README.md

BioBERTpt - Portuguese Clinical and Biomedical BERT

The BioBERTpt - A Portuguese Neural Language Model for Clinical Named Entity Recognition paper contains clinical and biomedical BERT-based models for Portuguese Language, initialized with BERT-Multilingual-Cased & trained on clinical notes and biomedical literature.

This model card describes the BioBERTpt(all) model, a full version with clinical narratives and biomedical literature in Portuguese language.

How to use the model

Load the model via the transformers library:

from transformers import AutoTokenizer, AutoModel
tokenizer = AutoTokenizer.from_pretrained("pucpr/biobertpt-all")
model = AutoModel.from_pretrained("pucpr/biobertpt-all")

More Information

Refer to the original paper, BioBERTpt - A Portuguese Neural Language Model for Clinical Named Entity Recognition for additional details and performance on Portuguese NER tasks.

Questions?

Post a Github issue on the BioBERTpt repo.