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from typing import Dict, List
from lightning.pytorch.callbacks import Callback
from reader.data.relik_reader_sample import RelikReaderSample
from relik.reader.relik_reader_predictor import RelikReaderPredictor
from relik.reader.utils.metrics import f1_measure, safe_divide
from relik.reader.utils.special_symbols import NME_SYMBOL
class StrongMatching:
def __call__(self, predicted_samples: List[RelikReaderSample]) -> Dict:
# accumulators
correct_predictions = 0
correct_predictions_at_k = 0
total_predictions = 0
total_gold = 0
correct_span_predictions = 0
miss_due_to_candidates = 0
# prediction index stats
avg_correct_predicted_index = []
avg_wrong_predicted_index = []
less_index_predictions = []
# collect data from samples
for sample in predicted_samples:
predicted_annotations = sample.predicted_window_labels_chars
predicted_annotations_probabilities = sample.probs_window_labels_chars
gold_annotations = {
(ss, se, entity)
for ss, se, entity in sample.window_labels
if entity != NME_SYMBOL
}
total_predictions += len(predicted_annotations)
total_gold += len(gold_annotations)
# correct named entity detection
predicted_spans = {(s, e) for s, e, _ in predicted_annotations}
gold_spans = {(s, e) for s, e, _ in gold_annotations}
correct_span_predictions += len(predicted_spans.intersection(gold_spans))
# correct entity linking
correct_predictions += len(
predicted_annotations.intersection(gold_annotations)
)
for ss, se, ge in gold_annotations.difference(predicted_annotations):
if ge not in sample.window_candidates:
miss_due_to_candidates += 1
if ge in predicted_annotations_probabilities.get((ss, se), set()):
correct_predictions_at_k += 1
# indices metrics
predicted_spans_index = {
(ss, se): ent for ss, se, ent in predicted_annotations
}
gold_spans_index = {(ss, se): ent for ss, se, ent in gold_annotations}
for pred_span, pred_ent in predicted_spans_index.items():
gold_ent = gold_spans_index.get(pred_span)
if pred_span not in gold_spans_index:
continue
# missing candidate
if gold_ent not in sample.window_candidates:
continue
gold_idx = sample.window_candidates.index(gold_ent)
if gold_idx is None:
continue
pred_idx = sample.window_candidates.index(pred_ent)
if gold_ent != pred_ent:
avg_wrong_predicted_index.append(pred_idx)
if gold_idx is not None:
if pred_idx > gold_idx:
less_index_predictions.append(0)
else:
less_index_predictions.append(1)
else:
avg_correct_predicted_index.append(pred_idx)
# compute NED metrics
span_precision = safe_divide(correct_span_predictions, total_predictions)
span_recall = safe_divide(correct_span_predictions, total_gold)
span_f1 = f1_measure(span_precision, span_recall)
# compute EL metrics
precision = safe_divide(correct_predictions, total_predictions)
recall = safe_divide(correct_predictions, total_gold)
recall_at_k = safe_divide(
(correct_predictions + correct_predictions_at_k), total_gold
)
f1 = f1_measure(precision, recall)
wrong_for_candidates = safe_divide(miss_due_to_candidates, total_gold)
out_dict = {
"span_precision": span_precision,
"span_recall": span_recall,
"span_f1": span_f1,
"core_precision": precision,
"core_recall": recall,
"core_recall-at-k": recall_at_k,
"core_f1": round(f1, 4),
"wrong-for-candidates": wrong_for_candidates,
"index_errors_avg-index": safe_divide(
sum(avg_wrong_predicted_index), len(avg_wrong_predicted_index)
),
"index_correct_avg-index": safe_divide(
sum(avg_correct_predicted_index), len(avg_correct_predicted_index)
),
"index_avg-index": safe_divide(
sum(avg_correct_predicted_index + avg_wrong_predicted_index),
len(avg_correct_predicted_index + avg_wrong_predicted_index),
),
"index_percentage-favoured-smaller-idx": safe_divide(
sum(less_index_predictions), len(less_index_predictions)
),
}
return {k: round(v, 5) for k, v in out_dict.items()}
class ELStrongMatchingCallback(Callback):
def __init__(self, dataset_path: str, dataset_conf) -> None:
super().__init__()
self.dataset_path = dataset_path
self.dataset_conf = dataset_conf
self.strong_matching_metric = StrongMatching()
def on_validation_epoch_start(self, trainer, pl_module) -> None:
relik_reader_predictor = RelikReaderPredictor(pl_module.relik_reader_core_model)
predicted_samples = relik_reader_predictor.predict(
self.dataset_path,
samples=None,
dataset_conf=self.dataset_conf,
)
predicted_samples = list(predicted_samples)
for k, v in self.strong_matching_metric(predicted_samples).items():
pl_module.log(f"val_{k}", v)
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