metrics.py

import re
import string
import uuid
from abc import abstractmethod
from collections import Counter
from dataclasses import field
from typing import Any, Dict, Generator, List, Optional, Tuple

import evaluate
import numpy
import numpy as np
from scipy.stats import bootstrap

from .artifact import Artifact
from .dataclass import InternalField, OptionalField
from .logging_utils import get_logger
from .operator import (
    MultiStreamOperator,
    SingleStreamOperator,
    StreamingOperator,
    StreamInstanceOperator,
)
from .operators import CopyFields
from .random_utils import get_seed
from .stream import MultiStream, Stream
from .type_utils import isoftype

logger = get_logger()
# The default number of resamples used to estimate the confidence intervals
# global and instances metrics. Use None to disable confidence interval computation by default.
_N_RESAMPLES_DEFAULT_FOR_INSTANCE_METRICS = 1000
_N_RESAMPLES_DEFAULT_FOR_GLOBAL_METRICS = 100


def abstract_factory():
    return {}


def abstract_field():
    return field(default_factory=abstract_factory)


class UpdateStream(StreamInstanceOperator):
    update: dict

    def process(
        self, instance: Dict[str, Any], stream_name: Optional[str] = None
    ) -> Dict[str, Any]:
        instance.update(self.update)
        return instance


# TODO: currently we have two classes with this name. metric.Metric and matrics.Metric...
class Metric(Artifact):
    @property
    @abstractmethod
    def main_score(self):
        pass


class MetricWithConfidenceInterval(Metric):
    # The number of resamples used to estimate the confidence intervals of this metric.
    # Use None to disable confidence interval computation.
    n_resamples: int = None
    confidence_level: float = 0.95
    ci_scores: List[str] = None

    @staticmethod
    def new_random_generator():
        # The np.random.default_rng expects a 32-bit int, while hash(..) can return a 64-bit integer.
        # So use '& MAX_32BIT' to get a 32-bit seed.
        _max_32bit = 2**32 - 1
        return np.random.default_rng(hash(get_seed()) & _max_32bit)

    def disable_confidence_interval_calculation(self):
        self.n_resamples = None

    def _can_compute_confidence_intervals(self, num_predictions):
        return (
            self.n_resamples is not None
            and self.n_resamples > 1
            and num_predictions > 1
        )

    def score_based_confidence_interval(self, instances):
        """Compute confidence intervals based on existing scores, already computed on the input instances.

        score_names: List[str]
            Compute a confidence interval for each score_name from this list.
        instances:
            The instances for which the confidence intervals are computed.
        """
        from statistics import mean

        result = {}

        if not self._can_compute_confidence_intervals(num_predictions=len(instances)):
            return result

        score_names = (
            self.ci_scores if self.ci_scores is not None else [self.main_score]
        )

        for score_name in score_names:
            scores = [
                instance["score"]["instance"][score_name] for instance in instances
            ]
            ci = bootstrap(
                (scores,),
                statistic=mean,
                n_resamples=self.n_resamples,
                confidence_level=self.confidence_level,
                random_state=self.new_random_generator(),
            ).confidence_interval
            result[f"{score_name}_ci_low"] = ci.low
            result[f"{score_name}_ci_high"] = ci.high
            if score_name == self.main_score:
                result["score_ci_low"] = ci.low
                result["score_ci_high"] = ci.high
        return result

    def compute_global_confidence_intervals(
        self, references, predictions, additional_inputs, score_name
    ):
        """Computed confidence intervals for a set of references and predictions."""
        random_gen = self.new_random_generator()

        def statistic(arr, axis):
            # arr is a 2d array where each row is a resampling, so we
            # iterate over the rows and compute the metric on each resampling
            def metric(sample_refs, sample_preds, sample_additional_inputs):
                try:
                    return self._compute(
                        references=sample_refs,
                        predictions=sample_preds,
                        additional_inputs=sample_additional_inputs,
                    )["score"]
                except Exception as e:
                    # this happens in edge cases, for example, when the sampling creates a
                    # sample where all strings are empty and this fails bleu.
                    logger.info(f"Warning in {self.__class__.__name__}", e)
                    return np.nan

            scores = numpy.apply_along_axis(
                lambda x: metric(
                    sample_refs=[references[i] for i in x],
                    sample_preds=[predictions[i] for i in x],
                    sample_additional_inputs=[additional_inputs[i] for i in x],
                ),
                axis=axis,
                arr=arr,
            )

            # when running with bca interval (default), the statistic is called twice: with the
            # original data and with the resamples. here we want to focus only on the latter.
            if scores.size > 1:
                # here we deal with samples on which the metric could not be computed. These are
                # edge cases - for example, when the sample contains only empty strings.
                # CI is about the distribution around the statistic (e.g. mean), it doesn't deal with
                # cases in which the metric is not computable. Therefore, we ignore these edge cases
                # as part of the computation of CI. The question is how to implement this policy.
                # Options:
                # 1. skip the errors and return a shorter array => this fails because Scipy demans
                # this callback (i.e. the statistic() callback) to return an array of the same size
                # as the number of resamples
                # 2. Put np.nan for the errors => this fails because in such case the ci itself
                # becomes np.nan. So one edge case can fail the whole CI computation.
                # 3. Replace the errors with a sampling from the successful cases => this is what
                # is implemented.
                error_indices = numpy.isnan(scores)
                n_errors = sum(error_indices)
                if n_errors > 0:
                    new_scores = random_gen.choice(scores, n_errors, replace=True)
                    scores = scores[~error_indices]
                    scores = np.concatenate([scores, new_scores])

            return scores

        result = {}
        num_predictions = len(predictions)
        if self._can_compute_confidence_intervals(num_predictions=num_predictions):
            identifiers = list(range(num_predictions))
            ci = bootstrap(
                (identifiers,),
                statistic=statistic,
                n_resamples=self.n_resamples,
                confidence_level=self.confidence_level,
                random_state=random_gen,
            ).confidence_interval
            result["score_ci_low"] = ci.low
            result["score_ci_high"] = ci.high
            result[f"{score_name}_ci_low"] = ci.low
            result[f"{score_name}_ci_high"] = ci.high
        return result


class GlobalMetric(SingleStreamOperator, MetricWithConfidenceInterval):
    """A class for computing metrics that require joint calculations over all instances and are not just aggregation of scores of individuals instances.

