climategan / USAGE.md
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# ClimateGAN
- [ClimateGAN](#climategan)
- [Setup](#setup)
- [Coding conventions](#coding-conventions)
- [updates](#updates)
- [interfaces](#interfaces)
- [Logging on comet](#logging-on-comet)
- [Resources](#resources)
- [Example](#example)
- [Release process](#release-process)
## Setup
**`PyTorch >= 1.1.0`** otherwise optimizer.step() and scheduler.step() are in the wrong order ([docs](https://pytorch.org/docs/stable/optim.html#how-to-adjust-learning-rate))
**pytorch==1.6** to use pytorch-xla or automatic mixed precision (`amp` branch).
Configuration files use the **YAML** syntax. If you don't know what `&` and `<<` mean, you'll have a hard time reading the files. Have a look at:
* https://dev.to/paulasantamaria/introduction-to-yaml-125f
* https://stackoverflow.com/questions/41063361/what-is-the-double-left-arrow-syntax-in-yaml-called-and-wheres-it-specced/41065222
**pip**
```
$ pip install comet_ml scipy opencv-python torch torchvision omegaconf==1.4.1 hydra-core==0.11.3 scikit-image imageio addict tqdm torch_optimizer
```
## Coding conventions
* Tasks
* `x` is an input image, in [-1, 1]
* `s` is a segmentation target with `long` classes
* `d` is a depth map target in R, may be actually `log(depth)` or `1/depth`
* `m` is a binary mask with 1s where water is/should be
* Domains
* `r` is the *real* domain for the masker. Input images are real pictures of urban/suburban/rural areas
* `s` is the *simulated* domain for the masker. Input images are taken from our Unity world
* `rf` is the *real flooded* domain for the painter. Training images are pairs `(x, m)` of flooded scenes for which the water should be reconstructed, in the validation data input images are not flooded and we provide a manually labeled mask `m`
* `kitti` is a special `s` domain to pre-train the masker on [Virtual Kitti 2](https://europe.naverlabs.com/research/computer-vision/proxy-virtual-worlds-vkitti-2/)
* it alters the `trainer.loaders` dict to select relevant data sources from `trainer.all_loaders` in `trainer.switch_data()`. The rest of the code is identical.
* Flow
* This describes the call stack for the trainers standard training procedure
* `train()`
* `run_epoch()`
* `update_G()`
* `zero_grad(G)`
* `get_G_loss()`
* `get_masker_loss()`
* `masker_m_loss()` -> masking loss
* `masker_s_loss()` -> segmentation loss
* `masker_d_loss()` -> depth estimation loss
* `get_painter_loss()` -> painter's loss
* `g_loss.backward()`
* `g_opt_step()`
* `update_D()`
* `zero_grad(D)`
* `get_D_loss()`
* painter's disc losses
* `masker_m_loss()` -> masking AdvEnt disc loss
* `masker_s_loss()` -> segmentation AdvEnt disc loss
* `d_loss.backward()`
* `d_opt_step()`
* `update_learning_rates()` -> update learning rates according to schedules defined in `opts.gen.opt` and `opts.dis.opt`
* `run_validation()`
* compute val losses
* `eval_images()` -> compute metrics
* `log_comet_images()` -> compute and upload inferences
* `save()`
### Resuming
Set `train.resume` to `True` in `opts.yaml` and specify where to load the weights:
Use a config's `load_path` namespace. It should have sub-keys `m`, `p` and `pm`:
```yaml
load_paths:
p: none # Painter weights
m: none # Masker weights
pm: none # Painter + Masker weights (single ckpt for both)
```
1. any path which leads to a dir will be loaded as `path / checkpoints / latest_ckpt.pth`
2. if you want to specify a specific checkpoint (not the latest), it MUST be a `.pth` file
3. resuming a `P` **OR** an `M` model, you may only specify 1 of `load_path.p` **OR** `load_path.m`.
