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hexviz
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hexviz

Commit History

Store selected head and layer sequence
2d68959

aksell commited on

Add report a bug and get help link + about us text
48a0092

aksell commited on

Clear selected chains when PDB is changed
8496929

aksell commited on

Hide manual labeling behind selector
a5100f8

aksell commited on

Share pdb selector between views
c2b2898

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Persist selected PDB, chain and model in session state
708426b

aksell commited on

Change example PDB to one with a ligand
ae26fb8

aksell commited on

Show ligands
2e6af7e

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🧬emojis in filenames!
e8f7474

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Capitalize page name
179d4fd

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Update text description
c438fc8

aksell commited on

Don't skip heads and layers by deafult
7a11152

aksell commited on

Allow selecting chain ID in heatmap
e9d64be

aksell commited on

Allow plotting single row or column or a single head
13af878

aksell commited on

Use dynamic offset for row labels, makes them nice ✨
5ddca75

aksell commited on

Fix subplot sizing and bug
0fa194b

aksell commited on

Copy attention tensor to CPU for streamlit caching
9d9c196

aksell commited on

Allow selecting heads to plot
8799d0b

aksell commited on

Fix README typo
28de159

aksell commited on

Change default selected head to a more interesting one
fb742f5

aksell commited on

Tweak interesting heads view
18e02d3

aksell commited on

Add text and slice selection to head selection view
51f3451

aksell commited on

Rename app.py to Attention_Visualization.py
a9afebb

aksell commited on

First draft of "Find interesting heads" page
2410bbd

aksell commited on

Add table of top_n attention pairs
b7cb94d

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Make model selector more compact
1b13d7f

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Add sections to sidebar
b3a37f0

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Move attention parameters to sidebar
6bb6142

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Label top n attention pairs
4355c21

aksell commited on

Change default layer and tweak text
beb84f6

aksell commited on

Allow highlighting of residues
61419b7

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Allow selecting individual chains
58b87e3

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Plot avg attention not sum
3de389d

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Reduce attention cylinder size
97dc04c

aksell commited on

Acknowledge provis in the README
2baeea3

aksell commited on

Remove Prot-T5 and ProtGPT2
386fb31

aksell commited on

Link to provis as a source for the attention visualization
6002f51

aksell commited on

Changet test structure in get_structure
d1b48a1

aksell commited on

Clean up view
bf964bb

aksell commited on

Show EC class if using ZymCTRL and EC class is available in PDB
79ff34a

aksell commited on

Add PROT BERT
1c423ed

aksell commited on

Update requirements.txt from poetry
02840f4

aksell commited on

Link to RCSB structure
f60f302

aksell commited on

Hide min attention slider in expander
c621eec

aksell commited on

Split attention.py into attention.py and models.py
eb9ae1f

aksell commited on

Cache TAPE-BERT loading
e07549d

aksell commited on

Disable ProtGPT2
4a42326

aksell commited on

Add ProtGPT2 model
2338bb4

aksell commited on

Remove unused debuging code path
1431daf

aksell commited on

Update text and title
db81f50

aksell commited on