    For example, macro_F1 requires
    calculation requires calculation of recall and precision per class, so all instances of the class
    need to be considered.  Accuracy, on the other hand, is just an average of the accuracy of all the instances.
    """

    n_resamples = _N_RESAMPLES_DEFAULT_FOR_GLOBAL_METRICS

    def process(self, stream: Stream, stream_name: Optional[str] = None) -> Generator:
        references = []
        predictions = []
        additional_inputs = []
        global_score = {}

        instances = []

        for instance in stream:
            if "score" not in instance:
                instance["score"] = {"global": global_score, "instance": {}}
            else:
                global_score = instance["score"]["global"]

            instance_references, instance_prediction = (
                instance["references"],
                instance["prediction"],
            )
            references.append(instance_references)
            predictions.append(instance_prediction)
            instances.append(instance)

            instance_additional_inputs = (
                instance["additional_inputs"] if "additional_inputs" in instance else {}
            )
            additional_inputs.append(instance_additional_inputs)
            try:
                instance_score = self._compute(
                    [instance_references],
                    [instance_prediction],
                    [instance_additional_inputs],
                )
            except:
                instance_score = {"score": None, "score_name": self.main_score}

                if isinstance(self.main_score, str):
                    instance_score[self.main_score] = None

            instance["score"]["instance"].update(instance_score)

        result = self._compute(references, predictions, additional_inputs)

        global_score.update(result)

        score_name = global_score["score_name"]
        confidence_interval = self.compute_global_confidence_intervals(
            references, predictions, additional_inputs, score_name
        )
        global_score.update(confidence_interval)

        for instance in instances:
            instance["score"]["global"] = global_score
            yield instance

    def _compute(
        self,
        references: List[List[str]],
        predictions: List[str],
        additional_inputs: List[Any],
    ) -> dict:
        result = self.compute(references, predictions, additional_inputs)
        result["score"] = result[self.main_score]
        result["score_name"] = self.main_score
        return result

    @abstractmethod
    def compute(
        self,
        references: List[List[Any]],
        predictions: List[Any],
        additional_inputs: List[Any],
    ) -> dict:
        pass


class BulkInstanceMetric(SingleStreamOperator, MetricWithConfidenceInterval):
    n_resamples = _N_RESAMPLES_DEFAULT_FOR_INSTANCE_METRICS
    main_score: str
    reduction_map: Dict[str, List[str]]

    implemented_reductions: List[str] = field(default_factory=lambda: ["mean"])

    def process(self, stream: Stream, stream_name: Optional[str] = None) -> Generator:
        global_score = {}
        instances = []

        # consume the stream
        references, predictions = map(
            list,
            zip(
                *[
                    (instance["references"], instance["prediction"])
                    for instance in stream
                ]
            ),
        )

        additional_inputs = [
            instance["additional_inputs"] if "additional_inputs" in instance else {}
            for instance in stream
        ]

        # compute the metric over all refs and preds
        instance_scores = self.compute(
            references=references,
            predictions=predictions,
            additional_inputs=additional_inputs,
        )

        # add the score and score_name fields
        for instance_score in instance_scores:
            instance_score["score"] = instance_score[self.main_score]
            instance_score["score_name"] = self.main_score

        for instance, score in zip(stream, instance_scores):
            if "score" not in instance:
                instance["score"] = {"global": global_score, "instance": {}}
            else:
                global_score = instance["score"]["global"]

            instance["score"]["instance"].update(score)

            instances.append(instance)

        for reduction, fields in self.reduction_map.items():
            assert (
                reduction in self.implemented_reductions
            ), f"Reduction {reduction} is not implemented, use one of {self.implemented_reductions}"

            if reduction == "mean":
                from statistics import mean

                for field_name in fields:
                    global_score[field_name] = mean(
                        [
                            instance["score"]["instance"][field_name]
                            for instance in instances
                        ]
                    )
                    if field_name == self.main_score:
                        global_score["score"] = global_score[field_name]
                        global_score["score_name"] = self.main_score

                confidence_interval = self.score_based_confidence_interval(
                    instances=instances
                )
                global_score.update(confidence_interval)

        for instance in instances:
            yield instance

    @abstractmethod
    def compute(
        self,
        references: List[List[Any]],
        predictions: List[Any],
        additional_inputs: List[Dict],
    ) -> Dict[str, Any]:
        pass


class InstanceMetric(SingleStreamOperator, MetricWithConfidenceInterval):
    n_resamples = _N_RESAMPLES_DEFAULT_FOR_INSTANCE_METRICS

    implemented_reductions: List[str] = field(default_factory=lambda: ["mean"])

