environment.yml

name: sam_adapt
channels:
  - pytorch
  - conda-forge
  - defaults
dependencies:
  - _libgcc_mutex=0.1=main
  - _openmp_mutex=5.1=1_gnu
  - abseil-cpp=20211102.0=hd4dd3e8_0
  - absl-py=1.3.0=py310h06a4308_0
  - aiohttp=3.8.3=py310h5eee18b_0
  - async-timeout=4.0.2=py310h06a4308_0
  - attrs=22.1.0=py310h06a4308_0
  - blas=1.0=mkl
  - blosc=1.21.3=h6a678d5_0
  - bottleneck=1.3.5=py310ha9d4c09_0
  - brotli=1.0.9=h5eee18b_7
  - brotli-bin=1.0.9=h5eee18b_7
  - brotlipy=0.7.0=py310h7f8727e_1002
  - brunsli=0.1=h2531618_0
  - bzip2=1.0.8=h7b6447c_0
  - c-ares=1.19.0=h5eee18b_0
  - ca-certificates=2023.11.17=hbcca054_0
  - cffi=1.15.1=py310h5eee18b_3
  - cfitsio=3.470=h5893167_7
  - charls=2.2.0=h2531618_0
  - cloudpickle=2.2.1=py310h06a4308_0
  - comm=0.1.4=pyhd8ed1ab_0
  - contourpy=1.0.5=py310hdb19cb5_0
  - cpuonly=2.0=0
  - cryptography=39.0.1=py310h9ce1e76_0
  - cudatoolkit=11.3.1=h2bc3f7f_2
  - cytoolz=0.12.0=py310h5eee18b_0
  - dask-core=2023.4.1=py310h06a4308_0
  - dbus=1.13.18=hb2f20db_0
  - debugpy=1.6.7=py310h6a678d5_0
  - decorator=5.1.1=pyhd8ed1ab_0
  - expat=2.4.9=h6a678d5_0
  - ffmpeg=4.3=hf484d3e_0
  - fontconfig=2.14.1=h4c34cd2_2
  - freetype=2.12.1=h4a9f257_0
  - frozenlist=1.3.3=py310h5eee18b_0
  - fsspec=2023.4.0=py310h06a4308_0
  - giflib=5.2.1=h5eee18b_3
  - glib=2.69.1=he621ea3_2
  - gmp=6.2.1=h295c915_3
  - gnutls=3.6.15=he1e5248_0
  - grpc-cpp=1.48.2=h5bf31a4_0
  - grpcio=1.48.2=py310h5bf31a4_0
  - gst-plugins-base=1.14.1=h6a678d5_1
  - gstreamer=1.14.1=h5eee18b_1
  - icu=58.2=he6710b0_3
  - idna=3.4=py310h06a4308_0
  - imagecodecs=2021.8.26=py310h46e8fbd_2
  - imageio=2.26.0=py310h06a4308_0
  - importlib-metadata=6.0.0=py310h06a4308_0
  - importlib_metadata=6.0.0=hd8ed1ab_0
  - intel-openmp=2021.4.0=h06a4308_3561
  - ipykernel=6.26.0=pyhf8b6a83_0
  - joblib=1.1.1=py310h06a4308_0
  - jpeg=9e=h5eee18b_1
  - jupyter_client=8.6.0=pyhd8ed1ab_0
  - jupyter_core=5.5.0=py310hff52083_0
  - jxrlib=1.1=h7b6447c_2
  - kiwisolver=1.4.4=py310h6a678d5_0
  - krb5=1.19.4=h568e23c_0
  - lame=3.100=h7b6447c_0
  - lazy_loader=0.1=py310h06a4308_0
  - lcms2=2.12=h3be6417_0
  - ld_impl_linux-64=2.38=h1181459_1
  - lerc=3.0=h295c915_0
  - libaec=1.0.4=he6710b0_1
  - libbrotlicommon=1.0.9=h5eee18b_7
  - libbrotlidec=1.0.9=h5eee18b_7
  - libbrotlienc=1.0.9=h5eee18b_7
  - libclang=14.0.6=default_hc6dbbc7_1
  - libclang13=14.0.6=default_he11475f_1
  - libcurl=7.88.1=h91b91d3_0
  - libdeflate=1.17=h5eee18b_0
  - libedit=3.1.20221030=h5eee18b_0
  - libev=4.33=h7f8727e_1
  - libevent=2.1.12=h8f2d780_0
  - libffi=3.4.2=h6a678d5_6
  - libgcc=7.2.0=h69d50b8_2
  - libgcc-ng=11.2.0=h1234567_1
  - libgfortran-ng=11.2.0=h00389a5_1
  - libgfortran5=11.2.0=h1234567_1
  - libgomp=11.2.0=h1234567_1
  - libiconv=1.16=h7f8727e_2
  - libidn2=2.3.2=h7f8727e_0
  - libllvm14=14.0.6=hdb19cb5_2
  - libnghttp2=1.46.0=hce63b2e_0
  - libpng=1.6.39=h5eee18b_0
  - libpq=12.9=h16c4e8d_3
  - libprotobuf=3.20.3=he621ea3_0
  - libsodium=1.0.18=h36c2ea0_1
  - libssh2=1.10.0=h8f2d780_0
  - libstdcxx-ng=11.2.0=h1234567_1
  - libtasn1=4.19.0=h5eee18b_0
  - libtiff=4.5.0=h6a678d5_2
