File size: 17,047 Bytes
a43ef32
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
"""

 Copyright (c) 2023, salesforce.com, inc.

 All rights reserved.

 SPDX-License-Identifier: BSD-3-Clause

 For full license text, see the LICENSE file in the repo root or https://opensource.org/licenses/BSD-3-Clause

"""
import contextlib
import logging
import os
import time
import datetime

import torch
import torch.nn as nn
import torch.distributed as dist
import torch.nn.functional as F

import lavis.common.dist_utils as dist_utils
from lavis.common.dist_utils import download_cached_file
from lavis.common.utils import is_url
from lavis.common.logger import MetricLogger
from lavis.models.base_model import BaseModel
from lavis.models.blip2_models.Qformer import BertConfig, BertLMHeadModel
from lavis.models.eva_vit import create_eva_vit_g
from lavis.models.clip_vit import create_clip_vit_L
from transformers import BertTokenizer


class Blip2Base(BaseModel):
    @classmethod
    def init_tokenizer(cls, truncation_side="right"):
        tokenizer = BertTokenizer.from_pretrained("bert-base-uncased", truncation_side=truncation_side)
        tokenizer.add_special_tokens({"bos_token": "[DEC]"})
        return tokenizer

    def maybe_autocast(self, dtype=torch.float16):
        # if on cpu, don't use autocast
        # if on gpu, use autocast with dtype if provided, otherwise use torch.float16
        enable_autocast = self.device != torch.device("cpu")

        if enable_autocast:
            return torch.cuda.amp.autocast(dtype=dtype)
        else:
            return contextlib.nullcontext()

    @classmethod
    def init_Qformer(cls, num_query_token, vision_width, cross_attention_freq=2):
        encoder_config = BertConfig.from_pretrained("bert-base-uncased")
        encoder_config.encoder_width = vision_width
        # insert cross-attention layer every other block
        encoder_config.add_cross_attention = True
        encoder_config.cross_attention_freq = cross_attention_freq
        encoder_config.query_length = num_query_token
        Qformer = BertLMHeadModel.from_pretrained(
            "bert-base-uncased", config=encoder_config
        )
        query_tokens = nn.Parameter(
            torch.zeros(1, num_query_token, encoder_config.hidden_size)
        )
        query_tokens.data.normal_(mean=0.0, std=encoder_config.initializer_range)
        return Qformer, query_tokens

    def init_vision_encoder(

        self, model_name, img_size, drop_path_rate, use_grad_checkpoint, precision

    ):
        assert model_name in [
            "eva_clip_g",
            "eva2_clip_L",
            "clip_L",
        ], "vit model must be eva_clip_g, eva2_clip_L or clip_L"
        if model_name == "eva_clip_g":
            visual_encoder = create_eva_vit_g(
                img_size, drop_path_rate, use_grad_checkpoint, precision
            )
#         elif model_name == "eva2_clip_L":
#             visual_encoder = create_eva2_vit_L(
#                 img_size, drop_path_rate, use_grad_checkpoint, precision
#             )
        elif model_name == "clip_L":
            visual_encoder = create_clip_vit_L(img_size, use_grad_checkpoint, precision)
        ln_vision = LayerNorm(visual_encoder.num_features)
        self.vit_name = model_name
        return visual_encoder, ln_vision

    def load_from_pretrained(self, url_or_filename):
        if is_url(url_or_filename):
            cached_file = download_cached_file(
                url_or_filename, check_hash=False, progress=True
            )
            checkpoint = torch.load(cached_file, map_location="cpu")
        elif os.path.isfile(url_or_filename):
            checkpoint = torch.load(url_or_filename, map_location="cpu")
        else:
            raise RuntimeError("checkpoint url or path is invalid")

        state_dict = checkpoint["model"]

        msg = self.load_state_dict(state_dict, strict=False)