    @property
    @abstractmethod
    def reduction_map(self) -> dict:
        pass

    def process(self, stream: Stream, stream_name: Optional[str] = None) -> Generator:
        global_score = {}
        instances = []

        for instance in stream:
            refs, pred = instance["references"], instance["prediction"]
            additional_inputs = (
                instance["additional_inputs"] if "additional_inputs" in instance else {}
            )

            instance_score = self.compute(
                references=refs, prediction=pred, additional_inputs=additional_inputs
            )
            instance_score["score"] = instance_score[self.main_score]
            instance_score["score_name"] = self.main_score
            if "score" not in instance:
                instance["score"] = {"global": global_score, "instance": {}}
            else:
                global_score = instance["score"]["global"]

            instance["score"]["instance"].update(instance_score)

            instances.append(instance)

        for reduction, fields in self.reduction_map.items():
            assert (
                reduction in self.implemented_reductions
            ), f"Reduction {reduction} is not implemented, use one of {self.implemented_reductions}"

            if reduction == "mean":
                from statistics import mean

                for field_name in fields:
                    scores = [
                        instance["score"]["instance"][field_name]
                        for instance in instances
                    ]
                    global_score[field_name] = mean(scores)
                    if field_name == self.main_score:
                        global_score["score"] = global_score[field_name]
                        global_score["score_name"] = self.main_score

                confidence_interval = self.score_based_confidence_interval(
                    instances=instances
                )
                global_score.update(confidence_interval)

        for instance in instances:
            yield instance

    @abstractmethod
    def compute(
        self, references: List[Any], prediction: Any, additional_inputs: Dict
    ) -> dict:
        pass


class Squad(GlobalMetric):
    _metric = None
    main_score = "f1"
    metric = "squad"

    def prepare(self):
        super().prepare()
        self._metric = evaluate.load(self.metric)

    def compute(
        self,
        references: List[List[str]],
        predictions: List[str],
        additional_inputs: List[Dict],
    ) -> dict:
        ids = [str(uuid.uuid4()).replace("-", "") for _ in range(len(predictions))]
        formatted_predictions = [
            {"prediction_text": prediction, "id": ids[i]}
            for i, prediction in enumerate(predictions)
        ]
        formatted_references = [
            {"answers": {"answer_start": [-1], "text": reference}, "id": ids[i]}
            for i, reference in enumerate(references)
        ]

        return self._metric.compute(
            predictions=formatted_predictions,
            references=formatted_references,
        )


class Accuracy(InstanceMetric):
    reduction_map = {"mean": ["accuracy"]}
    main_score = "accuracy"

    def compute(
        self, references: List[Any], prediction: Any, additional_inputs: List[Dict]
    ) -> dict:
        result = {
            self.main_score: float(
                str(prediction) in [str(reference) for reference in references]
            )
        }
        result["score"] = result[self.main_score]
        result["score_name"] = self.main_score
        return result


class StringContainment(InstanceMetric):
    reduction_map = {"mean": ["string_containment"]}
    main_score = "string_containment"

    def compute(
        self, references: List[Any], prediction: Any, additional_inputs: List[Dict]
    ) -> dict:
        result = {
            self.main_score: float(
                any(str(reference) in prediction for reference in references)
            )
        }
        result["score"] = result[self.main_score]
        result["score_name"] = self.main_score
        return result


class MetricPipeline(MultiStreamOperator, Metric):
    main_score: str = None
    preprocess_steps: Optional[List[StreamingOperator]] = field(default_factory=list)
    postpreprocess_steps: Optional[List[StreamingOperator]] = field(
        default_factory=list
    )
    metric: Metric = None

    def verify(self):
        assert self.main_score is not None, "main_score is not set"

    def prepare(self):
        super().prepare()
        self.prepare_score = CopyFields(
            field_to_field=[
                [f"score/instance/{self.main_score}", "score/instance/score"],
                [f"score/global/{self.main_score}", "score/global/score"],
            ],
            use_query=True,
        )

    def process(self, multi_stream: MultiStream) -> MultiStream:
        for step in self.preprocess_steps:
            multi_stream = step(multi_stream)
        multi_stream = self.metric(multi_stream)
        for step in self.postpreprocess_steps:
            multi_stream = step(multi_stream)
        return self.prepare_score(multi_stream)


class HuggingfaceMetric(GlobalMetric):
    hf_metric_name: str = None
    main_score: str = None  # The main score returned from the metric
    hf_main_score: str = (
        None  # USed if HF returns uses a different score name for the main metric
    )

    scale: float = 1.0  # optional scaling of main results
    scaled_fields: list = None
    # This are fixed arguments  passed to compute method
    hf_compute_args: Dict[str, Any] = OptionalField(default_factory=dict)
    # These are additional input fields passed to HF compute method (a list with one value per instance)
    hf_additional_input_fields: List = OptionalField(default_factory=list)
    # These are additional input fields that are passed as one value
    hf_additional_input_fields_pass_one_value: List = OptionalField(
        default_factory=list
    )

    experiment_id: str = OptionalField(default_factory=lambda: str(uuid.uuid4()))

    def verify(self):
        assert (
            self.hf_additional_input_fields is None
            or isoftype(self.hf_additional_input_fields, List[str])
        ), f"Argument hf_additional_input_fields should be either None or List[str]. It is now: {self.hf_additional_input_fields}."
        assert (
            self.hf_additional_input_fields_pass_one_value is None
            or isoftype(self.hf_additional_input_fields_pass_one_value, List[str])
        ), f"Argument hf_additional_input_fields_pass_one_value should be either None or List[str]. It is now: {self.hf_additional_input_fields_pass_one_value}."

        return super().verify()

    def prepare(self):
        super().prepare()
        self.metric = evaluate.load(
            self.hf_metric_name, experiment_id=self.experiment_id
        )

    def compute(
        self,
        references: List[List[Any]],
        predictions: List[Any],
        additional_inputs: List[Dict],
    ) -> dict:
        passed_additional_inputs = {}
        for additional_input_field in self.hf_additional_input_fields:
            assert (
                additional_input_field in additional_inputs[0]
            ), f"'{additional_input_field}' field required by {__class__.__name__} is not in passed in additional inputs: {additional_inputs[0]}"
            passed_additional_inputs[additional_input_field] = [
                additional_input[additional_input_field]
                for additional_input in additional_inputs
            ]
        for additional_input_field in self.hf_additional_input_fields_pass_one_value:
            assert (
                additional_input_field in additional_inputs[0]
            ), f"'{additional_input_field}' field required by {__class__.__name__} is not in passed in additional inputs: {additional_inputs[0]}"

            values = {
                additional_input[additional_input_field]
                for additional_input in additional_inputs
            }
            assert (
                len(values) == 1
            ), f"Values of '{additional_input_field}' field required by {__class__.__name__}  should all be the same, but have multiple values {values}"

            passed_additional_inputs[additional_input_field] = next(iter(values))

