transformers/examples/research_projects/layoutlmv3/run_funsd_cord.py

#!/usr/bin/env python
# coding=utf-8
# Copyright 2022 The HuggingFace Team All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
#     http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""
Fine-tuning LayoutLMv3 for token classification on FUNSD or CORD.
"""
# You can also adapt this script on your own token classification task and datasets. Pointers for this are left as
# comments.

import logging
import os
import sys
from dataclasses import dataclass, field
from typing import Optional

import datasets
import numpy as np
from datasets import ClassLabel, load_dataset, load_metric

import transformers
from transformers import (
    AutoConfig,
    AutoModelForTokenClassification,
    AutoProcessor,
    HfArgumentParser,
    Trainer,
    TrainingArguments,
    set_seed,
)
from transformers.data.data_collator import default_data_collator
from transformers.trainer_utils import get_last_checkpoint
from transformers.utils import check_min_version
from transformers.utils.versions import require_version


# Will error if the minimal version of Transformers is not installed. Remove at your own risks.
check_min_version("4.19.0.dev0")

require_version("datasets>=1.8.0", "To fix: pip install -r examples/pytorch/token-classification/requirements.txt")

logger = logging.getLogger(__name__)


@dataclass
class ModelArguments:
    """
    Arguments pertaining to which model/config/tokenizer we are going to fine-tune from.
    """

    model_name_or_path: str = field(
        default="microsoft/layoutlmv3-base",
        metadata={"help": "Path to pretrained model or model identifier from huggingface.co/models"},
    )
    config_name: Optional[str] = field(
        default=None, metadata={"help": "Pretrained config name or path if not the same as model_name"}
    )
    processor_name: Optional[str] = field(
        default=None, metadata={"help": "Name or path to the processor files if not the same as model_name"}
    )
    cache_dir: Optional[str] = field(
        default=None,
        metadata={"help": "Where do you want to store the pretrained models downloaded from huggingface.co"},
    )
    model_revision: str = field(
        default="main",
        metadata={"help": "The specific model version to use (can be a branch name, tag name or commit id)."},
    )
    use_auth_token: bool = field(
        default=False,
        metadata={
            "help": (
                "Will use the token generated when running `huggingface-cli login` (necessary to use this script "
                "with private models)."
            )
        },
    )


@dataclass
class DataTrainingArguments:
    """
    Arguments pertaining to what data we are going to input our model for training and eval.
    """

    task_name: Optional[str] = field(default="ner", metadata={"help": "The name of the task (ner, pos...)."})
    dataset_name: Optional[str] = field(
        default="nielsr/funsd-layoutlmv3",
        metadata={"help": "The name of the dataset to use (via the datasets library)."},
    )
    dataset_config_name: Optional[str] = field(
        default=None, metadata={"help": "The configuration name of the dataset to use (via the datasets library)."}
    )
    train_file: Optional[str] = field(
        default=None, metadata={"help": "The input training data file (a csv or JSON file)."}
    )
    validation_file: Optional[str] = field(
        default=None,
        metadata={"help": "An optional input evaluation data file to evaluate on (a csv or JSON file)."},
    )
    test_file: Optional[str] = field(
        default=None,
        metadata={"help": "An optional input test data file to predict on (a csv or JSON file)."},
    )
    text_column_name: Optional[str] = field(
        default=None, metadata={"help": "The column name of text to input in the file (a csv or JSON file)."}
    )
    label_column_name: Optional[str] = field(
        default=None, metadata={"help": "The column name of label to input in the file (a csv or JSON file)."}
    )
    overwrite_cache: bool = field(
        default=False, metadata={"help": "Overwrite the cached training and evaluation sets"}
    )
    preprocessing_num_workers: Optional[int] = field(
        default=None,
        metadata={"help": "The number of processes to use for the preprocessing."},
    )
    max_seq_length: int = field(
        default=512,
        metadata={
            "help": (
                "The maximum total input sequence length after tokenization. If set, sequences longer "
                "than this will be truncated, sequences shorter will be padded."
            )
        },
    )
    max_train_samples: Optional[int] = field(
        default=None,
        metadata={
            "help": (
                "For debugging purposes or quicker training, truncate the number of training examples to this "
                "value if set."
            )
        },
    )
    max_eval_samples: Optional[int] = field(
        default=None,
        metadata={
            "help": (
                "For debugging purposes or quicker training, truncate the number of evaluation examples to this "
                "value if set."
            )
        },
    )
    max_predict_samples: Optional[int] = field(
        default=None,
        metadata={
            "help": (
                "For debugging purposes or quicker training, truncate the number of prediction examples to this "
                "value if set."
            )
        },
    )
    label_all_tokens: bool = field(
        default=False,
        metadata={
            "help": (
                "Whether to put the label for one word on all tokens of generated by that word or just on the "
                "one (in which case the other tokens will have a padding index)."
            )
        },
    )
    return_entity_level_metrics: bool = field(
        default=False,
        metadata={"help": "Whether to return all the entity levels during evaluation or just the overall ones."},
    )