        # logging.info("Missing keys {}".format(msg.missing_keys))
        logging.info("load checkpoint from %s" % url_or_filename)

        return msg

    def get_optimizer_params(self, weight_decay, lr_scale=1):

        vit_num_layers = self.visual_encoder.get_num_layer()
        lr_scales = list(lr_scale ** (vit_num_layers + 1 - i) for i in range(vit_num_layers + 2))

        parameter_group_names = {}
        parameter_group_vars = {}

        for name, param in self.named_parameters():
            if not param.requires_grad:
                continue  # frozen weights
            if len(param.shape) == 1 or name.endswith(".bias"):
                group_name = "no_decay"
                this_weight_decay = 0.
            else:
                group_name = "decay"
                this_weight_decay = weight_decay
            if 'visual_encoder' in name:
                layer_id = self.visual_encoder.get_num_layer(name.replace('visual_encoder.',''))
                group_name = "vit_layer_%d_%s" % (layer_id, group_name)
            else:
                layer_id = None

            if group_name not in parameter_group_names:
                if layer_id is not None:
                    scale = lr_scales[layer_id]
                else:
                    scale = 1
                parameter_group_names[group_name] = {
                    "weight_decay": this_weight_decay,
                    "params": [],
                    "lr_scale": scale
                }
                parameter_group_vars[group_name] = {
                    "weight_decay": this_weight_decay,
                    "params": [],
                    "lr_scale": scale
                }
            parameter_group_vars[group_name]["params"].append(param)
            parameter_group_names[group_name]["params"].append(name)
        # import json
        # print("Param groups = %s" % json.dumps(parameter_group_names, indent=2))
        optim_params = list(parameter_group_vars.values())
        return optim_params

    def _lemmatize(self, answers):
        def apply(answer):
            doc = self.lemmatizer(answer)

            words = []
            for token in doc:
                if token.pos_ in ["NOUN", "VERB"]:
                    words.append(token.lemma_)
                else:
                    words.append(token.text)
            answer = " ".join(words)

            return answer

        return [apply(answer) for answer in answers]

    @property
    def lemmatizer(self):
        if self._lemmatizer is None:
            try:
                import spacy

                self._lemmatizer = spacy.load("en_core_web_sm")
            except ImportError:
                logging.error(
                    """

                    Please install spacy and en_core_web_sm model to apply lemmatization.

                    python -m spacy download en_core_web_sm

                    OR

                    import spacy.cli

                    spacy.cli.download("en_core_web_sm")

                    """
                )
                exit(1)

        return self._lemmatizer


class Blip2ProteinBase(BaseModel):
    @classmethod
    def init_tokenizer(cls, truncation_side="right"):
        tokenizer = BertTokenizer.from_pretrained("bert-base-uncased", truncation_side=truncation_side)
        tokenizer.add_special_tokens({"bos_token": "[DEC]"})
        return tokenizer

    def maybe_autocast(self, dtype=torch.float16):
        # if on cpu, don't use autocast
        # if on gpu, use autocast with dtype if provided, otherwise use torch.float16
        enable_autocast = self.device != torch.device("cpu")

        if enable_autocast:
            return torch.cuda.amp.autocast(dtype=dtype)
        else:
            return contextlib.nullcontext()

    @classmethod
    def init_Qformer(cls, num_query_token, vision_width, cross_attention_freq=2):
        encoder_config = BertConfig.from_pretrained("bert-base-uncased")
        encoder_config.encoder_width = vision_width
        # insert cross-attention layer every other block
        encoder_config.add_cross_attention = True
        encoder_config.cross_attention_freq = cross_attention_freq
        encoder_config.query_length = num_query_token
        Qformer = BertLMHeadModel.from_pretrained("bert-base-uncased", config=encoder_config)
        query_tokens = nn.Parameter(
            torch.zeros(1, num_query_token, encoder_config.hidden_size)
        )
        query_tokens.data.normal_(mean=0.0, std=encoder_config.initializer_range)
        return Qformer, query_tokens

    def load_from_pretrained(self, url_or_filename):
        if is_url(url_or_filename):
            cached_file = download_cached_file(
                url_or_filename, check_hash=False, progress=True
            )
            checkpoint = torch.load(cached_file, map_location="cpu")
        elif os.path.isfile(url_or_filename):
            checkpoint = torch.load(url_or_filename, map_location="cpu")
        else:
            raise RuntimeError("checkpoint url or path is invalid")

        state_dict = checkpoint["model"]

        msg = self.load_state_dict(state_dict, strict=False)

