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--- |
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tags: |
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- generated_from_trainer |
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datasets: |
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- ncbi_disease |
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metrics: |
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- precision |
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- recall |
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- f1 |
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- accuracy |
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model-index: |
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- name: biobert-base-cased-v1.2_ncbi_disease-softmax-labelall-ner |
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results: |
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- task: |
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name: Token Classification |
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type: token-classification |
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dataset: |
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name: ncbi_disease |
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type: ncbi_disease |
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args: ncbi_disease |
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metrics: |
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- name: Precision |
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type: precision |
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value: 0.8288508557457213 |
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- name: Recall |
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type: recall |
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value: 0.8614993646759848 |
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- name: F1 |
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type: f1 |
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value: 0.8448598130841122 |
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- name: Accuracy |
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type: accuracy |
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value: 0.9861487755016897 |
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--- |
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<!-- This model card has been generated automatically according to the information the Trainer had access to. You |
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should probably proofread and complete it, then remove this comment. --> |
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# biobert-base-cased-v1.2_ncbi_disease-softmax-labelall-ner |
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This model is a fine-tuned version of [dmis-lab/biobert-base-cased-v1.2](https://huggingface.co/dmis-lab/biobert-base-cased-v1.2) on the ncbi_disease dataset. |
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It achieves the following results on the evaluation set: |
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- Loss: 0.0629 |
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- Precision: 0.8289 |
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- Recall: 0.8615 |
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- F1: 0.8449 |
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- Accuracy: 0.9861 |
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## Model description |
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More information needed |
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## Intended uses & limitations |
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More information needed |
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## Training and evaluation data |
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More information needed |
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## Training procedure |
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### Training hyperparameters |
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The following hyperparameters were used during training: |
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- learning_rate: 2e-05 |
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- train_batch_size: 4 |
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- eval_batch_size: 4 |
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- seed: 42 |
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- optimizer: Adam with betas=(0.9,0.999) and epsilon=1e-08 |
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- lr_scheduler_type: linear |
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- lr_scheduler_warmup_ratio: 0.1 |
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- num_epochs: 3 |
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### Training results |
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| Training Loss | Epoch | Step | Validation Loss | Precision | Recall | F1 | Accuracy | |
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|:-------------:|:-----:|:----:|:---------------:|:---------:|:------:|:------:|:--------:| |
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| 0.0554 | 1.0 | 1359 | 0.0659 | 0.7814 | 0.8132 | 0.7970 | 0.9825 | |
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| 0.0297 | 2.0 | 2718 | 0.0445 | 0.8284 | 0.8895 | 0.8578 | 0.9876 | |
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| 0.0075 | 3.0 | 4077 | 0.0629 | 0.8289 | 0.8615 | 0.8449 | 0.9861 | |
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### Framework versions |
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- Transformers 4.18.0 |
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- Pytorch 1.10.2+cu102 |
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- Datasets 2.3.2 |
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- Tokenizers 0.12.1 |
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