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license: apache-2.0 |
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tags: |
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- medical |
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datasets: |
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- biomed |
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--- |
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# BioMedGPT-LM-7B |
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In this repo, we present a medical language model named BioMedGPT-LM which is the first commercial-friendly GPT model in the biomedical domain and has demonstrated |
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superior performance over existing LLMs of the same parameter size. We are releasing a 7B model **BioMedGPT-LM-7B** which is LLaMA2-7b-chat finetuned on the PMC abstracts and papers from the S2ORC. |
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### Training Details |
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The model was trained with the following hyperparameters: |
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* Epochs: 5 |
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* Batch size: 192 |
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* Cutoff length: 2048 |
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* Learning rate: 2e-5 |
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Overview BioMedGPT-LM-7B was finetuned on over 26 billion tokens highly pertinent to the field of biomedicine. The fine-tuning data are extracted from 5.5 million biomedical papers in S2ORC data using PubMed Central |
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(PMC)-ID and PubMed ID as criteria. |
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### Model Developers |
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PharMolix |
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### How to Use |
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BioMedGPT-LM-7B is a part of **[BioMedGPT-10B](https://github.com/BioFM/OpenBioMed)**, an open-source version of BioMedGPT. BioMedGPT is a multimodal generative pre-trained transformer (GPT) for biomedicine, which bridges the natural language modality and diverse biomed- |
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ical data modalities via a single GPT model. BioMedGPT aligns different biological modalities with the text modality via BioMedGPT-LM. The details of BioMedGPT-10B and BioMedGPT-LM-7B can be found in the [technical report](). |
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**Intended Use Cases** |
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| **Method** | Parameters (B) | Setting | MedMCQA(\%) | PubMedQA(\%) | |
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|------------------------|----------------|-----------|-------------|--------------| |
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| Human (pass)* | - | Manual | - | 60.0 | |
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| Human (expert)* | - | Manual | 90 | 78.0 | |
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|------------------------|----------------|-----------|-------------|--------------| |
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| InstructGPT* | 175 | zero-shot | 44.0 | 73.2 | |
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| ChatGPT* | - | zero-shot | 44.7 | 63.9 | |
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| Llama* | 7 | zero-shot | 24.3 | 5.2 | |
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| Llama2 | 7 | zero-shot | 30.6 | 3.7 | |
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| Llama2-Chat | 7 | zero-shot | 35.5 | 21.9 | |
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|------------------------|----------------| --------- |-------------|--------------| |
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| Llama | 7 |Fine-tuing | 48.2 | 73.4 | |
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| Llama2-Chat | 7 |Fine-tuing | 48.3 | 75.5 | |
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| PMC-Llama | 7 |Fine-tuing | 50.5 | 69.5 | |
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|------------------------|----------------|-----------|-------------|--------------| |
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| **BioMedGPT-LM-7B** | 7 |Fine-tuing | **51.4** | **76.1** | |
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**Out-of-scope Uses** |
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### Technical Report |
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"BioMedGPT: Open Multimodal Generative Pre-trained Transformer for BioMedicine" |
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### github |
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[https://github.com/BioFM/OpenBioMed](https://github.com/BioFM/OpenBioMed) |
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### Limitations |
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[Highlight any limitations or potential issues of your model.] |
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