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name: Build
on:
push:
branches:
- "*"
pull_request:
branches:
- "*"
workflow_dispatch:
jobs:
build:
runs-on: ubuntu-20.04
steps:
- uses: actions/checkout@v1
- name: Set up Python 3.7
uses: actions/setup-python@v2
with:
python-version: 3.7
- name: Install dependencies
run: pip install wheel setuptools
- name: Build wheel
run: python setup.py bdist_wheel --universal
- name: Upload Python wheel
uses: actions/upload-artifact@v2
with:
name: Python wheel
path: ${{github.workspace}}/dist/livermask-*.whl
if-no-files-found: error
test:
needs: build
runs-on: ${{ matrix.os }}
strategy:
# max-parallel: 10
matrix:
os: [ windows-2019, ubuntu-20.04, macos-11 ]
python-version: [ 3.7 ]
steps:
- uses: actions/checkout@v1
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v2
with:
python-version: ${{ matrix.python-version }}
- name: Download artifact
uses: actions/download-artifact@master
with:
name: "Python wheel"
- name: Install wheel
run: pip install --find-links=. livermask-*
shell: bash
- name: Test CLI
run: livermask --help
- name: Download test sample
run: |
pip install gdown==4.4.0
mkdir samples
mkdir results
cd samples
gdown https://drive.google.com/uc?id=1shjSrFjS4PHE5sTku30PZTLPZpGu24o3
gdown https://drive.google.com/uc?id=1bNmls5o0Rxw5HvBF1IYnEzmpysYJaywN
- name: Test inference .nii
run: |
livermask --input samples --output results --verbose --vessels
|