  - libunistring=0.9.10=h27cfd23_0
  - libuuid=1.41.5=h5eee18b_0
  - libwebp=1.2.4=h11a3e52_1
  - libwebp-base=1.2.4=h5eee18b_1
  - libxcb=1.15=h7f8727e_0
  - libxkbcommon=1.0.1=h5eee18b_1
  - libxml2=2.10.3=hcbfbd50_0
  - libxslt=1.1.37=h2085143_0
  - libzopfli=1.0.3=he6710b0_0
  - locket=1.0.0=py310h06a4308_0
  - lz4-c=1.9.4=h6a678d5_0
  - markdown=3.4.1=py310h06a4308_0
  - markupsafe=2.1.1=py310h7f8727e_0
  - matplotlib=3.7.1=py310h06a4308_1
  - matplotlib-base=3.7.1=py310h1128e8f_1
  - matplotlib-inline=0.1.6=pyhd8ed1ab_0
  - mkl=2021.4.0=h06a4308_640
  - mkl-service=2.4.0=py310h7f8727e_0
  - mkl_fft=1.3.1=py310hd6ae3a3_0
  - mkl_random=1.2.2=py310h00e6091_0
  - monai=1.1.0=pyhd8ed1ab_0
  - multidict=6.0.2=py310h5eee18b_0
  - munkres=1.1.4=pyh9f0ad1d_0
  - ncurses=6.4=h6a678d5_0
  - nest-asyncio=1.5.8=pyhd8ed1ab_0
  - nettle=3.7.3=hbbd107a_1
  - networkx=2.8.4=py310h06a4308_1
  - nspr=4.33=h295c915_0
  - nss=3.74=h0370c37_0
  - numexpr=2.8.4=py310h8879344_0
  - numpy=1.24.3=py310hd5efca6_0
  - numpy-base=1.24.3=py310h8e6c178_0
  - oauthlib=3.2.2=py310h06a4308_0
  - openh264=2.1.1=h4ff587b_0
  - openjpeg=2.4.0=h3ad879b_0
  - openssl=1.1.1w=h7f8727e_0
  - packaging=23.0=py310h06a4308_0
  - pandas=1.5.3=py310h1128e8f_0
  - parso=0.8.3=pyhd8ed1ab_0
  - pcre=8.45=h295c915_0
  - pexpect=4.8.0=pyh1a96a4e_2
  - pickleshare=0.7.5=py_1003
  - pillow=9.4.0=py310h6a678d5_0
  - pip=23.0.1=py310h06a4308_0
  - platformdirs=4.1.0=pyhd8ed1ab_0
  - ply=3.11=py310h06a4308_0
  - protobuf=3.20.3=py310h6a678d5_0
  - ptyprocess=0.7.0=pyhd3deb0d_0
  - pure_eval=0.2.2=pyhd8ed1ab_0
  - pycparser=2.21=pyhd8ed1ab_0
  - pyjwt=2.4.0=py310h06a4308_0
  - pyopenssl=23.0.0=py310h06a4308_0
  - pyparsing=3.0.9=py310h06a4308_0
  - pyqt=5.15.7=py310h6a678d5_1
  - pysocks=1.7.1=py310h06a4308_0
  - python=3.10.11=h7a1cb2a_2
  - python-dateutil=2.8.2=pyhd8ed1ab_0
  - python_abi=3.10=2_cp310
  - pytorch-mutex=1.0=cpu
  - pytz=2022.7=py310h06a4308_0
  - pyu2f=0.1.5=pyhd8ed1ab_0
  - pywavelets=1.4.1=py310h5eee18b_0
  - pyyaml=6.0=py310h5eee18b_1
  - pyzmq=23.0.0=py310h330234f_0
  - qt-main=5.15.2=h8373d8f_8
  - qt-webengine=5.15.9=hbbf29b9_6
  - qtwebkit=5.212=h3fafdc1_5
  - re2=2022.04.01=h295c915_0
  - readline=8.2=h5eee18b_0
  - requests=2.29.0=py310h06a4308_0
  - scikit-image=0.20.0=py310h6a678d5_0
  - scikit-learn=1.2.2=py310h6a678d5_0
  - scipy=1.10.1=py310hd5efca6_0
  - seaborn=0.12.2=py310h06a4308_0
  - setuptools=66.0.0=py310h06a4308_0
  - sip=6.6.2=py310h6a678d5_0
  - six=1.16.0=pyh6c4a22f_0
  - snappy=1.1.9=h295c915_0
  - sqlite=3.41.2=h5eee18b_0
  - stack_data=0.6.2=pyhd8ed1ab_0
  - tensorboard=2.11.0=py310h06a4308_0
  - tensorboard-data-server=0.6.1=py310h52d8a92_0
  - tensorboard-plugin-wit=1.8.1=py310h06a4308_0
  - tk=8.6.12=h1ccaba5_0
  - toml=0.10.2=pyhd8ed1ab_0
  - toolz=0.12.0=py310h06a4308_0
  - torchaudio=0.12.1=py310_cpu
  - tornado=6.2=py310h5eee18b_0
  - tqdm=4.65.0=py310h2f386ee_0
  - typing_extensions=4.5.0=py310h06a4308_0
  - tzdata=2023c=h04d1e81_0
  - unicodedata2=14.0.0=py310h5764c6d_1
  - urllib3=1.26.15=py310h06a4308_0
  - wheel=0.38.4=py310h06a4308_0
  - xz=5.4.2=h5eee18b_0