You may also leave **BOTH** at `none`, in which case `output_path / checkpoints / latest_ckpt.pth`
will be used
4. resuming a P+M model, you may specify (`p` AND `m`) **OR** `pm` **OR** leave all at `none`,
in which case `output_path / checkpoints / latest_ckpt.pth` will be used to load from
a single checkpoint
### Generator
* **Encoder**:
`trainer.G.encoder` Deeplabv2 or v3-based encoder
* Code borrowed from
* https://github.com/valeoai/ADVENT/blob/master/advent/model/deeplabv2.py
* https://github.com/CoinCheung/DeepLab-v3-plus-cityscapes
* **Decoders**:
* `trainer.G.decoders["s"]` -> *Segmentation* -> DLV3+ architecture (ASPP + Decoder)
* `trainer.G.decoders["d"]` -> *Depth* -> ResBlocks + (Upsample + Conv)
* `trainer.G.decoders["m"]` -> *Mask* -> ResBlocks + (Upsample + Conv) -> Binary mask: 1 = water should be there
* `trainer.G.mask()` predicts a mask and optionally applies `sigmoid` from an `x` input or a `z` input
* **Painter**: `trainer.G.painter` -> [GauGAN SPADE-based](https://github.com/NVlabs/SPADE)
* input = masked image
* `trainer.G.paint(m, x)` higher level function which takes care of masking
* If `opts.gen.p.paste_original_content` the painter should only create water and not reconstruct outside the mask: the output of `paint()` is `painted * m + x * (1 - m)`
High level methods of interest:
* `trainer.infer_all()` creates a dictionary of events with keys `flood` `wildfire` and `smog`. Can take in a single image or a batch, of numpy arrays or torch tensors, on CPU/GPU/TPU. This method calls, amongst others:
* `trainer.G.encode()` to compute the shared latent vector `z`
* `trainer.G.mask(z=z)` to infer the mask
* `trainer.compute_fire(x, segmentation)` to create a wildfire image from `x` and inferred segmentation
* `trainer.compute_smog(x, depth)` to create a smog image from `x` and inferred depth
* `trainer.compute_flood(x, mask)` to create a flood image from `x` and inferred mask using the painter (`trainer.G.paint(m, x)`)
* `Trainer.resume_from_path()` static method to resume a trainer from a path
### Discriminator
## updates
multi-batch:
```
multi_domain_batch = {"rf: batch0, "r": batch1, "s": batch2}
```
## interfaces
### batches
```python
batch = Dict({
"data": {
"d": depthmap,,
"s": segmentation_map,
"m": binary_mask
"x": real_flooded_image,
},
"paths":{
same_keys: path_to_file
}
"domain": list(rf | r | s),
"mode": list(train | val)
})
```
### data
#### json files
| name | domain | description | author |
| :--------------------------------------------- | :----: | :------------------------------------------------------------------------- | :-------: |
| **train_r_full.json, val_r_full.json** | r | MiDaS+ Segmentation pseudo-labels .pt (HRNet + Cityscapes) | Mélisande |
| **train_s_full.json, val_s_full.json** | s | Simulated data from Unity11k urban + Unity suburban dataset | *** |
| train_s_nofences.json, val_s_nofences.json | s | Simulated data from Unity11k urban + Unity suburban dataset without fences | Alexia |
| train_r_full_pl.json, val_r_full_pl.json | r | MegaDepth + Segmentation pseudo-labels .pt (HRNet + Cityscapes) | Alexia |
| train_r_full_midas.json, val_r_full_midas.json | r | MiDaS+ Segmentation (HRNet + Cityscapes) | Mélisande |
| train_r_full_old.json, val_r_full_old.json | r | MegaDepth+ Segmentation (HRNet + Cityscapes) | *** |
| train_r_nopeople.json, val_r_nopeople.json | r | Same training data as above with people removed | Sasha |
| train_rf_with_sim.json | rf | Doubled train_rf's size with sim data (randomly chosen) | Victor |
| train_rf.json | rf | UPDATE (12/12/20): added 50 ims & masks from ADE20K Outdoors | Victor |
| train_allres.json, val_allres.json | rf | includes both lowres and highres from ORCA_water_seg | Tianyu |
| train_highres_only.json, val_highres_only.json | rf | includes only highres from ORCA_water_seg | Tianyu |
```yaml
# data file ; one for each r|s
- x: /path/to/image
m: /path/to/mask
s: /path/to/segmentation map
- x: /path/to/another image
d: /path/to/depth map
m: /path/to/mask
s: /path/to/segmentation map
- x: ...
```
or
```json
[
{
"x": "/Users/victor/Documents/ccai/github/climategan/example_data/gsv_000005.jpg",
"s": "/Users/victor/Documents/ccai/github/climategan/example_data/gsv_000005.npy",
"d": "/Users/victor/Documents/ccai/github/climategan/example_data/gsv_000005_depth.jpg"
},
{
"x": "/Users/victor/Documents/ccai/github/climategan/example_data/gsv_000006.jpg",
"s": "/Users/victor/Documents/ccai/github/climategan/example_data/gsv_000006.npy",
"d": "/Users/victor/Documents/ccai/github/climategan/example_data/gsv_000006_depth.jpg"
}
]
```
The json files used are located at `/network/tmp1/ccai/data/climategan/`. In the basenames, `_s` denotes simulated domain data and `_r` real domain data.
The `base` folder contains json files with paths to images (`"x"`key) and masks (taken as ground truth for the area that should be flooded, `"m"` key).
