dataset_utils.py

from datasets import load_dataset
from huggingface_hub import HfApi, hf_hub_download
import faiss
import os
import datetime
import time

# from embedding_model import EmbeddingModel
# from app import EmbeddingModel
from arxiv_stuff import retrieve_arxiv_papers, ARXIV_CATEGORIES_FLAT
from sentence_transformers import SentenceTransformer

# Dataset details
dataset_name = "nomadicsynth/arxiv-dataset-abstract-embeddings"
HF_TOKEN = os.getenv("HF_TOKEN")


class DatasetManager:

    def __init__(
        self,
        dataset_name: str,
        embedding_model: SentenceTransformer,
        hf_token: str = None,
    ):
        """
        Initialize the DatasetManager with the dataset name, Hugging Face token, and embedding model.
        Args:
            dataset_name (str): The name of the dataset on Hugging Face Hub.
            embedding_model (SentenceTransformer): The embedding model to use for generating embeddings.
            hf_token (str): The Hugging Face token for authentication.
        """
        self.dataset_name = dataset_name
        self.hf_token = hf_token
        self.embedding_model = embedding_model
        self.dataset = None

        self.setup_dataset()

    def get_revision_name(self):
        """Generate a timestamp-based revision name."""
        return datetime.datetime.now().strftime("v%Y-%m-%d")

    def get_latest_revision(self):
        """Return the latest timestamp-based revision."""
        api = HfApi()
        print(f"Fetching revisions for dataset: {self.dataset_name}")

        # List all tags in the repository
        refs = api.list_repo_refs(repo_id=self.dataset_name, repo_type="dataset", token=self.hf_token)
        tags = refs.tags

        print(f"Found tags: {[tag.name for tag in tags]}")

        # Filter tags with the "vYYYY-MM-DD" format
        timestamp_tags = [
            tag.name for tag in tags if tag.name.startswith("v") and len(tag.name) == 11 and tag.name[1:11].isdigit()
        ]

        if not timestamp_tags:
            print("No valid timestamp-based revisions found. Using `v1.0.0` as default.")
            return "v1.0.0"
        print(f"Valid timestamp-based revisions: {timestamp_tags}")

        # Sort and return the most recent tag
        latest_revision = sorted(timestamp_tags)[-1]
        print(f"Latest revision determined: {latest_revision}")
        return latest_revision

    def setup_dataset(self):
        """Load dataset with FAISS index."""
        print("Loading dataset from Hugging Face...")

        # Fetch the latest revision dynamically
        latest_revision = self.get_latest_revision()

        # Load dataset
        dataset = load_dataset(
            dataset_name,
            revision=latest_revision,
        )

        # Try to load the index from the Hub
        try:
            print("Downloading pre-built FAISS index...")
            index_path = hf_hub_download(
                repo_id=dataset_name,
                filename="arxiv_faiss_index.faiss",
                revision=latest_revision,
                token=self.hf_token,
                repo_type="dataset",
            )

            print("Loading pre-built FAISS index...")
            dataset["train"].load_faiss_index("embedding", index_path)
            print("Pre-built FAISS index loaded successfully")

        except Exception as e:
            print(f"Could not load pre-built index: {e}")
            print("Building new FAISS index...")

            # Add FAISS index if it doesn't exist
            if not dataset["train"].features.get("embedding"):
                print("Dataset doesn't have 'embedding' column, cannot create FAISS index")
                raise ValueError("Dataset doesn't have 'embedding' column")

            dataset["train"].add_faiss_index(
                column="embedding",
                metric_type=faiss.METRIC_INNER_PRODUCT,
                string_factory="HNSW,RFlat",  # Using reranking
            )

        print(f"Dataset loaded with {len(dataset['train'])} items and FAISS index ready")

        self.dataset = dataset
        return dataset

    def update_dataset_with_new_papers(self):
        """Fetch new papers from arXiv, ensure no duplicates, and update the dataset and FAISS index."""
        if self.dataset is None:
            self.setup_dataset()

        # Get the last update date from the dataset
        last_update_date = max(
            [datetime.datetime.strptime(row["update_date"], "%Y-%m-%d") for row in self.dataset["train"]],
            default=datetime.datetime.now() - datetime.timedelta(days=1),
        )

        # Initialize variables for iterative querying
        start = 0
        max_results_per_query = 100
        all_new_papers = []

        while True:
            # Fetch new papers from arXiv since the last update
            new_papers = retrieve_arxiv_papers(
                categories=list(ARXIV_CATEGORIES_FLAT.keys()),
                start_date=last_update_date,
                end_date=datetime.datetime.now(),
                start=start,
                max_results=max_results_per_query,
            )

            if not new_papers:
                break

            all_new_papers.extend(new_papers)
            start += max_results_per_query

            # Respect the rate limit of 1 query every 3 seconds
            time.sleep(3)

        # Filter out duplicates
        existing_ids = set(row["id"] for row in self.dataset["train"])
        unique_papers = [paper for paper in all_new_papers if paper["arxiv_id"] not in existing_ids]

        if not unique_papers:
            print("No new papers to add.")
            return

        # Add new papers to the dataset
        for paper in unique_papers:
            embedding = self.embedding_model.embed_text(paper["abstract"])
            self.dataset["train"].add_item(
                {
                    "id": paper["arxiv_id"],
                    "title": paper["title"],
                    "authors": ", ".join(paper["authors"]),
                    "categories": ", ".join(paper["categories"]),
                    "abstract": paper["abstract"],
                    "update_date": paper["published_date"],
                    "embedding": embedding,
                }
            )

        # Update the FAISS index
        self.dataset["train"].add_faiss_index(
            column="embedding",
            metric_type=faiss.METRIC_INNER_PRODUCT,
            string_factory="HNSW,RFlat",
        )

        # Save the FAISS index to the Hub
        self.save_faiss_index_to_hub()

        # Save the updated dataset to the Hub with a new revision
        new_revision = self.get_revision_name()
        self.dataset.push_to_hub(
            repo_id=self.dataset_name,
            token=self.hf_token,
            commit_message=f"Update dataset with new papers ({new_revision})",
            revision=new_revision,
        )

        print(f"Dataset updated and saved to the Hub with revision {new_revision}.")

    def save_faiss_index_to_hub(self):
        """Save the FAISS index to the Hub for easy access"""
        local_index_path = "arxiv_faiss_index.faiss"

        # 1. Save the index to a local file
        self.dataset["train"].save_faiss_index("embedding", local_index_path)
        print(f"FAISS index saved locally to {local_index_path}")

        # 2. Upload the index file to the Hub
        from huggingface_hub import upload_file

        remote_path = upload_file(
            path_or_fileobj=local_index_path,
            path_in_repo=local_index_path,  # Same name on the Hub
            repo_id=self.dataset_name,  # Use your dataset repo
            token=self.hf_token,
            repo_type="dataset",  # This is a dataset file
            revision=self.get_revision_name(),  # Use the current revision
            commit_message="Add FAISS index",  # Commit message
        )

        print(f"FAISS index uploaded to Hub at {remote_path}")

        # Remove the local file. It's now stored on the Hub.
        os.remove(local_index_path)