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-f https://download.pytorch.org/whl/cpu/torch_stable.html -f https://data.pyg.org/whl/torch-2.0.1+cpu.html pandas numpy lmdb # python-lmdb # git+https://github.com/jnwatson/py-lmdb.git git+https://github.com/microsoft/protein-sequence-models.git mlflow scikit-learn seaborn blosum matplotlib fair-esm biotite>=0.40 tqdm # git+https://github.com/HeliXonProtein/OmegaFold.git mdanalysis pdb-tools evodiff torch==2.0.1 torchvision torch_geometric torch_scatter py3Dmol # jax[cpu]==0.4.13 colabfold[alphafold-minus-jax]@git+https://github.com/sokrypton/ColabFold |