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hexviz

Commit History

Default to white protein
c848ab7

Aksel Lenes commited on

Don't show spinner for frequently called func
0be0010

Aksel Lenes commited on

Add warning message about fixed_scale
090e359

Aksel Lenes commited on

Add fixed_scale parameter for grid plot view
909a82d

Aksel Lenes commited on

Mention third view in Docs
77c9ae7

aksell commited on

Remove todo section from docs
c6b3f25

aksell commited on

Explain the name Hexviz in the docs
85dcb9a

aksell commited on

Adjust label size with label count
c82ea4d

aksell commited on

Fix labeling bug
941854b

aksell commited on

Select what tokens to label in the heatmap
4a93494

aksell commited on

Bug: Label hidden tokens for ProtT5 too
cf8177e

aksell commited on

Remove leading underscore from ProtT5 token labels
3f05b29

aksell commited on

Fix typo
53fcb4a

aksell commited on

Fix link
964a311

aksell commited on

Rename birds eye view
463ea2b

aksell commited on

Reveres ZymCTRl number coordinates
7b3520a

aksell commited on

Link proteins, easier to compare.
23666b6

aksell commited on

Accept all protein inputs in birds eye view
40dd8f2

aksell commited on

Fix parsing of sequences and structures
1e5a96a

aksell commited on

Retry fetching structure
bc6cd4c

aksell commited on

Allow changing viewer width
739d26f

aksell commited on

Add options to label, highlight and show ligand
a2eb24d

aksell commited on

Reduce viewer width for huggingface spaces compatability
9af4b80

aksell commited on

Add test view of grid of attention on structure
ee057cd

aksell commited on

Set width and height in py3Dmol too
6fb3f0b

aksell commited on

Calculate pct of total attention
db42d48

aksell commited on

Fix bug in column vise attention calc
53a7dc6

aksell commited on

Calculate top residue using attention to residue
725c921

aksell commited on

Fix internal link between views
0a6b613

aksell commited on

Update documentation
cdcf3af

aksell commited on

Fix T5 bug with tokens returned
b65afcb

aksell commited on

Allow setting color
6d4dc1d

aksell commited on

Fix vmin and vmax in heatmaps
d35acfc

aksell commited on

Reword checkbox to hide attention to tokens
cea9292

aksell commited on

Fix removal of special tokens for ZymCTRL
2e81150

aksell commited on

Show EC number in single attention plot and add option to show special tokens
6d3f484

aksell commited on

Return sequence of tokens from get_attention
d3faba1

aksell commited on

Add ruff, run ruff and black
a71a737

aksell commited on

Fix links in documentation
7a18fac

aksell commited on

Fix residue indexing error
7c0cc4e

aksell commited on

Show chain in table of top residues
01ba5a1

aksell commited on

Don't add EC number chars to top residues
528cd6e

aksell commited on

Catch potential KeyError from chain
14646a1

aksell commited on

Visualize EC tags for multiple chains
b6e0c9a

aksell commited on

WIP visualize EC number and attention to it
9f086ee

aksell commited on

Remove unused attention pair values
f7e76de

aksell commited on

Fix links in documentation
b09c0bf

aksell commited on

Remove debug print
b5726b3

aksell commited on

Remove attention to special tokens in find interesting heads
491bdcd

aksell commited on

Fix reomval of special tokens for T5
1ce487e

aksell commited on