        # add check that all required fields in self.metrics are in passed_additional_inputs       print(passed_additional_inputs)
        result = self.metric.compute(
            predictions=predictions,
            references=references,
            **passed_additional_inputs,
            **self.hf_compute_args,
        )
        if self.hf_main_score:
            result[self.main_score] = result[self.hf_main_score]
            del result[self.hf_main_score]
        if self.scale != 1.0:
            assert (
                self.scaled_fields is not None
            ), f"Scaling factor was set to {self.scale}, but no fields specified"
            for key in self.scaled_fields:
                assert (
                    key in result
                ), f"Trying to scale field '{key}' which is not in results of metrics: {result}"
                if isinstance(result[key], list):
                    assert all(
                        isinstance(v, float) for v in result[key]
                    ), "Not all scaled field '{key}' values are floats: {result[key]}"
                    result[key] = [v / self.scale for v in result[key]]
                else:
                    assert isinstance(
                        result[key], float
                    ), "Scaled field '{key}' is not float: {result[key]}"
                    result[key] /= self.scale
        return result


class HuggingfaceBulkMetric(BulkInstanceMetric):
    hf_metric_name: str

    hf_metric_fields: List[str]
    hf_compute_args: dict = {}
    hf_additional_input_fields: List = OptionalField(default_factory=list)

    def prepare(self):
        super().prepare()
        self.metric = evaluate.load(self.hf_metric_name)

    def compute(
        self,
        references: List[List[str]],
        predictions: List[str],
        additional_inputs: List[Any],
    ) -> List[Dict[str, Any]]:
        passed_additional_inputs = {}
        passed_additional_inputs = {}
        for additional_input_field in self.hf_additional_input_fields:
            assert (
                additional_input_field in additional_inputs[0]
            ), f"'{additional_input_field}' field required by {__class__.__name__} is not in passed in additional inputs: {additional_inputs[0]}"
            passed_additional_inputs[additional_input_field] = [
                additional_input[additional_input_field]
                for additional_input in additional_inputs
            ]
        # add check that all required fields in self.metrics are in passed_additional_inputs

        scores = self.metric.compute(
            predictions=predictions,
            references=references,
            **passed_additional_inputs,
            **self.hf_compute_args,
        )

        # convert dict of lists to a list of dicts
        results = [{} for _ in range(len(scores[self.hf_metric_fields[0]]))]
        for key in self.hf_metric_fields:
            values = scores[key]
            for result_id, result in enumerate(results):
                result[key] = values[result_id]

        return results


class F1(GlobalMetric):
    _metric = None
    main_score = "f1_macro"
    average = None  # Report per class then aggregate by mean
    metric = "f1"

    def prepare(self):
        super().prepare()
        self._metric = evaluate.load(self.metric)

    def get_str_id(self, str):
        if str not in self.str_to_id:
            id = len(self.str_to_id)
            self.str_to_id[str] = id
            self.id_to_str[id] = str
        return self.str_to_id[str]

    def compute(
        self,
        references: List[List[str]],
        predictions: List[str],
        additional_inputs: List[Dict],
    ) -> dict:
        assert all(
            len(reference) == 1 for reference in references
        ), "Only a single reference per prediction is allowed in F1 metric"
        self.str_to_id = {}
        self.id_to_str = {}
        formatted_references = [
            self.get_str_id(reference[0]) for reference in references
        ]
        self.str_to_id.keys()
        formatted_predictions = [
            self.get_str_id(prediction) for prediction in predictions
        ]
        labels = list(set(formatted_references))
        result = self._metric.compute(
            predictions=formatted_predictions,
            references=formatted_references,
            labels=labels,
            average=self.average,
        )
        if isinstance(result["f1"], numpy.ndarray):
            from statistics import mean

            final_result = {self.main_score: mean(result["f1"])}
            for i, label in enumerate(labels):
                final_result["f1_" + self.id_to_str[label]] = result["f1"][i]
        else:
            final_result = {self.main_score: result["f1"]}
        return final_result


class F1Micro(F1):
    main_score = "f1_micro"
    average = "micro"


class F1Macro(F1):
    main_score = "f1_macro"


class F1Weighted(F1):
    main_score = "f1_weighted"
    average = "weighted"


class F1MultiLabel(GlobalMetric):
    _metric = None
    main_score = "f1_macro"
    average = None  # Report per class then aggregate by mean
    classes_to_ignore = ["none"]
    metric = "f1"

    def prepare(self):
        super().prepare()
        self._metric = evaluate.load(self.metric, "multilabel")

    def add_str_to_id(self, str):
        if str not in self.str_to_id:
            id = len(self.str_to_id)
            self.str_to_id[str] = id
            self.id_to_str[id] = str
        return

    def get_one_hot_vector(self, labels: List[str]):
        result = [0] * len(self.str_to_id)
        for label in labels:
            if label in self.str_to_id:
                result[self.str_to_id[label]] = 1
        return result

    def compute(
        self,
        references: List[List[str]],
        predictions: List[List[str]],
        additional_inputs: List[Dict],
    ) -> dict:
        self.str_to_id = {}
        self.id_to_str = {}

        self._validate_references_and_prediction(references, predictions)
        references = [reference[0] for reference in references]

        labels = [
            lbl
            for lbl in {label for reference in references for label in reference}
            if lbl not in self.classes_to_ignore
        ]
        # if no classes are left then F1 is not defined
        # (e.g. only "none" in references)
        if len(labels) == 0:
            return {self.main_score: float("nan")}

        for label in labels:
            self.add_str_to_id(label)
        formatted_references = [
            self.get_one_hot_vector(reference) for reference in references
        ]
        formatted_predictions = [
            self.get_one_hot_vector(prediction) for prediction in predictions
        ]