  - yaml=0.2.5=h7b6447c_0
  - yarl=1.8.1=py310h5eee18b_0
  - zeromq=4.3.4=h9c3ff4c_1
  - zfp=0.5.5=h295c915_6
  - zipp=3.11.0=py310h06a4308_0
  - zlib=1.2.13=h5eee18b_0
  - zstd=1.5.5=hc292b87_0
  - pip:
      - aiosignal==1.2.0
      - alembic==1.10.4
      - appdirs==1.4.4
      - astor==0.8.1
      - asttokens==2.2.1
      - backcall==0.2.0
      - beautifulsoup4==4.12.2
      - blinker==1.6.2
      - cachetools==4.2.2
      - certifi==2022.12.7
      - charset-normalizer==2.0.4
      - click==8.1.3
      - cmaes==0.9.1
      - colorama==0.4.6
      - colorlog==6.7.0
      - contextlib2==21.6.0
      - coverage==6.5.0
      - coveralls==3.3.1
      - cucim==23.4.1
      - cycler==0.11.0
      - databricks-cli==0.17.7
      - docker==6.1.1
      - docopt==0.6.2
      - einops==0.6.1
      - entrypoints==0.4
      - exceptiongroup==1.1.1
      - executing==1.2.0
      - filelock==3.12.0
      - fire==0.5.0
      - flask==2.3.2
      - fonttools==4.25.0
      - future==0.18.3
      - gdown==4.7.1
      - gitdb==4.0.10
      - gitpython==3.1.31
      - google-auth==2.6.0
      - google-auth-oauthlib==0.4.4
      - greenlet==2.0.2
      - gunicorn==20.1.0
      - h5py==3.8.0
      - huggingface-hub==0.14.1
      - iniconfig==2.0.0
      - ipython==8.13.1
      - itk==5.3.0
      - itk-core==5.3.0
      - itk-filtering==5.3.0
      - itk-io==5.3.0
      - itk-numerics==5.3.0
      - itk-registration==5.3.0
      - itk-segmentation==5.3.0
      - itsdangerous==2.1.2
      - jedi==0.18.2
      - jinja2==3.1.2
      - json-tricks==3.16.1
      - jsonschema==4.17.3
      - kornia==0.4.1
      - lmdb==1.4.1
      - lucent==0.1.0
      - mako==1.2.4
      - mlflow==2.3.1
      - nibabel==5.1.0
      - ninja==1.11.1
      - nni==2.10
      - nptyping==2.5.0
      - opencv-python==4.7.0.72
      - openslide-python==1.1.2
      - optuna==3.1.1
      - partd==1.2.0
      - pluggy==1.0.0
      - pooch==1.4.0
      - prettytable==3.7.0
      - prompt-toolkit==3.0.38
      - psutil==5.9.5
      - pyarrow==11.0.0
      - pyasn1==0.4.8
      - pyasn1-modules==0.2.8
      - pydicom==2.3.1
      - pygments==2.15.1
      - pynrrd==1.0.0
      - pyqt5-sip==12.11.0
      - pyrsistent==0.19.3
      - pytest==7.3.1
      - pytest-mock==3.10.0
      - pythonwebhdfs==0.2.3
      - pytorch-ignite==0.4.10
      - querystring-parser==1.2.4
      - regex==2023.5.5
      - requests-oauthlib==1.3.0
      - responses==0.23.1
      - rsa==4.7.2
      - safetensors==0.4.1
      - schema==0.7.5
      - simplejson==3.19.1
      - smmap==5.0.0
      - soupsieve==2.4.1
      - sqlalchemy==2.0.12
      - sqlparse==0.4.4
      - tabulate==0.9.0
      - tensorboardx==2.2
      - termcolor==2.3.0
      - threadpoolctl==2.2.0
      - tifffile==2021.7.2
      - timm==0.9.12
      - tokenizers==0.12.1
      - tomli==2.0.1
      - torch==1.12.1+cu113
      - torch-lucent==0.1.8
      - torchvision==0.13.1+cu113
      - traitlets==5.9.0
      - transformers==4.21.3
      - typeguard==3.0.2
      - types-pyyaml==6.0.12.9
      - wcwidth==0.2.6
      - websocket-client==1.5.1
      - websockets==11.0.3
      - werkzeug==2.3.4