File size: 10,306 Bytes
6770b66
34ecf31
 
 
 
6770b66
34ecf31
 
 
6770b66
 
 
 
 
 
 
 
 
b6c56e9
6770b66
 
 
 
 
 
 
 
 
 
34ecf31
7e8dbcd
6770b66
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
b6c56e9
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
6770b66
 
 
7e8dbcd
 
34ecf31
 
 
 
 
 
 
6770b66
 
34ecf31
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
3eba508
 
 
 
 
 
 
 
34ecf31
3eba508
 
34ecf31
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
6770b66
 
34ecf31
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
6770b66
34ecf31
 
6770b66
 
 
34ecf31
 
 
 
6770b66
34ecf31
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
6770b66
 
34ecf31
 
 
 
 
 
 
 
 
 
 
 
7e8dbcd
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
from fasthtml.common import *
from fasthtml.components import *
from plotly import graph_objects as go
from fh_plotly import plotly2fasthtml
import pandas as pd
import json
from data_viewer import view_data, gen_random_id
from rich import print
import uuid


data_sources = [
    "Freelaw",
    "Wikipedia",
    "PhilPapers",
    "Arxiv",
    "S2ORC",
    "S2ORC Abstract",
    "Pubmed",
    "USPTO",
    "Hackernews",
    "Ubuntu IRC",
    "StackExchange",
    "DM Maths",
    "PG19",
    "Europarl",
]


def get_data(data_source: str = "Freelaw", doc_id: int = 3, target: str = "foo"):
    doc_id = max(0, min(int(doc_id), 9))

    if data_source == "Freelaw":
        raw_sample_doc = json.load(open("data/curated_samples/freelaw_raw.json"))
        extracted_sample_doc = json.load(
            open("data/curated_samples/freelaw_extract.json")
        )
    elif data_source == "Wikipedia":
        raw_sample_doc = extracted_sample_doc = json.load(
            open("data/curated_samples/wiki.json")
        )
    elif data_source == "StackExchange":
        raw_sample_doc = json.load(open("data/curated_samples/stackexchange_raw.json"))
        extracted_sample_doc = json.load(
            open("data/curated_samples/stackexchange_extract.json")
        )
    elif data_source == "PhilPapers":
        raw_sample_doc = extracted_sample_doc = json.load(
            open("data/curated_samples/philpapers_raw.json")
        )
    elif data_source == "Arxiv":
        raw_sample_doc = json.load(open("data/curated_samples/arxiv_raw.json"))
        extracted_sample_doc = json.load(
            open("data/curated_samples/arxiv_extract.json")
        )
    elif data_source == "S2ORC":
        raw_sample_doc = extracted_sample_doc = json.load(
            open("data/curated_samples/s2orc_raw.json")
        )
    elif data_source == "S2ORC Abstract":
        raw_sample_doc = extracted_sample_doc = json.load(
            open("data/curated_samples/s2orc_abstract_raw.json")
        )
    elif data_source == "Pubmed":
        raw_sample_doc = json.load(open("data/curated_samples/pubmed_raw.json"))
        extracted_sample_doc = json.load(
            open("data/curated_samples/pubmed_extract.json")
        )
    elif data_source == "DM Maths":
        raw_sample_doc = json.load(open("data/curated_samples/dm_maths_raw.json"))
        extracted_sample_doc = json.load(
            open("data/curated_samples/dm_maths_extract.json")
        )
    elif data_source == "PG19":
        raw_sample_doc = extracted_sample_doc = json.load(
            open("data/curated_samples/pg19_raw.json")
        )
    elif data_source == "Europarl":
        raw_sample_doc = extracted_sample_doc = json.load(
            open("data/curated_samples/europarl_raw.json")
        )
    else:
        raw_sample_doc = extracted_sample_doc = [{} for _ in range(10)]

    raw_json = raw_sample_doc[doc_id]
    extracted_json = extracted_sample_doc[doc_id]
    return view_data(
        raw_json,
        extracted_json,
        doc_id=doc_id,
        data_source=data_source,
        data_sources=data_sources,
        target=target,
    )


def get_chart_28168342():
    fig = go.Figure()
    filter_names = [
        "Download",
        "Language",
        "Min word count",
        "Title Abstract",
        "Majority language",
        "Paragraph count",
        "Frequency",
        "Unigram log probability",
        "Local dedup",
    ]

    data_sources = [
        ("Wikipedia", [100, 90, 80, 70, 60, 50, 40, 30, 20]),
        ("Freelaw", [100, 90, 80, 70, 60, 50, 40, 20, 20]),
        ("DM Maths", [100, 90, 80, 70, 60, 40, 40, 30, 20]),
        ("USPTO", [100, 90, 80, 70, 60, 40, 40, 30, 20]),
        ("PG19", [100, 90, 80, 70, 60, 40, 40, 30, 20]),
        ("Hackernews", [100, 90, 80, 70, 60, 40, 40, 30, 20]),
        ("Ubuntu IRC", [100, 90, 80, 70, 60, 40, 40, 30, 20]),
        ("Europarl", [100, 90, 80, 70, 60, 40, 40, 30, 20]),
        ("StackExchange", [100, 90, 80, 70, 60, 40, 40, 30, 20]),
        ("Arxiv", [100, 90, 80, 70, 60, 40, 40, 30, 20]),
        ("S2ORC", [100, 90, 80, 70, 60, 40, 40, 30, 20]),
        ("S2ORC Abstract", [100, 90, 80, 70, 60, 40, 40, 30, 20]),
        ("PubMed Central", [100, 90, 80, 70, 60, 40, 40, 30, 20]),
        ("PubMed Central Abstract", [100, 90, 80, 70, 60, 40, 40, 30, 20]),
        ("PhilPapers", [100, 90, 80, 70, 60, 40, 40, 30, 20]),
    ]