        # There is odd behavior in scikit-learn that when passing a one-hot vector with a single
        # element, it is treated a class identifier. Therefore, we add labels=[1] to limit to only
        # to this class.
        if len(labels) == 1:
            labels_param = [1]
        else:
            labels_param = None

        result = self._metric.compute(
            predictions=formatted_predictions,
            references=formatted_references,
            average=self.average,
            labels=labels_param,
        )
        if isinstance(result[self.metric], numpy.ndarray):
            from statistics import mean

            assert (
                len(result[self.metric]) == len(labels)
            ), f"F1 result ({result[self.metric]}) has more entries than labels ({labels})"
            final_result = {self.main_score: mean(result[self.metric])}
            for i, label in enumerate(labels):
                final_result[self.metric + "_" + label] = result[self.metric][i]
        else:
            final_result = {self.main_score: result[self.metric]}
        return final_result

    def _validate_references_and_prediction(self, references, predictions):
        for reference in references:
            if not len(reference) == 1:
                raise ValueError(
                    f"Only a single reference per prediction is allowed in F1 multi label metric. Received reference: {reference}"
                )
            if not isoftype(reference[0], List[str]):
                raise ValueError(
                    f"Each reference is expected to be a list of strings in F1 multi label metric. Received reference: '{reference[0]}'"
                )

        for prediction in predictions:
            if not isoftype(prediction, List[str]):
                raise ValueError(
                    f"Each prediction is expected to be a list of strings in F1 multi label metric. Received prediction: '{prediction}'"
                )


class PrecisionMacroMultiLabel(F1MultiLabel):
    main_score = "precision_macro"
    metric = "precision"
    average = "macro"


class PrecisionMicroMultiLabel(F1MultiLabel):
    main_score = "precision_micro"
    metric = "precision"
    average = "micro"


class RecallMacroMultiLabel(F1MultiLabel):
    main_score = "recall_macro"
    metric = "recall"
    average = "macro"


class RecallMicroMultiLabel(F1MultiLabel):
    main_score = "recall_micro"
    metric = "recall"
    average = "micro"


class F1MicroMultiLabel(F1MultiLabel):
    main_score = "f1_micro"
    average = "micro"


class F1MacroMultiLabel(F1MultiLabel):
    main_score = "f1_macro"
    average = None


class Rouge(HuggingfaceMetric):
    hf_metric_name = "rouge"
    main_score = "rougeL"
    scale = 1.0

    use_aggregator: bool = True
    rouge_types: List[str] = ["rouge1", "rouge2", "rougeL", "rougeLsum"]

    sent_split_newline: bool = True

    def prepare(self):
        super().prepare()

        self.hf_compute_args.update(
            {"use_aggregator": self.use_aggregator, "rouge_types": self.rouge_types}
        )

        import nltk

        nltk.download("punkt")
        self.sent_tokenize = nltk.sent_tokenize

    def compute(self, references, predictions, additional_inputs: List[Dict]):
        if self.sent_split_newline:
            predictions = [
                "\n".join(self.sent_tokenize(prediction.strip()))
                for prediction in predictions
            ]
            references = [
                ["\n".join(self.sent_tokenize(r.strip())) for r in reference]
                for reference in references
            ]
        return super().compute(references, predictions, additional_inputs)


# Computes char edit distance, ignoring whitespace
class CharEditDistanceAccuracy(InstanceMetric):
    reduction_map = {"mean": ["char_edit_dist_accuracy"]}
    main_score = "char_edit_dist_accuracy"

    def prepare(self):
        super().prepare()
        import editdistance

        self.eval = editdistance.eval

    def compute(
        self, references, prediction: str, additional_inputs: List[Dict]
    ) -> dict:
        assert (
            len(references) == 1
        ), f"Expected only one reference , but received: {references}"

        formatted_prediction = "".join(prediction.split())
        formatted_reference = "".join(references[0].split())
        max_length = max(len(formatted_reference), len(formatted_prediction))
        if max_length == 0:
            return {"char_edit_dist_accuracy": 0.0}
        edit_dist = self.eval(formatted_reference, formatted_prediction)
        return {"char_edit_dist_accuracy": (1 - edit_dist / max_length)}


class Wer(HuggingfaceMetric):
    hf_metric_name = "wer"
    main_score = "wer"

    def compute(
        self,
        references: List[List[str]],
        predictions: List[str],
        additional_inputs: List[Dict],
    ) -> dict:
        assert all(
            len(reference) == 1 for reference in references
        ), "Only single reference per prediction is allowed in wer metric"
        formatted_references = [reference[0] for reference in references]
        result = self.metric.compute(
            predictions=predictions, references=formatted_references
        )
        return {self.main_score: result}


class MatthewsCorrelation(HuggingfaceMetric):
    hf_metric_name = "matthews_correlation"
    main_score = "matthews_correlation"
    str_to_id: dict = InternalField(default_factory=dict)

    def get_str_id(self, str):
        if str not in self.str_to_id:
            id = len(self.str_to_id)
            self.str_to_id[str] = id
        return self.str_to_id[str]

    def compute(
        self,
        references: List[List[str]],
        predictions: List[str],
        additional_inputs: List[Dict],
    ) -> dict:
        formatted_references = [
            self.get_str_id(reference[0]) for reference in references
        ]
        formatted_predictions = [
            self.get_str_id(prediction) for prediction in predictions
        ]
        return self.metric.compute(
            predictions=formatted_predictions, references=formatted_references
        )


class CustomF1(GlobalMetric):
    main_score = "f1_micro"
    groups = None
    zero_division = 0.0

