Update app.py

app.py

@@ -18,17 +18,11 @@ import os
 
 # Load terminology datasets:
 basedir = os.path.dirname(__file__)
-#dataLOINC = pd.read_csv(basedir + "\\" + f'LoincTableCore.csv')
-#dataPanels = pd.read_csv(basedir + "\\" + f'PanelsAndForms-ACW1208Labeled.csv')     
-#dataSNOMED = pd.read_csv(basedir + "\\" + f'sct2_TextDefinition_Full-en_US1000124_20220901.txt',sep='\t')   
-#dataOMS = pd.read_csv(basedir + "\\" + f'SnomedOMS.csv')   
-#dataICD10 = pd.read_csv(basedir + "\\" + f'ICD10Diagnosis.csv')   
-
-dataLOINC = pd.read_csv(f'LoincTableCore.csv')
-dataPanels = pd.read_csv(f'PanelsAndForms-ACW1208Labeled.csv')     
-dataSNOMED = pd.read_csv(f'sct2_TextDefinition_Full-en_US1000124_20220901.txt',sep='\t')   
-dataOMS = pd.read_csv(f'SnomedOMS.csv')   
-dataICD10 = pd.read_csv(f'ICD10Diagnosis.csv')   
+dataLOINC = pd.read_csv(basedir + "\\" + f'LoincTableCore.csv')
+dataPanels = pd.read_csv(basedir + "\\" + f'PanelsAndForms-ACW1208Labeled.csv')     
+dataSNOMED = pd.read_csv(basedir + "\\" + f'sct2_TextDefinition_Full-en_US1000124_20220901.txt',sep='\t')   
+dataOMS = pd.read_csv(basedir + "\\" + f'SnomedOMS.csv')   
+dataICD10 = pd.read_csv(basedir + "\\" + f'ICD10Diagnosis.csv')   
 
 dir_path = os.path.dirname(os.path.realpath(__file__))
 EXAMPLES = {}
@@ -160,31 +154,31 @@ def group_by_entity(raw):
                     col = "          1                            2            3         4            5                     6                    7                       8                   9              10                   11                         12       13               14                      15                  16                            17                    18                       19"
                     
                     #LOINC
-                    g11 = g1['LOINC_NUM'].to_string().replace(","," ")
-                    g12 = g1['COMPONENT'].to_string().replace(","," ")
+                    g11 = g1['LOINC_NUM'].to_string().replace(","," ").replace("\n"," ")
+                    g12 = g1['COMPONENT'].to_string().replace(","," ").replace("\n"," ")
                     s1 = ("LOINC Terms of entity ," + myEntityGroup + ", with term ," + eterm + ", LOINC codes of ," + g11 + ", and LOINC questions of ," + g12 + ", Label,Value, Label,Value, Label,Value  ")
                     SaveResult(s1, outputFile)
 
                     #LOINC Panels
-                    g21 = g2['Loinc'].to_string().replace(","," ")
-                    g22 = g2['LoincName'].to_string().replace(","," ")
-                    g23 = g2['ParentLoinc'].to_string().replace(","," ")
-                    g24 = g2['ParentName'].to_string().replace(","," ")
+                    g21 = g2['Loinc'].to_string().replace(","," ").replace("\n"," ")
+                    g22 = g2['LoincName'].to_string().replace(","," ").replace("\n"," ")
+                    g23 = g2['ParentLoinc'].to_string().replace(","," ").replace("\n"," ")
+                    g24 = g2['ParentName'].to_string().replace(","," ").replace("\n"," ")
                     s2 = ("LOINC Panels of entity ," + myEntityGroup + ", with term ," + eterm + ", LOINC codes of ," + g21 + ", and LOINC name of ," + g22 + ", and Parent codes of ," + g23 + ", with Parent names of ," + g24 + ", Label,Value  ")
                     SaveResult(s2, outputFile)
 
                     #SNOMED
-                    g31 = g3['conceptId'].to_string().replace(","," ")
-                    g32 = g3['term'].to_string().replace(","," ")
+                    g31 = g3['conceptId'].to_string().replace(","," ").replace("\n"," ")
+                    g32 = g3['term'].to_string().replace(","," ").replace("\n"," ")
                     s3 = ("SNOMED Terms of entity ," + myEntityGroup + ", with term ," + eterm + ", SNOMED concepts of ," + g31 + ", and SNOMED terms of ," + g32 + ", Label,Value, Label,Value, Label,Value  ")
                     SaveResult(s3, outputFile)
 
                     #OMS
-                    g41 = g4['Omaha Code'].to_string().replace(","," ")
-                    g42 = g4['SNOMED CT concept ID'].to_string().replace(","," ")
-                    g43 = g4['SNOMED CT'].to_string().replace(","," ")
-                    g44 = g4['PR'].to_string().replace(","," ")
-                    g45 = g4['S&S'].to_string().replace(","," ")
+                    g41 = g4['Omaha Code'].to_string().replace(","," ").replace("\n"," ")
+                    g42 = g4['SNOMED CT concept ID'].to_string().replace(","," ").replace("\n"," ")
+                    g43 = g4['SNOMED CT'].to_string().replace(","," ").replace("\n"," ")
+                    g44 = g4['PR'].to_string().replace(","," ").replace("\n"," ")
+                    g45 = g4['S&S'].to_string().replace(","," ").replace("\n"," ")
                     s4 = ("OMS Terms of entity ," + myEntityGroup + ", with term ," + eterm + ", Omaha codes of ," + g41 + ", and SNOMED concepts of ," + g42 + ", and SNOMED codes of ," + g43 + ", and OMS problem of ," + g44 + ", and OMS Sign Symptom of ," + g45)
                     if g41 != 'Series([]  )': SaveResult(s4, outputFile)