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[paths]
train = "./data/spacy_format/train_med7_v34.spacy"
dev = "./data/spacy_format/dev_med7_v34.spacy"
vectors = "en_core_web_lg"
init_tok2vec = "/mnt/sdf/andrey/projects/med7_v3/output_pretrain_lg/model169.bin"
[system]
gpu_allocator = "pytorch"
seed = 0
[nlp]
lang = "en"
pipeline = ["transformer","ner"]
batch_size = 64
disabled = []
before_creation = null
after_creation = null
after_pipeline_creation = null
tokenizer = {"@tokenizers":"spacy.Tokenizer.v1"}
[components]
[components.ner]
factory = "ner"
incorrect_spans_key = null
moves = null
scorer = {"@scorers":"spacy.ner_scorer.v1"}
update_with_oracle_cut_size = 100
[components.ner.model]
@architectures = "spacy.TransitionBasedParser.v2"
state_type = "ner"
extra_state_tokens = false
hidden_width = 128
maxout_pieces = 2
use_upper = false
nO = null
[components.ner.model.tok2vec]
@architectures = "spacy-transformers.TransformerListener.v1"
grad_factor = 1.0
pooling = {"@layers":"reduce_mean.v1"}
upstream = "*"
[components.transformer]
factory = "transformer"
max_batch_items = 4096
set_extra_annotations = {"@annotation_setters":"spacy-transformers.null_annotation_setter.v1"}
[components.transformer.model]
@architectures = "spacy-transformers.TransformerModel.v3"
name = "/mnt/sdf/andrey/projects/med7_v3/RoBERTa-base-PM-M3-hf"
mixed_precision = false
[components.transformer.model.get_spans]
@span_getters = "spacy-transformers.strided_spans.v1"
window = 256
stride = 96
[components.transformer.model.grad_scaler_config]
[components.transformer.model.tokenizer_config]
use_fast = true
[components.transformer.model.transformer_config]
[corpora]
[corpora.dev]
@readers = "spacy.Corpus.v1"
path = ${paths.dev}
max_length = 0
gold_preproc = false
limit = 0
augmenter = null
[corpora.train]
@readers = "spacy.Corpus.v1"
path = ${paths.train}
max_length = 0
gold_preproc = false
limit = 0
augmenter = null
[training]
accumulate_gradient = 3
dev_corpus = "corpora.dev"
train_corpus = "corpora.train"
seed = ${system.seed}
gpu_allocator = ${system.gpu_allocator}
dropout = 0.1
patience = 3600
max_epochs = 0
max_steps = 20000
eval_frequency = 200
frozen_components = []
annotating_components = []
before_to_disk = null
[training.batcher]
@batchers = "spacy.batch_by_padded.v1"
discard_oversize = true
size = 1000
buffer = 256
get_length = null
[training.logger]
@loggers = "spacy.ConsoleLogger.v1"
progress_bar = true
[training.optimizer]
@optimizers = "Adam.v1"
beta1 = 0.9
beta2 = 0.999
L2_is_weight_decay = true
L2 = 0.01
grad_clip = 1.0
use_averages = false
eps = 0.00000001
[training.optimizer.learn_rate]
@schedules = "warmup_linear.v1"
warmup_steps = 250
total_steps = 20000
initial_rate = 0.00005
[training.score_weights]
ents_f = 1.0
ents_p = 0.0
ents_r = 0.0
ents_per_type = null
[pretraining]
[initialize]
vectors = ${paths.vectors}
init_tok2vec = ${paths.init_tok2vec}
vocab_data = null
before_init = null
after_init = null
[initialize.components]
[initialize.lookups]
@misc = "spacy.LookupsDataLoader.v1"
lang = ${nlp.lang}
tables = ["lexeme_norm"]
[initialize.tokenizer] |