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method=scGPT
echo '++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++'
echo '+++++ Integration_accuracy real: '$method' +++++'
echo '++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++'
for data_name in 10x-Multiome-Pbmc10k
do
echo "Evaluation with $data_name"
python integration_accuracy.py \
-d ../../data/download/$data_name/$data_name-small-RNA_uni.h5ad ../../data/download/$data_name/$data_name-small-ATAC_uni.h5ad \
-l ../../results/$method-output/$data_name/$data_name-small-rna.csv ../../results/$method-output/$data_name/$data_name-small-atac.csv \
-o ../../results/$method-output/$data_name/$data_name-cell_integration_info.yaml
echo "=================="
done
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