        # logging.info("Missing keys {}".format(msg.missing_keys))
        logging.info("load checkpoint from %s" % url_or_filename)

        return msg

    def get_optimizer_params(self, weight_decay, lr_scale=1):
        try:
            vit_num_layers = self.ln_vision.num_layers
        except:
            print('Use pre computing embedding instead of ln_vision model')
            vit_num_layers = 33
        lr_scales = list(lr_scale ** (vit_num_layers + 1 - i) for i in range(vit_num_layers + 2))

        parameter_group_names = {}
        parameter_group_vars = {}

        for name, param in self.named_parameters():
            if not param.requires_grad:
                continue  # frozen weights
            if len(param.shape) == 1 or name.endswith(".bias"):
                group_name = "no_decay"
                this_weight_decay = 0.
            else:
                group_name = "decay"
                this_weight_decay = weight_decay
            # if 'visual_encoder' in name:
            #     layer_id = self.visual_encoder.get_num_layer(name.replace('visual_encoder.',''))
            #     group_name = "vit_layer_%d_%s" % (layer_id, group_name)
            # else:
            #     layer_id = None

            if group_name not in parameter_group_names:
                # if layer_id is not None:
                #     scale = lr_scales[layer_id]
                # else:
                #     scale = 1
                scale = 1

                parameter_group_names[group_name] = {
                    "weight_decay": this_weight_decay,
                    "params": [],
                    "lr_scale": scale
                }
                parameter_group_vars[group_name] = {
                    "weight_decay": this_weight_decay,
                    "params": [],
                    "lr_scale": scale
                }
            parameter_group_vars[group_name]["params"].append(param)
            parameter_group_names[group_name]["params"].append(name)
        # import json
        # print("Param groups = %s" % json.dumps(parameter_group_names, indent=2))
        optim_params = list(parameter_group_vars.values())
        return optim_params

    def _lemmatize(self, answers):
        def apply(answer):
            doc = self.lemmatizer(answer)

            words = []
            for token in doc:
                if token.pos_ in ["NOUN", "VERB"]:
                    words.append(token.lemma_)
                else:
                    words.append(token.text)
            answer = " ".join(words)

            return answer

        return [apply(answer) for answer in answers]

    @property
    def lemmatizer(self):
        if self._lemmatizer is None:
            try:
                import spacy

                self._lemmatizer = spacy.load("en_core_web_sm")
            except ImportError:
                logging.error(
                    """

                    Please install spacy and en_core_web_sm model to apply lemmatization.

                    python -m spacy download en_core_web_sm

                    OR

                    import spacy.cli

                    spacy.cli.download("en_core_web_sm")

                    """
                )
                exit(1)

        return self._lemmatizer


def disabled_train(self, mode=True):
    """Overwrite model.train with this function to make sure train/eval mode

    does not change anymore."""
    return self


class LayerNorm(nn.LayerNorm):
    """Subclass torch's LayerNorm to handle fp16."""