    @abstractmethod
    def get_element_group(self, element, additional_input):
        pass

    @abstractmethod
    def get_element_representation(self, element, additional_input):
        pass

    def should_ignore_element(self, element, additional_input):
        return False

    def group_elements(self, elements_list, additional_input):
        if not isinstance(elements_list, list):
            elements_list = [elements_list]
        return {
            k: Counter(
                [
                    self.get_element_representation(value, additional_input)
                    for value in elements_list
                    if self.get_element_group(value, additional_input) == k
                ]
            )
            for k in {
                self.get_element_group(e, additional_input)
                for e in elements_list
                if not self.should_ignore_element(e, additional_input)
            }
        }

    def calculate_groups_ratio(self, actual_group, total_group):
        return sum(
            [min(actual_group[k], total_group[k]) for k in actual_group.keys()]
        ), sum(actual_group.values())

    def precision(self, pn, pd, rn, rd):
        return self.zero_division if pn == 0 and pd == 0 else pn / pd

    def recall(self, pn, pd, rn, rd):
        return self.zero_division if rn == 0 and rd == 0 else rn / rd

    def f1(self, pn, pd, rn, rd):
        precision = self.precision(pn, pd, rn, rd)
        recall = self.recall(pn, pd, rn, rd)
        try:
            return 2 * precision * recall / (precision + recall)
        except ZeroDivisionError:
            return self.zero_division

    def get_groups(self, elements, additional_inputs):
        groups = set()
        for sublist, additional_input in zip(elements, additional_inputs):
            for e in sublist:
                if self.should_ignore_element(e, additional_input):
                    continue
                groups.add(self.get_element_group(e, additional_input))
        return groups

    def compute(
        self,
        references: List[List[Any]],
        predictions: List[Any],
        additional_inputs: List[Dict],
    ) -> dict:
        # in case reference are List[List[List[Any]]] and predictions are List[List[Any]]:
        if (
            isinstance(references[0], list)
            and len(references[0]) > 0
            and isinstance(references[0][0], list)
        ):
            references = [element[0] for element in references]

        assert len(references) == len(predictions), (
            f"references size ({len(references)})"
            f" doesn't mach predictions sise ({len(references)})."
        )

        if self.groups is None:
            groups = self.get_groups(references, additional_inputs)
        else:
            groups = self.groups
        groups_statistics = {}
        for references_batch, predictions_batch, additional_input in zip(
            references, predictions, additional_inputs
        ):
            grouped_references = self.group_elements(references_batch, additional_input)
            grouped_predictions = self.group_elements(
                predictions_batch, additional_input
            )
            all_groups = set(grouped_references.keys()).union(
                grouped_predictions.keys()
            )
            for group in all_groups:
                if group not in groups_statistics:
                    groups_statistics[group] = {
                        "precision_numerator": 0,
                        "precision_denominator": 0,
                        "recall_numerator": 0,
                        "recall_denominator": 0,
                    }
                references_by_group = grouped_references.get(group, Counter([]))
                predictions_by_group = grouped_predictions.get(group, Counter([]))
                pn, pd = self.calculate_groups_ratio(
                    actual_group=predictions_by_group, total_group=references_by_group
                )
                rn, rd = self.calculate_groups_ratio(
                    actual_group=references_by_group, total_group=predictions_by_group
                )
                groups_statistics[group]["precision_numerator"] += pn
                groups_statistics[group]["precision_denominator"] += pd
                groups_statistics[group]["recall_numerator"] += rn
                groups_statistics[group]["recall_denominator"] += rd

        num_of_unknown_class_predictions = 0
        pn_total = pd_total = rn_total = rd_total = 0
        f1_result = {}
        recall_result = {}
        precision_result = {}
        for group in groups_statistics.keys():
            pn, pd, rn, rd = (
                groups_statistics[group]["precision_numerator"],
                groups_statistics[group]["precision_denominator"],
                groups_statistics[group]["recall_numerator"],
                groups_statistics[group]["recall_denominator"],
            )
            pn_total, pd_total, rn_total, rd_total = (
                pn_total + pn,
                pd_total + pd,
                rn_total + rn,
                rd_total + rd,
            )
            if group in groups:
                f1_result[f"f1_{group}"] = self.f1(pn, pd, rn, rd)
                recall_result[f"recall_{group}"] = self.recall(pn, pd, rn, rd)
                precision_result[f"precision_{group}"] = self.precision(pn, pd, rn, rd)
            else:
                num_of_unknown_class_predictions += pd

        result = f1_result
        try:
            result["f1_macro"] = sum(f1_result.values()) / len(result.keys())
            result["recall_macro"] = sum(recall_result.values()) / len(
                recall_result.keys()
            )
            result["precision_macro"] = sum(precision_result.values()) / len(
                precision_result.keys()
            )
        except ZeroDivisionError:
            result["f1_macro"] = self.zero_division
            result["recall_macro"] = self.zero_division
            result["precision_macro"] = self.zero_division

        amount_of_predictions = pd_total
        if amount_of_predictions == 0:
            result["in_classes_support"] = 1.0
        else:
            result["in_classes_support"] = (
                1.0 - num_of_unknown_class_predictions / amount_of_predictions
            )
        result["f1_micro"] = self.f1(pn_total, pd_total, rn_total, rd_total)
        result["recall_micro"] = self.recall(pn_total, pd_total, rn_total, rd_total)
        result["precision_micro"] = self.precision(
            pn_total, pd_total, rn_total, rd_total
        )
        return result


class NER(CustomF1):
    def get_element_group(self, element, additional_input):
        return element[1]

    def get_element_representation(self, element, additional_input):
        return str(element)


def normalize_answer(s):
    """Lower text and remove punctuation, articles and extra whitespace."""

