CodonTransformer

CodonTransformer is a state-of-the-art model designed to predict optimized DNA sequences for given protein sequences and organisms. It achieves state-of-the-art performance compared to existing models in the field. More information will be provided soon.

https://github.com/Adibvafa/CodonTransformer

How to Get Started with the Model

Use the code below to get started with CodonTransformer:

# Load model and tokenizer
from transformers import AutoTokenizer, BigBirdForMaskedLM

tokenizer = AutoTokenizer.from_pretrained("adibvafa/CodonTransformer")
model = BigBirdForMaskedLM.from_pretrained("adibvafa/CodonTransformer")

You can use CodonTransformer at Google Colab: https://adibvafa.github.io/CodonTransformer/GoogleColab

You can view the same notebook in the GitHub repo: https://github.com/Adibvafa/CodonTransformer/blob/main/CodonTransformerDemo.ipynb