    def forward(self, x: torch.Tensor):
        orig_type = x.dtype
        ret = super().forward(x.type(torch.float32))
        return ret.type(orig_type)


def compute_sim_matrix(model, data_loader, **kwargs):
    k_test = kwargs.pop("k_test")

    metric_logger = MetricLogger(delimiter="  ")
    header = "Evaluation:"

    logging.info("Computing features for evaluation...")
    start_time = time.time()

    texts = data_loader.dataset.text
    num_text = len(texts)
    text_bs = 256
    text_ids = []
    text_embeds = []
    text_atts = []
    for i in range(0, num_text, text_bs):
        text = texts[i : min(num_text, i + text_bs)]
        text_input = model.tokenizer(
            text,
            padding="max_length",
            truncation=True,
            max_length=35,
            return_tensors="pt",
        ).to(model.device)
        text_feat = model.forward_text(text_input)
        text_embed = F.normalize(model.text_proj(text_feat))
        text_embeds.append(text_embed)
        text_ids.append(text_input.input_ids)
        text_atts.append(text_input.attention_mask)

    text_embeds = torch.cat(text_embeds, dim=0)
    text_ids = torch.cat(text_ids, dim=0)
    text_atts = torch.cat(text_atts, dim=0)

    vit_feats = []
    image_embeds = []
    for samples in data_loader:
        image = samples["image"]

        image = image.to(model.device)
        image_feat, vit_feat = model.forward_image(image)
        image_embed = model.vision_proj(image_feat)
        image_embed = F.normalize(image_embed, dim=-1)

        vit_feats.append(vit_feat.cpu())
        image_embeds.append(image_embed)

    vit_feats = torch.cat(vit_feats, dim=0)
    image_embeds = torch.cat(image_embeds, dim=0)

    sims_matrix = []
    for image_embed in image_embeds:
        sim_q2t = image_embed @ text_embeds.t()
        sim_i2t, _ = sim_q2t.max(0)
        sims_matrix.append(sim_i2t)
    sims_matrix = torch.stack(sims_matrix, dim=0)

    score_matrix_i2t = torch.full(
        (len(data_loader.dataset.image), len(texts)), -100.0
    ).to(model.device)

    num_tasks = dist_utils.get_world_size()
    rank = dist_utils.get_rank()
    step = sims_matrix.size(0) // num_tasks + 1
    start = rank * step
    end = min(sims_matrix.size(0), start + step)

    for i, sims in enumerate(
        metric_logger.log_every(sims_matrix[start:end], 50, header)
    ):
        topk_sim, topk_idx = sims.topk(k=k_test, dim=0)
        image_inputs = vit_feats[start + i].repeat(k_test, 1, 1).to(model.device)
        score = model.compute_itm(
            image_inputs=image_inputs,
            text_ids=text_ids[topk_idx],
            text_atts=text_atts[topk_idx],
        ).float()
        score_matrix_i2t[start + i, topk_idx] = score + topk_sim

    sims_matrix = sims_matrix.t()
    score_matrix_t2i = torch.full(
        (len(texts), len(data_loader.dataset.image)), -100.0
    ).to(model.device)

    step = sims_matrix.size(0) // num_tasks + 1
    start = rank * step
    end = min(sims_matrix.size(0), start + step)

    for i, sims in enumerate(
        metric_logger.log_every(sims_matrix[start:end], 50, header)
    ):
        topk_sim, topk_idx = sims.topk(k=k_test, dim=0)
        image_inputs = vit_feats[topk_idx.cpu()].to(model.device)
        score = model.compute_itm(
            image_inputs=image_inputs,
            text_ids=text_ids[start + i].repeat(k_test, 1),
            text_atts=text_atts[start + i].repeat(k_test, 1),
        ).float()
        score_matrix_t2i[start + i, topk_idx] = score + topk_sim

    if dist_utils.is_dist_avail_and_initialized():
        dist.barrier()
        torch.distributed.all_reduce(
            score_matrix_i2t, op=torch.distributed.ReduceOp.SUM
        )
        torch.distributed.all_reduce(
            score_matrix_t2i, op=torch.distributed.ReduceOp.SUM
        )

    total_time = time.time() - start_time
    total_time_str = str(datetime.timedelta(seconds=int(total_time)))
    logging.info("Evaluation time {}".format(total_time_str))

    return score_matrix_i2t.cpu().numpy(), score_matrix_t2i.cpu().numpy()