Update app.py

app.py

@@ -18,11 +18,11 @@ import os
 
 # Load terminology datasets:
 basedir = os.path.dirname(__file__)
-dataLOINC = pd.read_csv(basedir + "\\" + f'LoincTableCore.csv')
-dataPanels = pd.read_csv(basedir + "\\" + f'PanelsAndForms-ACW1208Labeled.csv')     
-dataSNOMED = pd.read_csv(basedir + "\\" + f'sct2_TextDefinition_Full-en_US1000124_20220901.txt',sep='\t')   
-dataOMS = pd.read_csv(basedir + "\\" + f'SnomedOMS.csv')   
-dataICD10 = pd.read_csv(basedir + "\\" + f'ICD10Diagnosis.csv')   
+dataLOINC = pd.read_csv(basedir + f'LoincTableCore.csv')
+dataPanels = pd.read_csv(basedir + f'PanelsAndForms-ACW1208Labeled.csv')     
+dataSNOMED = pd.read_csv(basedir + f'sct2_TextDefinition_Full-en_US1000124_20220901.txt',sep='\t')   
+dataOMS = pd.read_csv(basedir + f'SnomedOMS.csv')   
+dataICD10 = pd.read_csv(basedir + f'ICD10Diagnosis.csv')   
 
 dir_path = os.path.dirname(os.path.realpath(__file__))
 EXAMPLES = {}
@@ -157,7 +157,7 @@ def group_by_entity(raw):
                     g11 = g1['LOINC_NUM'].to_string().replace(","," ").replace("\n"," ")
                     g12 = g1['COMPONENT'].to_string().replace(","," ").replace("\n"," ")
                     s1 = ("LOINC Terms of entity ," + myEntityGroup + ", with term ," + eterm + ", LOINC codes of ," + g11 + ", and LOINC questions of ," + g12 + ", Label,Value, Label,Value, Label,Value  ")
-                    SaveResult(s1, outputFile)
+                    if g11 != 'Series([]  )': SaveResult(s1, outputFile)
 
                     #LOINC Panels
                     g21 = g2['Loinc'].to_string().replace(","," ").replace("\n"," ")
@@ -165,13 +165,13 @@ def group_by_entity(raw):
                     g23 = g2['ParentLoinc'].to_string().replace(","," ").replace("\n"," ")
                     g24 = g2['ParentName'].to_string().replace(","," ").replace("\n"," ")
                     s2 = ("LOINC Panels of entity ," + myEntityGroup + ", with term ," + eterm + ", LOINC codes of ," + g21 + ", and LOINC name of ," + g22 + ", and Parent codes of ," + g23 + ", with Parent names of ," + g24 + ", Label,Value  ")
-                    SaveResult(s2, outputFile)
+                    if g21 != 'Series([]  )': SaveResult(s2, outputFile)
 
                     #SNOMED
                     g31 = g3['conceptId'].to_string().replace(","," ").replace("\n"," ")
                     g32 = g3['term'].to_string().replace(","," ").replace("\n"," ")
                     s3 = ("SNOMED Terms of entity ," + myEntityGroup + ", with term ," + eterm + ", SNOMED concepts of ," + g31 + ", and SNOMED terms of ," + g32 + ", Label,Value, Label,Value, Label,Value  ")
-                    SaveResult(s3, outputFile)
+                    if g31 != 'Series([]  )': SaveResult(s3, outputFile)
 
                     #OMS
                     g41 = g4['Omaha Code'].to_string().replace(","," ").replace("\n"," ")
@@ -183,10 +183,10 @@ def group_by_entity(raw):
                     if g41 != 'Series([]  )': SaveResult(s4, outputFile)
 
                     #ICD10
-                    g51 = g5['Code'].to_string().replace(","," ")
-                    g52 = g5['Description'].to_string().replace(","," ")
+                    g51 = g5['Code'].to_string().replace(","," ").replace("\n"," ")
+                    g52 = g5['Description'].to_string().replace(","," ").replace("\n"," ")
                     s5 = ("ICD10 matches of entity ," + myEntityGroup + ", with term ," + eterm + ", ICD10 codes of ," + g51 + ", and descriptions of ," + g52 + ", Label,Value, Label,Value, Label,Value  ")
-                    if g51 != 'Series([]  )':SaveResult(s5, outputFile)
+                    if g51 != 'Series([]  )': SaveResult(s5, outputFile)
 
                 except ValueError as err:
                     raise ValueError("Error in group by entity \n" + format_tb(err.__traceback__)[0] + err.args[0] + "\nEnd of error message.") from None