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File size: 2,062 Bytes
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{
"validate#dataset#cache_rate": 0,
"validate#postprocessing": {
"_target_": "Compose",
"transforms": [
{
"_target_": "Activationsd",
"keys": "pred",
"softmax": true
},
{
"_target_": "AsDiscreted",
"keys": [
"pred",
"label"
],
"argmax": [
true,
false
],
"to_onehot": 4
},
{
"_target_": "ToTensord",
"keys": [
"pred",
"label"
],
"device": "@device"
},
{
"_target_": "SaveImaged",
"_disabled_": true,
"keys": "pred",
"meta_keys": "pred_meta_dict",
"output_dir": "@output_dir",
"output_ext": ".json"
}
]
},
"validate#handlers": [
{
"_target_": "CheckpointLoader",
"load_path": "$@ckpt_dir + '/model.pt'",
"load_dict": {
"model": "@network"
}
},
{
"_target_": "StatsHandler",
"iteration_log": false
},
{
"_target_": "MetricsSaver",
"save_dir": "@output_dir",
"metrics": [
"val_f1",
"val_accuracy"
],
"metric_details": [
"val_f1"
],
"batch_transform": "$monai.handlers.from_engine(['image_meta_dict'])",
"summary_ops": "*"
}
],
"evaluating": [
"$import sys",
"$sys.path.append(@bundle_root)",
"$setattr(torch.backends.cudnn, 'benchmark', True)",
"$import scripts",
"$monai.data.register_writer('json', scripts.ClassificationWriter)",
"$@validate#evaluator.run()"
]
}
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