    def __post_init__(self):
        if self.dataset_name is None and self.train_file is None and self.validation_file is None:
            raise ValueError("Need either a dataset name or a training/validation file.")
        else:
            if self.train_file is not None:
                extension = self.train_file.split(".")[-1]
                assert extension in ["csv", "json"], "`train_file` should be a csv or a json file."
            if self.validation_file is not None:
                extension = self.validation_file.split(".")[-1]
                assert extension in ["csv", "json"], "`validation_file` should be a csv or a json file."
        self.task_name = self.task_name.lower()


def main():
    # See all possible arguments in src/transformers/training_args.py
    # or by passing the --help flag to this script.
    # We now keep distinct sets of args, for a cleaner separation of concerns.

    parser = HfArgumentParser((ModelArguments, DataTrainingArguments, TrainingArguments))
    if len(sys.argv) == 2 and sys.argv[1].endswith(".json"):
        # If we pass only one argument to the script and it's the path to a json file,
        # let's parse it to get our arguments.
        model_args, data_args, training_args = parser.parse_json_file(json_file=os.path.abspath(sys.argv[1]))
    else:
        model_args, data_args, training_args = parser.parse_args_into_dataclasses()

    # Setup logging
    logging.basicConfig(
        format="%(asctime)s - %(levelname)s - %(name)s - %(message)s",
        datefmt="%m/%d/%Y %H:%M:%S",
        handlers=[logging.StreamHandler(sys.stdout)],
    )

    log_level = training_args.get_process_log_level()
    logger.setLevel(log_level)
    datasets.utils.logging.set_verbosity(log_level)
    transformers.utils.logging.set_verbosity(log_level)
    transformers.utils.logging.enable_default_handler()
    transformers.utils.logging.enable_explicit_format()

    # Log on each process the small summary:
    logger.warning(
        f"Process rank: {training_args.local_rank}, device: {training_args.device}, n_gpu: {training_args.n_gpu}"
        + f"distributed training: {bool(training_args.local_rank != -1)}, 16-bits training: {training_args.fp16}"
    )
    logger.info(f"Training/evaluation parameters {training_args}")

    # Detecting last checkpoint.
    last_checkpoint = None
    if os.path.isdir(training_args.output_dir) and training_args.do_train and not training_args.overwrite_output_dir:
        last_checkpoint = get_last_checkpoint(training_args.output_dir)
        if last_checkpoint is None and len(os.listdir(training_args.output_dir)) > 0:
            raise ValueError(
                f"Output directory ({training_args.output_dir}) already exists and is not empty. "
                "Use --overwrite_output_dir to overcome."
            )
        elif last_checkpoint is not None and training_args.resume_from_checkpoint is None:
            logger.info(
                f"Checkpoint detected, resuming training at {last_checkpoint}. To avoid this behavior, change "
                "the `--output_dir` or add `--overwrite_output_dir` to train from scratch."
            )

    # Set seed before initializing model.
    set_seed(training_args.seed)

    # Get the datasets
    # In distributed training, the load_dataset function guarantee that only one local process can concurrently
    # download the dataset.
    if data_args.dataset_name == "funsd":
        # Downloading and loading a dataset from the hub.
        dataset = load_dataset(
            "nielsr/funsd-layoutlmv3",
            data_args.dataset_config_name,
            cache_dir=model_args.cache_dir,
            use_auth_token=True if model_args.use_auth_token else None,
        )
    elif data_args.dataset_name == "cord":
        # Downloading and loading a dataset from the hub.
        dataset = load_dataset(
            "nielsr/cord-layoutlmv3",
            data_args.dataset_config_name,
            cache_dir=model_args.cache_dir,
            use_auth_token=True if model_args.use_auth_token else None,
        )
    else:
        raise ValueError("This script only supports either FUNSD or CORD out-of-the-box.")