The `seg` folder contains json files and keys `"x"`, `"m"` and `"s"` (segmentation) for each image.
loaders
```
loaders = Dict({
train: { r: loader, s: loader},
val: { r: loader, s: loader}
})
```
### losses
`trainer.losses` is a dictionary mapping to loss functions to optimize for the 3 main parts of the architecture: generator `G`, discriminators `D`:
```python
trainer.losses = {
"G":{ # generator
"gan": { # gan loss from the discriminators
"a": GANLoss, # adaptation decoder
"t": GANLoss # translation decoder
},
"cycle": { # cycle-consistency loss
"a": l1 | l2,,
"t": l1 | l2,
},
"auto": { # auto-encoding loss a.k.a. reconstruction loss
"a": l1 | l2,
"t": l1 | l2
},
"tasks": { # specific losses for each auxillary task
"d": func, # depth estimation
"h": func, # height estimation
"s": cross_entropy_2d, # segmentation
"w": func, # water generation
},
"classifier": l1 | l2 | CE # loss from fooling the classifier
},
"D": GANLoss, # discriminator losses from the generator and true data
"C": l1 | l2 | CE # classifier should predict the right 1-h vector [rf, rn, sf, sn]
}
```
## Logging on comet
Comet.ml will look for api keys in the following order: argument to the `Experiment(api_key=...)` call, `COMET_API_KEY` environment variable, `.comet.config` file in the current working directory, `.comet.config` in the current user's home directory.
If your not managing several comet accounts at the same time, I recommend putting `.comet.config` in your home as such:
```
[comet]
api_key=<api_key>
workspace=vict0rsch
rest_api_key=<rest_api_key>
```
### Tests
Run tests by executing `python test_trainer.py`. You can add `--no_delete` not to delete the comet experiment at exit and inspect uploads.
Write tests as scenarios by adding to the list `test_scenarios` in the file. A scenario is a dict of overrides over the base opts in `shared/trainer/defaults.yaml`. You can create special flags for the scenario by adding keys which start with `__`. For instance, `__doc` is a mandatory key in any scenario describing it succinctly.
## Resources
[Tricks and Tips for Training a GAN](https://chloes-dl.com/2019/11/19/tricks-and-tips-for-training-a-gan/)
[GAN Hacks](https://github.com/soumith/ganhacks)
[Keep Calm and train a GAN. Pitfalls and Tips on training Generative Adversarial Networks](https://medium.com/@utk.is.here/keep-calm-and-train-a-gan-pitfalls-and-tips-on-training-generative-adversarial-networks-edd529764aa9)
## Example
**Inference: computing floods**
```python
from pathlib import Path
from skimage.io import imsave
from tqdm import tqdm
from climategan.trainer import Trainer
from climategan.utils import find_images
from climategan.tutils import tensor_ims_to_np_uint8s
from climategan.transforms import PrepareInference
model_path = "some/path/to/output/folder" # not .ckpt
input_folder = "path/to/a/folder/with/images"
output_path = "path/where/images/will/be/written"
# resume trainer
trainer = Trainer.resume_from_path(model_path, new_exp=None, inference=True)
# find paths for all images in the input folder. There is a recursive option.
im_paths = sorted(find_images(input_folder), key=lambda x: x.name)
# Load images into tensors
# * smaller side resized to 640 - keeping aspect ratio
# * then longer side is cropped in the center
# * result is a 1x3x640x640 float tensor in [-1; 1]
xs = PrepareInference()(im_paths)
# send to device
xs = [x.to(trainer.device) for x in xs]
# compute flood
# * compute mask
# * binarize mask if bin_value > 0
# * paint x using this mask
ys = [trainer.compute_flood(x, bin_value=0.5) for x in tqdm(xs)]
# convert 1x3x640x640 float tensors in [-1; 1] into 640x640x3 numpy arrays in [0, 255]
np_ys = [tensor_ims_to_np_uint8s(y) for y in tqdm(ys)]
# write images
for i, n in tqdm(zip(im_paths, np_ys), total=len(im_paths)):
imsave(Path(output_path) / i.name, n)
```
## Release process
In the `release/` folder
* create a `model/` folder
* create folders `model/masker/` and `model/painter/`
* add the climategan code in `release/`: `git clone git@github.com:cc-ai/climategan.git`
* move the code to `release/`: `cp climategan/* . && rm -rf climategan`
* update `model/masker/opts/events` with `events:` from `shared/trainer/opts.yaml`
* update `model/masker/opts/val.val_painter` to `"model/painter/checkpoints/latest_ckpt.pth"`
* update `model/masker/opts/load_paths.m` to `"model/masker/checkpoints/latest_ckpt.pth"`