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Running
File size: 1,368 Bytes
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import sys
import re
import re
f1 = open(sys.argv[1],'r')
f2 = open(sys.argv[2],'r')
ladder_file = open(sys.argv[3],'r')
output = ""
ladder = []
sktfile = [line.rstrip('\n').strip() for line in f1]
tibfile = [line.rstrip('\n').strip() for line in f2]
last_score = 0.5
def clean_num(string):
string = re.sub("[^0-9, ]","",string)
return int(string.split(',')[0])
for line in ladder_file:
if len(line.split(':')) == 3:
skt,tib,score = line.split(':')
if re.search("[0-9]",skt) and re.search("[0-9]",tib):
skt_num = clean_num(skt)
tib_num = clean_num(tib)
score = float(score)
if score > 0.0:
ladder.append([skt_num,tib_num,score])
last_skt = 0
last_tib = 0
for entry in ladder:
output = output + ' +$+ '.join(sktfile[last_skt:entry[0]]) + "\n"
output = output + "# " + ' +!+ '.join(tibfile[last_tib:entry[1]]) + "\n" #+ "\t" + " SCORE: " + str(entry[2]) + "\n"
last_skt = entry[0]
last_tib = entry[1]
output = output + ' / '.join(sktfile[last_skt:-1]) + "\n"
output = output + "# " + ' / '.join(tibfile[last_tib:-1]) + "\n"
short_f1 = re.sub("\.tsv.*","",sys.argv[1])
short_f2 = re.sub(".*/","",sys.argv[2])
short_f2 = re.sub("\.tsv.*","",short_f2)
with open(short_f1 + "_" + short_f2 + ".org", 'w') as file:
file.write(output)
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