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pharm-relation-extraction
===
Model trained to recognize 4 types of relationships between significant pharmacological entities in russian-language reviews: ADR–Drugname, Drugname–Diseasename, Drugname–SourceInfoDrug, Diseasename–Indication. The input of the model is a review text and a pair of entities, between which it is required to determine the fact of a relationship and one of the 4 types of relationship, listed above.
Data
----
Proposed model is trained on a subset of 908 reviews of the [Russian Drug Review Corpus (RDRS)](https://arxiv.org/pdf/2105.00059.pdf). The subset contains the pairs of entities marked with the 4 listed types of relationships:
- ADR-Drugname — the relationship between the drug and its side effects
- Drugname-SourceInfodrug — the relationship between the medication and the source of information about it (e.g., “was advised at the pharmacy”, e.g., “was advised at the pharmacy”, “the doctor recommended it”);
- Drugname-Diseasname — the relationship between the drug and the disease
- Diseasename-Indication — the connection between the illness and its symptoms (e.g., “cough”, “fever 39 degrees”)
Also, this subset contains pairs of the same entity types between which there is no relationship: for example, a drug and an unrelated side effect that appeared after taking another drug; in other words, this side effect is related to another drug.
Model topology and training
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Proposed model is based on the [XLM-RoBERTA-large](https://arxiv.org/abs/1911.02116) topology. After the additional training as a language model on corpus of unmarked drug reviews, this model was trained as a classification model on 80% of the texts from subset of the corps described above.
How to use
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See section "How to use" in [our git repository for the model](https://github.com/sag111/Relation_Extraction)
Results
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Here are the accuracy, estimated by the f1 score metric for the recognition of relationships on the best fold.
| ADR–Drugname | Drugname–Diseasename | Drugname–SourceInfoDrug | Diseasename–Indication |
| ------------- | -------------------- | ----------------------- | ---------------------- |
| 0.955 | 0.892 | 0.922 | 0.891 |
Citation info
----
If you have found our results helpful in your work, feel free to cite our publication as:
```
@article{sboev2021extraction,
title={Extraction of the Relations between Significant Pharmacological Entities in Russian-Language Internet Reviews on Medications},
author={Sboev, Alexander and Selivanov, Anton and Moloshnikov, Ivan and Rybka, Roman and Gryaznov, Artem and Sboeva, Sanna and Rylkov, Gleb},
year={2021},
publisher={Preprints}
}
``` |