    if training_args.do_train:
        column_names = dataset["train"].column_names
        features = dataset["train"].features
    else:
        column_names = dataset["test"].column_names
        features = dataset["test"].features

    image_column_name = "image"
    text_column_name = "words" if "words" in column_names else "tokens"
    boxes_column_name = "bboxes"
    label_column_name = (
        f"{data_args.task_name}_tags" if f"{data_args.task_name}_tags" in column_names else column_names[1]
    )

    remove_columns = column_names

    # In the event the labels are not a `Sequence[ClassLabel]`, we will need to go through the dataset to get the
    # unique labels.
    def get_label_list(labels):
        unique_labels = set()
        for label in labels:
            unique_labels = unique_labels | set(label)
        label_list = list(unique_labels)
        label_list.sort()
        return label_list

    # If the labels are of type ClassLabel, they are already integers and we have the map stored somewhere.
    # Otherwise, we have to get the list of labels manually.
    if isinstance(features[label_column_name].feature, ClassLabel):
        label_list = features[label_column_name].feature.names
        # No need to convert the labels since they are already ints.
        id2label = dict(enumerate(label_list))
        label2id = {v: k for k, v in enumerate(label_list)}
    else:
        label_list = get_label_list(datasets["train"][label_column_name])
        id2label = dict(enumerate(label_list))
        label2id = {v: k for k, v in enumerate(label_list)}
    num_labels = len(label_list)

    # Load pretrained model and processor
    #
    # Distributed training:
    # The .from_pretrained methods guarantee that only one local process can concurrently
    # download model & vocab.
    config = AutoConfig.from_pretrained(
        model_args.config_name if model_args.config_name else model_args.model_name_or_path,
        num_labels=num_labels,
        finetuning_task=data_args.task_name,
        cache_dir=model_args.cache_dir,
        revision=model_args.model_revision,
        use_auth_token=True if model_args.use_auth_token else None,
    )

    processor = AutoProcessor.from_pretrained(
        model_args.processor_name if model_args.processor_name else model_args.model_name_or_path,
        cache_dir=model_args.cache_dir,
        use_fast=True,
        revision=model_args.model_revision,
        use_auth_token=True if model_args.use_auth_token else None,
        add_prefix_space=True,
        apply_ocr=False,
    )

    model = AutoModelForTokenClassification.from_pretrained(
        model_args.model_name_or_path,
        from_tf=bool(".ckpt" in model_args.model_name_or_path),
        config=config,
        cache_dir=model_args.cache_dir,
        revision=model_args.model_revision,
        use_auth_token=True if model_args.use_auth_token else None,
    )

    # Set the correspondences label/ID inside the model config
    model.config.label2id = label2id
    model.config.id2label = id2label

    # Preprocessing the dataset
    # The processor does everything for us (prepare the image using LayoutLMv3ImageProcessor
    # and prepare the words, boxes and word-level labels using LayoutLMv3TokenizerFast)
    def prepare_examples(examples):
        images = examples[image_column_name]
        words = examples[text_column_name]
        boxes = examples[boxes_column_name]
        word_labels = examples[label_column_name]

        encoding = processor(
            images,
            words,
            boxes=boxes,
            word_labels=word_labels,
            truncation=True,
            padding="max_length",
            max_length=data_args.max_seq_length,
        )

        return encoding

    if training_args.do_train:
        if "train" not in dataset:
            raise ValueError("--do_train requires a train dataset")
        train_dataset = dataset["train"]
        if data_args.max_train_samples is not None:
            train_dataset = train_dataset.select(range(data_args.max_train_samples))
        with training_args.main_process_first(desc="train dataset map pre-processing"):
            train_dataset = train_dataset.map(
                prepare_examples,
                batched=True,
                remove_columns=remove_columns,
                num_proc=data_args.preprocessing_num_workers,
                load_from_cache_file=not data_args.overwrite_cache,
            )

    if training_args.do_eval:
        validation_name = "test"
        if validation_name not in dataset:
            raise ValueError("--do_eval requires a validation dataset")
        eval_dataset = dataset[validation_name]
        if data_args.max_eval_samples is not None:
            eval_dataset = eval_dataset.select(range(data_args.max_eval_samples))
        with training_args.main_process_first(desc="validation dataset map pre-processing"):
            eval_dataset = eval_dataset.map(
                prepare_examples,
                batched=True,
                remove_columns=remove_columns,
                num_proc=data_args.preprocessing_num_workers,
                load_from_cache_file=not data_args.overwrite_cache,
            )

    if training_args.do_predict:
        if "test" not in datasets:
            raise ValueError("--do_predict requires a test dataset")
        predict_dataset = datasets["test"]
        if data_args.max_predict_samples is not None:
            max_predict_samples = min(len(predict_dataset), data_args.max_predict_samples)
            predict_dataset = predict_dataset.select(range(max_predict_samples))
        with training_args.main_process_first(desc="prediction dataset map pre-processing"):
            predict_dataset = predict_dataset.map(
                prepare_examples,
                batched=True,
                remove_columns=remove_columns,
                num_proc=data_args.preprocessing_num_workers,
                load_from_cache_file=not data_args.overwrite_cache,
            )

