utils.py

from pyvis.network import Network
from GoogleNews import GoogleNews
from newspaper import Article, ArticleException
import math
import torch
from kb import KB
import pickle

def extract_relations_from_model_output(text):
    relations = []
    relation, subject, relation, object_ = '', '', '', ''
    text = text.strip()
    current = 'x'
    text_replaced = text.replace("<s>", "").replace("<pad>", "").replace("</s>", "")
    for token in text_replaced.split():
        if token == "<triplet>":
            current = 't'
            if relation != '':
                relations.append({
                    'head': subject.strip(),
                    'type': relation.strip(),
                    'tail': object_.strip()
                })
                relation = ''
            subject = ''
        elif token == "<subj>":
            current = 's'
            if relation != '':
                relations.append({
                    'head': subject.strip(),
                    'type': relation.strip(),
                    'tail': object_.strip()
                })
            object_ = ''
        elif token == "<obj>":
            current = 'o'
            relation = ''
        else:
            if current == 't':
                subject += ' ' + token
            elif current == 's':
                object_ += ' ' + token
            elif current == 'o':
                relation += ' ' + token
    if subject != '' and relation != '' and object_ != '':
        relations.append({
            'head': subject.strip(),
            'type': relation.strip(),
            'tail': object_.strip()
        })
    return relations

def from_text_to_kb(text, model, tokenizer, article_url, span_length=128, article_title=None,
                    article_publish_date=None, verbose=False):
    # tokenize whole text
    inputs = tokenizer([text], return_tensors="pt")

    # compute span boundaries
    num_tokens = len(inputs["input_ids"][0])
    if verbose:
        print(f"Input has {num_tokens} tokens")
    num_spans = math.ceil(num_tokens / span_length)
    if verbose:
        print(f"Input has {num_spans} spans")
    overlap = math.ceil((num_spans * span_length - num_tokens) / 
                        max(num_spans - 1, 1))
    spans_boundaries = []
    start = 0
    for i in range(num_spans):
        spans_boundaries.append([start + span_length * i,
                                 start + span_length * (i + 1)])
        start -= overlap
    if verbose:
        print(f"Span boundaries are {spans_boundaries}")

    # transform input with spans
    tensor_ids = [inputs["input_ids"][0][boundary[0]:boundary[1]]
                  for boundary in spans_boundaries]
    tensor_masks = [inputs["attention_mask"][0][boundary[0]:boundary[1]]
                    for boundary in spans_boundaries]
    inputs = {
        "input_ids": torch.stack(tensor_ids),
        "attention_mask": torch.stack(tensor_masks)
    }

    # generate relations
    num_return_sequences = 3
    gen_kwargs = {
        "max_length": 256,
        "length_penalty": 0,
        "num_beams": 3,
        "num_return_sequences": num_return_sequences
    }
    generated_tokens = model.generate(
        **inputs,
        **gen_kwargs,
    )

    # decode relations
    decoded_preds = tokenizer.batch_decode(generated_tokens,
                                           skip_special_tokens=False)

    # create kb
    kb = KB()
    i = 0
    for sentence_pred in decoded_preds:
        current_span_index = i // num_return_sequences
        relations = extract_relations_from_model_output(sentence_pred)
        for relation in relations:
            relation["meta"] = {
                article_url: {
                    "spans": [spans_boundaries[current_span_index]]
                }
            }
            kb.add_relation(relation, article_title, article_publish_date)
        i += 1

    return kb

def get_article(url):
    article = Article(url)
    article.download()
    article.parse()
    return article

def from_url_to_kb(url, model, tokenizer):
    article = get_article(url)
    config = {
        "article_title": article.title,
        "article_publish_date": article.publish_date
    }
    kb = from_text_to_kb(article.text, model, tokenizer, article.url, **config)
    return kb

def get_news_links(query, lang="en", region="US", pages=1):
    googlenews = GoogleNews(lang=lang, region=region)
    googlenews.search(query)
    all_urls = []
    for page in range(pages):
        googlenews.get_page(page)
        all_urls += googlenews.get_links()
    return list(set(all_urls))

def from_urls_to_kb(urls, model, tokenizer, verbose=False):
    kb = KB()
    if verbose:
        print(f"{len(urls)} links to visit")
    for url in urls:
        if verbose:
            print(f"Visiting {url}...")
        try:
            kb_url = from_url_to_kb(url, model, tokenizer)
            kb.merge_with_kb(kb_url)
        except ArticleException:
            if verbose:
                print(f"  Couldn't download article at url {url}")
    return kb

def save_network_html(kb, filename="network.html"):
    # create network
    net = Network(directed=True, width="700px", height="700px")

    # nodes
    color_entity = "#00FF00"
    for e in kb.entities:
        net.add_node(e, shape="circle", color=color_entity)

    # edges
    for r in kb.relations:
        net.add_edge(r["head"], r["tail"],
                    title=r["type"], label=r["type"])

    # save network
    net.repulsion(
        node_distance=200,
        central_gravity=0.2,
        spring_length=200,
        spring_strength=0.05,
        damping=0.09
    )
    net.set_edge_smooth('dynamic')
    net.show(filename)

def save_kb(kb, filename):
    with open(filename, "wb") as f:
        pickle.dump(kb, f)

class CustomUnpickler(pickle.Unpickler):
    def find_class(self, module, name):
        if name == 'KB':
            return KB
        return super().find_class(module, name)

def load_kb(filename):
    res = None
    with open(filename, "rb") as f:
        res = CustomUnpickler(f).load()
    return res