS

upload training args for Geneformer 6L-30M about 3 years ago