    # Metrics
    metric = load_metric("seqeval")

    def compute_metrics(p):
        predictions, labels = p
        predictions = np.argmax(predictions, axis=2)

        # Remove ignored index (special tokens)
        true_predictions = [
            [label_list[p] for (p, l) in zip(prediction, label) if l != -100]
            for prediction, label in zip(predictions, labels)
        ]
        true_labels = [
            [label_list[l] for (p, l) in zip(prediction, label) if l != -100]
            for prediction, label in zip(predictions, labels)
        ]

        results = metric.compute(predictions=true_predictions, references=true_labels)
        if data_args.return_entity_level_metrics:
            # Unpack nested dictionaries
            final_results = {}
            for key, value in results.items():
                if isinstance(value, dict):
                    for n, v in value.items():
                        final_results[f"{key}_{n}"] = v
                else:
                    final_results[key] = value
            return final_results
        else:
            return {
                "precision": results["overall_precision"],
                "recall": results["overall_recall"],
                "f1": results["overall_f1"],
                "accuracy": results["overall_accuracy"],
            }

    # Initialize our Trainer
    trainer = Trainer(
        model=model,
        args=training_args,
        train_dataset=train_dataset if training_args.do_train else None,
        eval_dataset=eval_dataset if training_args.do_eval else None,
        tokenizer=processor,
        data_collator=default_data_collator,
        compute_metrics=compute_metrics,
    )

    # Training
    if training_args.do_train:
        checkpoint = None
        if training_args.resume_from_checkpoint is not None:
            checkpoint = training_args.resume_from_checkpoint
        elif last_checkpoint is not None:
            checkpoint = last_checkpoint
        train_result = trainer.train(resume_from_checkpoint=checkpoint)
        metrics = train_result.metrics
        trainer.save_model()  # Saves the tokenizer too for easy upload

        max_train_samples = (
            data_args.max_train_samples if data_args.max_train_samples is not None else len(train_dataset)
        )
        metrics["train_samples"] = min(max_train_samples, len(train_dataset))

        trainer.log_metrics("train", metrics)
        trainer.save_metrics("train", metrics)
        trainer.save_state()

    # Evaluation
    if training_args.do_eval:
        logger.info("*** Evaluate ***")

        metrics = trainer.evaluate()

        max_eval_samples = data_args.max_eval_samples if data_args.max_eval_samples is not None else len(eval_dataset)
        metrics["eval_samples"] = min(max_eval_samples, len(eval_dataset))

        trainer.log_metrics("eval", metrics)
        trainer.save_metrics("eval", metrics)

    # Predict
    if training_args.do_predict:
        logger.info("*** Predict ***")

        predictions, labels, metrics = trainer.predict(predict_dataset, metric_key_prefix="predict")
        predictions = np.argmax(predictions, axis=2)

        # Remove ignored index (special tokens)
        true_predictions = [
            [label_list[p] for (p, l) in zip(prediction, label) if l != -100]
            for prediction, label in zip(predictions, labels)
        ]

        trainer.log_metrics("predict", metrics)
        trainer.save_metrics("predict", metrics)

        # Save predictions
        output_predictions_file = os.path.join(training_args.output_dir, "predictions.txt")
        if trainer.is_world_process_zero():
            with open(output_predictions_file, "w") as writer:
                for prediction in true_predictions:
                    writer.write(" ".join(prediction) + "\n")

    kwargs = {"finetuned_from": model_args.model_name_or_path, "tasks": "token-classification"}
    if data_args.dataset_name is not None:
        kwargs["dataset_tags"] = data_args.dataset_name
        if data_args.dataset_config_name is not None:
            kwargs["dataset_args"] = data_args.dataset_config_name
            kwargs["dataset"] = f"{data_args.dataset_name} {data_args.dataset_config_name}"
        else:
            kwargs["dataset"] = data_args.dataset_name

    if training_args.push_to_hub:
        trainer.push_to_hub(**kwargs)
    else:
        trainer.create_model_card(**kwargs)


def _mp_fn(index):
    # For xla_spawn (TPUs)
    main()


if __name__ == "__main__":
    main()