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bc2gm_corpus-Bio_ClinicalBERT-finetuned-ner

This model is a fine-tuned version of emilyalsentzer/Bio_ClinicalBERT on the bc2gm_corpus dataset. It achieves the following results on the evaluation set:

  • Loss: 0.1505
  • Precision: 0.7854
  • Recall: 0.8158
  • F1: 0.8003
  • Accuracy: 0.9759

Model description

More information needed

Intended uses & limitations

More information needed

Training and evaluation data

More information needed

Training procedure

Training hyperparameters

The following hyperparameters were used during training:

  • learning_rate: 2e-05
  • train_batch_size: 16
  • eval_batch_size: 16
  • seed: 42
  • optimizer: Adam with betas=(0.9,0.999) and epsilon=1e-08
  • lr_scheduler_type: linear
  • num_epochs: 10

Training results

Training Loss Epoch Step Validation Loss Precision Recall F1 Accuracy
0.0981 1.0 782 0.0712 0.7228 0.7948 0.7571 0.9724
0.0509 2.0 1564 0.0687 0.7472 0.8199 0.7818 0.9746
0.0121 3.0 2346 0.0740 0.7725 0.8011 0.7866 0.9747
0.0001 4.0 3128 0.1009 0.7618 0.8251 0.7922 0.9741
0.0042 5.0 3910 0.1106 0.7757 0.8185 0.7965 0.9754
0.0015 6.0 4692 0.1182 0.7812 0.8111 0.7958 0.9758
0.0001 7.0 5474 0.1283 0.7693 0.8275 0.7973 0.9753
0.0072 8.0 6256 0.1376 0.7863 0.8158 0.8008 0.9762
0.0045 9.0 7038 0.1468 0.7856 0.8180 0.8015 0.9761
0.0 10.0 7820 0.1505 0.7854 0.8158 0.8003 0.9759

Framework versions

  • Transformers 4.20.1
  • Pytorch 1.12.0+cu113
  • Datasets 2.3.2
  • Tokenizers 0.12.1
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Dataset used to train commanderstrife/bc2gm_corpus-Bio_ClinicalBERT-finetuned-ner

Evaluation results