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---
language: en
tags:
- token-classification
- NER
- Biomedical
- Chemicals
datasets:
- BC5CDR-chemicals
- BC4CHEMD
license: apache-2.0
---
# Model Card for biobert Chemical NER
# Model Details
## Model Description
BioBERT model fine-tuned in NER task with BC5CDR-chemicals and BC4CHEMD corpus.
- **Developed by:** librAIry
- **Shared by [Optional]:** Alvaro A
- **Model type:** Token Classification
- **Language(s) (NLP):** More information needed
- **License:** Apache 2.0
- **Parent Model:** NER
- **Resources for more information:**
- [GitHub Repo](https://github.com/librairy/bio-ner)
- [Associated Paper](https://oa.upm.es/67933/)
# Uses
## Direct Use
This model can be used for the task of model is lost/undocumented.
It was fine-tuned in order to use it in a BioNER/BioNEN system which is available at the [GitHub Repo](https://github.com/librairy/bio-ner)
## Downstream Use [Optional]
More information needed.
## Out-of-Scope Use
The model should not be used to intentionally create hostile or alienating environments for people.
# Bias, Risks, and Limitations
Significant research has explored bias and fairness issues with language models (see, e.g., [Sheng et al. (2021)](https://aclanthology.org/2021.acl-long.330.pdf) and [Bender et al. (2021)](https://dl.acm.org/doi/pdf/10.1145/3442188.3445922)). Predictions generated by the model may include disturbing and harmful stereotypes across protected classes; identity characteristics; and sensitive, social, and occupational groups.
## Recommendations
Users (both direct and downstream) should be made aware of the risks, biases and limitations of the model. More information needed for further recommendations.
# Training Details
## Training Data
More information needed
## Training Procedure
### Preprocessing
More information needed
### Speeds, Sizes, Times
More information needed
# Evaluation
## Testing Data, Factors & Metrics
### Testing Data
More information needed
### Factors
More information needed
### Metrics
More information needed
## Results
More information needed
# Model Examination
More information needed
# Environmental Impact
Carbon emissions can be estimated using the [Machine Learning Impact calculator](https://mlco2.github.io/impact#compute) presented in [Lacoste et al. (2019)](https://arxiv.org/abs/1910.09700).
- **Hardware Type:** More information needed
- **Fine-tuning process**: was done in Google Collab using a TPU.
- **Hours used:** More information needed
- **Cloud Provider:** More information needed
- **Compute Region:** More information needed
- **Carbon Emitted:** More information needed
# Technical Specifications [optional]
## Model Architecture and Objective
More information needed
## Compute Infrastructure
More information needed
### Hardware
More information needed
### Software
More information needed.
# Citation
**BibTeX:**
More information needed.
# Glossary [optional]
More information needed
# More Information [optional]
More information needed
# Model Card Authors [optional]
Alvaro A in collaboration with Ezi Ozoani and the Hugging Face team
# Model Card Contact
More information needed
# How to Get Started with the Model
Use the code below to get started with the model.
<details>
<summary> Click to expand </summary>
```python
from transformers import AutoTokenizer, AutoModelForTokenClassification
tokenizer = AutoTokenizer.from_pretrained("alvaroalon2/biobert_chemical_ner")
model = AutoModelForTokenClassification.from_pretrained("alvaroalon2/biobert_chemical_ner")
```
</details> |