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--- |
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dataset_info: |
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features: |
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- name: '#genome' |
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dtype: string |
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- name: asm_name |
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dtype: string |
|
- name: assembly_accession |
|
dtype: string |
|
- name: bioproject |
|
dtype: string |
|
- name: biosample |
|
dtype: string |
|
- name: wgs_master |
|
dtype: float64 |
|
- name: seq_rel_date |
|
dtype: string |
|
- name: submitter |
|
dtype: string |
|
- name: ftp_path |
|
dtype: string |
|
- name: img_id |
|
dtype: float64 |
|
- name: gtdb_id |
|
dtype: string |
|
- name: scope |
|
dtype: string |
|
- name: assembly_level |
|
dtype: string |
|
- name: genome_rep |
|
dtype: string |
|
- name: refseq_category |
|
dtype: string |
|
- name: release_type |
|
dtype: string |
|
- name: taxid |
|
dtype: float64 |
|
- name: species_taxid |
|
dtype: float64 |
|
- name: organism_name |
|
dtype: string |
|
- name: infraspecific_name |
|
dtype: string |
|
- name: isolate |
|
dtype: string |
|
- name: superkingdom |
|
dtype: string |
|
- name: phylum |
|
dtype: string |
|
- name: class |
|
dtype: string |
|
- name: order |
|
dtype: string |
|
- name: family |
|
dtype: string |
|
- name: genus |
|
dtype: string |
|
- name: species |
|
dtype: string |
|
- name: classified |
|
dtype: bool |
|
- name: lv1_group |
|
dtype: string |
|
- name: lv2_group |
|
dtype: string |
|
- name: score_faa |
|
dtype: float64 |
|
- name: score_fna |
|
dtype: float64 |
|
- name: score_rrna |
|
dtype: float64 |
|
- name: score_trna |
|
dtype: float64 |
|
- name: total_length |
|
dtype: float64 |
|
- name: contigs |
|
dtype: float64 |
|
- name: gc |
|
dtype: float64 |
|
- name: n50 |
|
dtype: float64 |
|
- name: l50 |
|
dtype: float64 |
|
- name: proteins |
|
dtype: float64 |
|
- name: protein_length |
|
dtype: float64 |
|
- name: coding_density |
|
dtype: float64 |
|
- name: completeness |
|
dtype: float64 |
|
- name: contamination |
|
dtype: float64 |
|
- name: strain_heterogeneity |
|
dtype: float64 |
|
- name: markers |
|
dtype: float64 |
|
- name: 5s_rrna |
|
dtype: string |
|
- name: 16s_rrna |
|
dtype: string |
|
- name: 23s_rrna |
|
dtype: string |
|
- name: trnas |
|
dtype: float64 |
|
- name: draft_quality |
|
dtype: string |
|
- name: start_position |
|
dtype: int64 |
|
- name: human_label |
|
dtype: int64 |
|
- name: autotrain_text |
|
dtype: string |
|
- name: autotrain_label |
|
dtype: |
|
class_label: |
|
names: |
|
'0': Acetobacter pasteurianus IFO 3283-01 IFO 3283 substr. IFO 3283-01 |
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'1': Alcanivorax borkumensis SK2 |
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'2': Aquifex aeolicus VF5 |
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'3': Archaeoglobus fulgidus DSM 4304 |
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'4': Azorhizobium caulinodans ORS 571 |
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'5': Bacillus anthracis str. Ames |
|
'6': Bacillus anthracis str. Sterne ASM816v1 |
|
'7': Bacillus cereus ATCC 14579 |
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'8': Bacillus clausii KSM-K16 |
|
'9': Bacillus pseudofirmus OF4 |
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'10': Bacteroides fragilis YCH46 |
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'11': Bacteroides thetaiotaomicron VPI-5482 |
|
'12': Bifidobacterium adolescentis ATCC 15703 |
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'13': Bifidobacterium longum NCC2705 |
|
'14': Borrelia burgdorferi B31 |
|
'15': Brevibacillus brevis NBRC 100599 |
|
'16': Buchnera aphidicola str. Bp (Baizongia pistaciae) |
|
'17': Buchnera aphidicola str. Sg (Schizaphis graminum) Sg |
|
'18': Caldanaerobacter subterraneus subsp. tengcongensis MB4 |
|
'19': Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2 |
|
'20': Candidatus Vesicomyosocius okutanii HA |
|
'21': Chlamydia felis Fe/C-56 |
|
'22': Chlamydia trachomatis D/UW-3/CX |
|
'23': Chlamydophila caviae GPIC |
|
'24': Chlamydophila pneumoniae CWL029 |
|
'25': Chlamydophila pneumoniae TW-183 |
|
'26': Chlorobium tepidum TLS |
|
'27': Chromobacterium violaceum ATCC 12472 |
|
'28': Clostridioides difficile 630 ASM920v1 |
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'29': Clostridium acetobutylicum ATCC 824 |
|