    def remove_articles(text):
        return re.sub(r"\b(a|an|the)\b", " ", text)

    def white_space_fix(text):
        return " ".join(text.split())

    def remove_punc(text):
        exclude = set(string.punctuation)
        return "".join(ch for ch in text if ch not in exclude)

    def lower(text):
        return text.lower()

    return white_space_fix(remove_articles(remove_punc(lower(s))))


class TokenOverlap(InstanceMetric):
    reduction_map = {"mean": ["f1", "precision", "recall"]}
    main_score = "f1"
    ci_scores = ["f1", "precision", "recall"]

    def compute(
        self, references: List[Any], prediction: Any, additional_inputs: List[Dict]
    ) -> dict:
        results = [
            self._compute_single_ref(reference, prediction) for reference in references
        ]
        return {
            measure: max(r[i] for r in results)
            for i, measure in enumerate(["precision", "recall", "f1"])
        }

    def _compute_single_ref(
        self, reference: Any, prediction: Any
    ) -> Tuple[float, float, float]:
        prediction_tokens = normalize_answer(prediction).split()
        reference_tokens = normalize_answer(reference).split()
        common = Counter(prediction_tokens) & Counter(reference_tokens)
        num_same = sum(common.values())
        if num_same == 0:
            pr, rc, f1 = 0, 0, 0
        else:
            pr = 1.0 * num_same / len(prediction_tokens)
            rc = 1.0 * num_same / len(reference_tokens)
            f1 = (2 * pr * rc) / (pr + rc)
        return pr, rc, f1


class BertScore(HuggingfaceBulkMetric):
    hf_metric_name = "bertscore"
    main_score = "f1"
    reduction_map = {"mean": ["f1", "precision", "recall"]}
    hf_metric_fields = ["f1", "precision", "recall"]
    ci_scores = ["f1", "precision", "recall"]
    model_name: str

    def prepare(self):
        super().prepare()
        self.hf_compute_args = {"model_type": self.model_name}


class SentenceBert(BulkInstanceMetric):
    reduction_map = {"mean": ["score"]}
    main_score = "score"
    batch_size: int = 32

    model_name: str

    def prepare(self):
        super().prepare()
        from sentence_transformers import SentenceTransformer
        from sentence_transformers import util as sbert_util

        self.model = SentenceTransformer(self.model_name)
        self.util = sbert_util

    def compute(
        self,
        references: List[List[Any]],
        predictions: List[Any],
        additional_inputs: List[Dict],
    ) -> List[Any]:
        scores = []

        # we are in a multi-reference case (each prediction may have multiple
        # references), so we need to flatten the refs in order to compute the
        # embeddings in one batch, but first we have to store the spans of
        # reference groups, so we can recover it later on.
        ref_group_boundaries = []
        count = 0
        for ref_group in references:
            ref_group_boundaries.append((count, count + len(ref_group)))
            count += len(ref_group)

        # compute s-bert embeddings
        preds_emb = self.model.encode(predictions)
        refs_emb = self.model.encode(
            [ref for ref_group in references for ref in ref_group]
        )

        # for each candidate, pick the reference with the highest score
        for pred_emb, ref_group_bounds in zip(preds_emb, ref_group_boundaries):
            refs_group_emb = refs_emb[ref_group_bounds[0] : ref_group_bounds[1]]
            scores.append(self.util.cos_sim(pred_emb, refs_group_emb).max().item())

        return [{"score": score} for score in scores]


class Reward(BulkInstanceMetric):
    reduction_map = {"mean": ["score"]}
    main_score = "score"
    batch_size: int = 32

    model_name: str

    def prepare(self):
        super().prepare()
        from transformers import pipeline

        self.pipe = pipeline("text-classification", model=self.model_name)

    def compute(
        self,
        references: List[List[Any]],
        predictions: List[Any],
        additional_inputs: List[Dict],
    ) -> List[Any]:
        # treat the references as the questions and the predictions as answers
        # assume a single reference
        questions = [refs[0] for refs in references]
        answers = predictions

        # prepare for computation
        inputs = [{"text": q, "text_pair": a} for q, a in zip(questions, answers)]

        # compute the metric
        # add function_to_apply="none" to disable sigmoid
        return self.pipe(inputs, batch_size=self.batch_size)


class NDCG(GlobalMetric):
    """Normalized Discounted Cumulative Gain: measures the quality of ranking with respect to ground truth ranking scores.

    As this measures ranking, it is a global metric that can only be calculated over groups of instances. In the
    common use case where the instances are grouped by different queries, i.e., where the task is to provide a
    relevance score for a search result w.r.t. a query, an nDCG score is calculated per each query (specified in the
    "query" input field of an instance) and the final score is the average across all queries.
    Note that the expected scores are relevance scores (i.e., higher is better) and not rank indices. The absolute
    value of the scores is only meaningful for the reference scores; for the predictions, only the ordering of the
    scores affects the outcome - for example, predicted scores of [80, 1, 2] and [0.8, 0.5, 0.6] will receive
    the same nDCG score w.r.t. a given set of reference scores.