    for name, x_values in data_sources:
        fig.add_trace(
            go.Funnel(
                name=name,
                orientation="h",
                y=filter_names,
                x=x_values,
                textinfo="value+percent total",
                textposition="inside",
            )
        )

    fig.update_layout(height=500, plot_bgcolor="rgba(0,0,0,0)")
    return fig


def update(target: str, request):
    params = request.query_params
    if data_source := params.get(f"data_source_{target}"):
        return get_data(
            data_source, params.get(f"doc_id_{target}", 3), target)
    if doc_id := params.get(f"doc_id_{target}"):
        return get_data(
            params.get(f"data_source_{target}"), doc_id, target)


def curated(request):
    data_preparation_steps = pd.DataFrame(
        {
            "Method": [
                "HTTP/FTP dumps",
                "Web crawling",
                "Archive snapshot",
                "Generated",
                "Curated",
            ],
            "Description": [
                "Acquiring data from HTTP/FTP dumps",
                "Crawling websites to extract data",
                "Working with archive dumps",
                "Generating synthetic data",
                "High quality curated data",
            ],
            "Source": [
                "Freelaw | Wikipedia | PhilPapers | Arxiv | S2ORC | Pubmeds",
                "USPTO | Hackernews | Ubuntu IRC",
                "StackExchange",
                "DM Maths",
                "PG19 | Europarl",
            ],
        }
    )

    table_html = data_preparation_steps.to_html(index=False, border=0)
    table_div = Div(NotStr(table_html), style="margin: 40px;")

    text = P("""This initial stage serves as the foundation for the entire
    process. Here, we focus on acquiring and extracting the raw data, which can
    come from various sources such as crawling websites, using HTTP/FTP dumps,
    or working with archive dumps.  For instance, to download and prepare a
    dataset, we can specific downloaders based on the data source. Each dataset
    might have its own downloader script which can be updated in real time to
    handle changes in the data source.  Here is a general outline of the data
    preparation process: It's worth noting that some pipelines might require
    invoking additional functions or scripts to handle specific data sources or
    formats.  These helper scripts can be located within specific directories
    or modules dedicated to the dataset.""")

    data_preparation_div = Div(
        H3("Data Preparation"),
        text,
        table_div,
        Div(
            get_data(target=gen_random_id()),
            style="border: 1px solid #ccc; padding: 20px;",
        ),
    )

    text = P("""Data preprocessing is a crucial step in the data science
    pipeline. It involves cleaning and transforming raw data into a format that
    is suitable for analysis. This process includes handling missing values,
    normalizing data, encoding categorical variables, and more.""")

    preprocessing_steps = pd.DataFrame(
        {
            "Step": [
                "Language Filter",
                "Min Word Count",
                "Title Abstract",
                "Majority Language",
                "Paragraph Count",
                "Frequency",
                "Unigram Log Probability",
            ],
            "Description": [
                "Filtering data based on language",
                "Setting a minimum word count threshold",
                "Extracting information from the title and abstract",
                "Identifying the majority language in the dataset",
                "Counting the number of paragraphs in each document",
                "Calculating the frequency of each word in the dataset",
                "Calculating the log probability of each unigram",
            ],
            "Need": [
                "To remove documents in unwanted languages",
                "To filter out documents with very few words",
                "To extract relevant information for analysis",
                "To understand the distribution of languages in the dataset",
                "To analyze the structure and length of documents",
                "To identify important words in the dataset",
                "To measure the significance of individual words",
            ],
            "Pros": [
                "Improves data quality by removing irrelevant documents",
                "Filters out low-quality or incomplete documents",
                "Provides additional information for analysis",
                "Enables language-specific analysis and insights",
                "Helps understand the complexity and content of documents",
                "Identifies important terms and topics in the dataset",
                "Quantifies the importance of individual words",
            ],
            "Cons": [
                "May exclude documents in less common languages",
                "May remove documents with valuable information",
                "May introduce bias in the analysis",
                "May not accurately represent the language distribution",
                "May not capture the complexity of document structure",
                "May be sensitive to noise and outliers",
                "May not capture the semantic meaning of words",
            ],
        }
    )

    table_html = preprocessing_steps.to_html(index=False, border=0)
    table_div = Div(NotStr(table_html), style="margin: 40px;")
    data_preprocessing_div = Div(H3("Data Preprocessing"), text, table_div)

    return Div(
        Section(
            H2("Curated Sources"),
            plotly2fasthtml(get_chart_28168342()),
            data_preparation_div,
            data_preprocessing_div,
            id="inner-text",
        )
    )