sentence-transformers How to use amin/medical_embedding_1 with sentence-transformers:
from sentence_transformers import SentenceTransformer
model = SentenceTransformer("amin/medical_embedding_1")
sentences = [
"What are the symptoms of Anomalies?",
"13 weeks menstrual age, there are three ossification centers in vertebrae C1 through L314 (Fig. 35.2). Neural arch ossification begins as a small focus at the base of the transverse process and extends simultaneously into the pedicle anteriorly and into the lamina posteriorly (Fig. 35.3). Ultrasound evaluation for spina bifida usually occurs between 16 and 22 weeks gestation. By 16 weeks, there is enough ossifica- tion in the neural arches to assess for spina bifida to level L5,15 by 19 weeks to level S1, and by 22 weeks to level S2 (Figs. 35.4 and 35.5). In some fetuses, there may be enough neural arch ossification to assess for spina bifida before these gestational ages. Braithwaite et al.16 assessed the fetal anatomy at 12 to 13 weeks gestation by a combination of transabdominal and transvaginal sonography and reported successful examination of the vertebrae and overlying skin in both the transverse and the coronal plane in all cases. Others have reported successful prenatal diagnosis of spina bifida at 12 to 14 weeks gestation on the basis of abnormal cranial findings.17-19 They caution that although the characteristic cranial findings may be present at 11 to 14 weeks, the prevalence of these findings in the first trimester remains to be determined (Table 35.2). Furthermore, closed NTDs are less likely to be associated with abnormal cranial findings and therefore are more difficult to detect in the first trimester. Normal Position of the Spinal Cord For fetuses at 19 to 33 weeks gestation, the conus medullaris is normally situated at level L2-L3 or higher (Fig. 35.6). Level L3 is taken to be indeterminate and L3-L4 or lower as abnormal.20 For those fetuses with tethered cord, the position of the conus CHAPTER 35 The Fetal Spine 1219 FIG. 35.2 Spine Ossification at 11 Weeks + 4 Days",
"Dorsiflexion of foot at ankle joint; inversion of foot; dynamic support of medial arch of foot Extensor hallucis longus Middle one-half of medial surface of fibula and adjacent surface of interosseous membrane Dorsal surface of base of distal phalanx of great toe Deep fibular nerve (L5, S1) Extension of great toe and dorsiflexion of foot Extensor digitorum longus Proximal one-half of medial surface of fibula and related surface of lateral tibial condyle Bases of distal and middle phalanges of lateral four toes Deep fibular nerve (L5, S1) Extension of lateral four toes and dorsiflexion of foot Fibularis tertius Distal part of medial surface of fibula Dorsomedial surface of base of metatarsal 5 Deep fibular nerve (L5, S1) Dorsiflexion and eversion of foot Modified from Drake, RL, Grays Anatomy for Students, 3rd ed, 2015, Churchill Livingstone, Elsevier. 7 137 Surface anatomy the soleus and the plantaris muscles (Fig. 7.14 and Table 7.6). These superficial muscles plantarflex the foot at the ankle joint. The gastrocnemius muscle is the most superficial muscle of the posterior calf and has two heads, the medial and lateral. Standing on tip toes makes the two heads of gastrocnemius more prominent and palpable. Distally, they converge to form the calcaneal tendon, or Achilles tendon, which can be observed toward its attachment on the calcaneus. The soleus muscle lies deep to the gas- trocnemius and also inserts into the calcaneal tendon. The soleus muscle can be palpated either side of the calcaneal tendon. The plantaris muscle is a small vestigial muscle with a long tendinous portion that passes between the soleus muscle and the gastrocnemius muscle. It cannot be palpated. The deep group of posterior compartment consists of the popliteus, flexor hallucis longus, flexor digitorum longus and tibialis posterior muscles (Table 7.6). Although these muscles are not palpable, their",
"recessive polycystic kidneys, autosomal dominant polycystic kidneys, Jeune asphyxiating thoracic dystrophy, Ellis-van Creveld syndrome, and others.115 Joubert Syndrome Joubert syndrome and related disorders (JSRD) have the key feature of molar tooth sign visible on MRI. The molar tooth appearance results from hypoplasia of the cerebellar vermis, horizontal thick elongated cerebral peduncles, and deep inter- peduncular fossa at upper pons; on axial MRI of the brainstem, these features look like a molar tooth. This sign is used as the diagnostic test in children. JSRD is clinically characterized by hypotonia, ataxia, psychomotor delay, irregular breathing, and abnormal eye movements and has an incidence of about 1 per 80,000 pregnancies. Different combinations of ciliary gene muta- tions can result in primary Joubert syndrome, and related disorders have variable abnormalities of the neurons, eye, renal tubules, and bile ducts and polydactyly.116 On ultrasound the molar tooth sign findings of vermian hypoplasia, thickened cerebral peduncles, and interpeduncular notch may be visible by 20 weeks and confirmed by MRI if needed.117 Additional cerebral imaging findings can include abnormalities of the corpus callosum and neuronal migrational abnormalities, Dandy-Walker malformation (DWM), and encephalocele as well as abnormalities in somatic structures. If the mutation is known (about 50%), early diagnosis is possible with chorionic villus sampling (CVS). Prognosis is generally poor and related to extent of breathing and feeding problems in the short term and renal and hepatic complications in the long term. Meckel-Gruber Syndrome Meckel-Gruber syndrome is likely the most common syndromic abnormality of the CNS and is characterized by occipital encephalocele, enlarged dysplastic kidneys, hepatic duct prolifera- tion, polydactyly, posterior fossa abnormalities, and craniofacial and heart defects and has features that overlap with JSRS. Incidence is 1 per 13,000 to 140,000 live births. It is a lethal autosomal recessive disorder associated with mutations in several ciliary genes."
]
embeddings = model.encode(sentences)
similarities = model.similarity(embeddings, embeddings)
print(similarities.shape)
# [4, 4] 
