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hexviz

Commit History

Fix bug in plot of single head
703d569

aksell commited on

Open links to app in current iframe
48c14d0

aksell commited on

Don't remove special tokens in identify interesting heads
e13695f

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Add plot of single head
214c50a

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Test write shape of tensor
1804445

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Also validate sequences in second view
ca475ac

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Add ProtT5
852aa1f

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Remove docks from main page and list supported models
c663b1c

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Format with Black
a2cfd88

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Specify default theme
8cef26d

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Add documentation page
611049a

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Rename subpage to ensure correct ordering in sidebar
3c4fdda

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Don't zero pad residue IDs in top attention table
5166e2c

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Update description text
a789c1f

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Fix ProtBert tensors stored on different devices
d7eabb7

aksell commited on

Ignore FASTA headers in sequence input
6d2a9ed

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Cache prot bert tokenizer and model separately
dacbc43

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Remove print
695df3e

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Use gpu device for prot bert
2e9b6cc

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Don't hash tokenizer for ZymCTRL
b42d000

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Try to not use GPU device for ZymCTRL
daf1c3b

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Use right structure in select interesting heads
220f138

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Clear state using on_change
b868bfd

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Add PROT BERT
cab68af

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Store user sequence in cache
18c737e

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Use widget state for sequence slice slider
110826a

aksell commited on

Default to protein selector expander open
c2046b3

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Use widget state for chain, head, layer, step in plot view
f947509

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Use widget state for selected model
650204b

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Use widget state for selected chains
777e09c

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Make layer and head selection less buggy
0ae789a

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Clean and validate sequences
26717fa

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Try formatting tags as yaml list to see if they're caught
cfd6b27

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Explain why get_attention re-parses the pdb
4ff156e

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Use Python 3.10.5
2d77790

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Add tags to the space config
5563518

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Limit sequence input length to 400
920aa4b

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Default to protein selection panel being open
3d40087

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Expander with pdb code, file or sequence input
c8fb9e8

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WIP Add option to upload PDB files
5d3313d

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Option to toggle ligand showing
722bda7

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Hide ligands for hidden chains.
a48c45b

aksell commited on

Removed redundant ligand styling
5f136f2

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Zoom to selected chain if only 1 selected
4501102

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Also show non carbons in side chains
87df996

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Button to show sidechains for labeled resis
d222aaa

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Label residues with highest sum of attention not highest pairs
42ad7ef

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Store selected head and layer in attention visualization
599e725

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Check session state with .get
92ba471

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Store selected sequence slice
fd3cdd5

aksell commited on