    See also https://en.wikipedia.org/wiki/Discounted_cumulative_gain
    """

    main_score = "nDCG"

    def prepare(self):
        from sklearn.metrics import ndcg_score

        super().prepare()
        self.eval = ndcg_score

    def compute(
        self,
        references: List[List[Any]],
        predictions: List[Any],
        additional_inputs: List[Any],
    ) -> dict:
        from collections import defaultdict
        from statistics import mean

        query_to_predictions_and_references = defaultdict(lambda: [[], []])
        for reference, pred, inputs_dict in zip(
            references, predictions, additional_inputs
        ):
            query = inputs_dict.get("query")
            query_to_predictions_and_references[query][0].append(pred)
            query_to_predictions_and_references[query][1].append(reference)

        scores = []
        for q_predictions, q_references in query_to_predictions_and_references.values():
            if len(q_references) == 1:
                continue

            if (
                None in q_predictions
            ):  # model failed to predict numeric scores for some instances
                numeric_predictions = [
                    pred for pred in q_predictions if pred is not None
                ]
                if len(numeric_predictions) <= 1:  # no meaningful ranking
                    scores.append(0)
                    continue
                # consider non-numeric model predictions as ranked last
                min_value = min(numeric_predictions)
                q_predictions = [
                    1 + (pred - min_value) if pred is not None else 0
                    for pred in q_predictions
                ]
            scores.append(self.eval([q_references], [q_predictions]))
        return {self.main_score: mean(scores) if len(scores) > 0 else np.nan}


class RetrievalMetric(InstanceMetric):
    def compute(
        self, references: List[Any], prediction: Any, additional_inputs: Dict
    ) -> dict:
        # digest input
        pred_ids: List[Any] = prediction
        ref_ids: List[Any] = list(dict.fromkeys(references))

        # relevance_at_k: 1-based dictionary of indicators (0/1), telling whether
        # the doc id retrieved at position k (assuming it is 1-based, so k starts
        # from 1) is in the gold doc ids or not.
        # For example, assuming that in the retrieved docs we have correct predictions
        # at positions 2, 4 and 5 (1-based), the dict will look like:
        # {1: 0, 2: 1, 3: 0, 4: 1, 5: 1, ...}
        relevance_at_k = {
            k + 1: 1 if doc_id in ref_ids else 0 for k, doc_id in enumerate(pred_ids)
        }

        # relevance_sum_at_k: 1-based dictionary of counts, where the value at k determines
        # how many gold doc ids have been observed up to index k.
        relevance_sum_at_k = {}
        for k, value in relevance_at_k.items():
            relevance_sum_at_k[k] = relevance_sum_at_k.get(k - 1, 0) + value

        # precision_at_k: the precision of the top k retrieved documents. For example,
        # assuming that only 1 out of the first 4 retrieved documents is correct, the
        # value at 4 will be 1/4.
        precision_at_k = {k: value / k for k, value in relevance_sum_at_k.items()}

        # recall_at_k: the recall of the top k retrieved documents. For example,
        # assuming that only 2 out of the 3 gold documents are in the top 5 results,
        # the value at 5 will be 2/3.
        n_refs = len(ref_ids)
        recall_at_k = {
            k: value / n_refs if n_refs > 0 else 0
            for k, value in relevance_sum_at_k.items()
        }

        # rank - the 1-based index of the first hit of a gold doc id. So 1
        # means first position.
        rank = 0
        for k, relevance in relevance_at_k.items():
            if relevance == 1:
                rank = k
                break

        # match_at_k: whether we have a match at the top k retrieved documents
        match_at_k = {
            k: 1.0 if value > 0 else 0.0 for k, value in relevance_sum_at_k.items()
        }

        return self._compute(
            relevance_at_k,
            relevance_sum_at_k,
            precision_at_k,
            recall_at_k,
            match_at_k,
            rank,
        )

    @abstractmethod
    def _compute(
        self,
        relevance_at_k,
        relevance_sum_at_k,
        precision_at_k,
        recall_at_k,
        match_at_k,
        rank,
    ) -> dict:
        pass


class MRR(RetrievalMetric):
    reduction_map = {"mean": ["mrr"]}
    main_score = "mrr"

    def _compute(
        self,
        relevance_at_k,
        relevance_sum_at_k,
        precision_at_k,
        recall_at_k,
        match_at_k,
        rank,
    ) -> dict:
        return {self.main_score: 1 / rank if rank > 0 else 0}


class MAP(RetrievalMetric):
    reduction_map = {"mean": ["map"]}
    main_score = "map"

    def _compute(
        self,
        relevance_at_k,
        relevance_sum_at_k,
        precision_at_k,
        recall_at_k,
        match_at_k,
        rank,
    ) -> dict:
        result = 0
        if len(relevance_at_k) > 0:
            total = sum(relevance_at_k.values())
            if total > 0:
                dot = sum(relevance_at_k[k] * precision_at_k[k] for k in relevance_at_k)
                result = dot / total
        return {self.main_score: result}


class RetrievalAtK(RetrievalMetric):
    k_list: List[int]
    main_score: str = None
    reduction_map: Dict[str, List[str]] = None

    def prepare(self):
        super().prepare()
        self.main_score = self.score_name("match", self.k_list[0])
        self.ci_scores = [
            self.score_name(measure, k)
            for measure in ["precision", "recall", "match"]
            for k in self.k_list
        ]
        self.reduction_map = {"mean": self.ci_scores}

    @staticmethod
    def score_name(measure: str, k: int):
        return f"{measure}_at_{k}"

    def _compute(
        self,
        relevance_at_k,
        relevance_sum_at_k,
        precision_at_k,
        recall_at_k,
        match_at_k,
        rank,
    ) -> dict:
        result = {}
        for measure_array, measure_name in [
            (precision_at_k, "precision"),
            (recall_at_k, "recall"),
            (match_at_k, "match"),
        ]:
            max_k = max(measure_array.keys())
            for k in self.k_list:
                result[self.score_name(measure_name, k)] = measure_array[min(k, max_k)]
        return result


class KPA(CustomF1):
    def get_element_group(self, element, additional_input):
        return additional_input["keypoint"]

    def get_element_representation(self, element, additional_input):
        return additional_input["keypoint"]

    def should_ignore_element(self, element, additional_input):
        return element == "none"