'30': Clostridium tetani E88 Massachusetts substr. E88 |
|
'31': Corynebacterium jeikeium K411 K411 = NCTC 11915 |
|
'32': Coxiella burnetii RSA 493 ASM776v1 |
|
'33': Deferribacter desulfuricans SSM1 |
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'34': Dehalococcoides mccartyi CBDB1 |
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'35': Deinococcus radiodurans R1 ASM856v1 |
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'36': Desulfovibrio magneticus RS-1 |
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'37': Enterococcus faecalis V583 ASM778v1 |
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'38': Escherichia coli O157:H7 str. Sakai Sakai substr. RIMD 0509952 |
|
'39': Finegoldia magna ATCC 29328 |
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'40': Francisella tularensis subsp. holarctica LVS ASM924v1 |
|
'41': Fusobacterium nucleatum subsp. nucleatum ATCC 25586 |
|
'42': Gemmatimonas aurantiaca T-27 |
|
'43': Geobacter sulfurreducens PCA |
|
'44': Haemophilus ducreyi 35000HP |
|
'45': Haloquadratum walsbyi DSM 16790 DSM 16790 = HBSQ001 |
|
'46': Helicobacter acinonychis str. Sheeba |
|
'47': Helicobacter hepaticus ATCC 51449 |
|
'48': Helicobacter pylori 26695 ASM852v1 |
|
'49': Hydrogenobacter thermophilus TK-6 ASM1078v1 |
|
'50': Idiomarina loihiensis L2TR |
|
'51': Kocuria rhizophila DC2201 |
|
'52': Lactobacillus fermentum IFO 3956 |
|
'53': Lactobacillus salivarius UCC118 |
|
'54': Lactococcus lactis subsp. lactis Il1403 IL1403 |
|
'55': Macrococcus caseolyticus JCSC5402 |
|
'56': Magnetospirillum magneticum AMB-1 |
|
'57': Mannheimia succiniciproducens MBEL55E |
|
'58': Methanocella paludicola SANAE |
|
'59': Methanococcus voltae A3 |
|
'60': Methanopyrus kandleri AV19 |
|
'61': Methanosarcina acetivorans C2A |
|
'62': Methanothermobacter thermautotrophicus str. Delta H |
|
'63': Methylococcus capsulatus str. Bath |
|
'64': Microcystis aeruginosa NIES-843 |
|
'65': Mycobacterium avium subsp. paratuberculosis K-10 |
|
'66': Neisseria gonorrhoeae FA 1090 |
|
'67': Neisseria meningitidis MC58 |
|
'68': Nitratiruptor sp. SB155-2 ASM1032v1 |
|
'69': Nitrosomonas europaea ATCC 19718 |
|
'70': Nostoc sp. PCC 7120 ASM970v1 |
|
'71': Onion yellows phytoplasma OY-M onion yellows |
|
'72': Orientia tsutsugamushi str. Ikeda |
|
'73': Pelotomaculum thermopropionicum SI |
|
'74': Picrophilus torridus DSM 9790 |
|
'75': Porphyromonas gingivalis ATCC 33277 |
|
'76': Prochlorococcus marinus subsp. marinus str. CCMP1375 |
|
'77': Propionibacterium acnes KPA171202 |
|
'78': Pseudomonas putida KT2440 |
|
'79': Pyrobaculum aerophilum str. IM2 |
|
'80': Pyrococcus furiosus DSM 3638 |
|
'81': Ralstonia solanacearum GMI1000 |
|
'82': Rickettsia conorii str. Malish 7 |
|
'83': Rickettsia typhi str. Wilmington |
|
'84': Rothia mucilaginosa DY-18 |
|
'85': Shigella flexneri 2a str. 301 |
|
'86': Sinorhizobium meliloti 1021 |
|
'87': Sodalis glossinidius str. 'morsitans' morsitans |
|
'88': Staphylococcus epidermidis ATCC 12228 ASM764v1 |
|
'89': Staphylococcus haemolyticus JCSC1435 |
|
'90': Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 ASM1012v1 |
|
'91': Streptococcus agalactiae 2603V/R |
|
'92': Streptococcus mutans UA159 |
|
'93': Streptococcus pyogenes M1 GAS SF370 |
|
'94': Streptococcus uberis 0140J |
|
'95': Streptomyces avermitilis MA-4680 = NBRC 14893 MA-4680 ASM976v2 |
|
'96': Streptomyces griseus subsp. griseus NBRC 13350 |
|
'97': Sulfolobus solfataricus P2 |
|
'98': Sulfurovum sp. NBC37-1 ASM1034v1 |
|
'99': Symbiobacterium thermophilum IAM 14863 IAM14863 |
|
'100': Synechococcus elongatus PCC 6301 |
|
'101': Synechocystis sp. PCC 6803 ASM972v1 |
|
'102': Thermococcus kodakarensis KOD1 |
|
'103': Thermotoga maritima MSB8 ASM854v1 |
|
'104': Treponema denticola ATCC 35405 |
|
'105': Treponema pallidum subsp. pallidum str. Nichols ASM860v1 |
|
'106': Tropheryma whipplei str. Twist |
|
'107': Vibrio cholerae O1 biovar El Tor str. N16961 |
|
'108': Vibrio vulnificus YJ016 |
|
'109': Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis |
|
'110': Wolbachia endosymbiont of Drosophila melanogaster wMel |
|
'111': Wolbachia endosymbiont strain TRS of Brugia malayi |
|
'112': Xanthomonas campestris pv. campestris str. ATCC 33913 |
|
'113': Xanthomonas oryzae pv. oryzae KACC 10331 |
|
'114': Xylella fastidiosa 9a5c |
|
'115': Yersinia enterocolitica subsp. enterocolitica 8081 |
|
'116': Yersinia pestis CO92 ASM906v1 |
|
'117': Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 ZM4 |
|
'118': '[Bacillus thuringiensis] serovar konkukian str. 97-27' |
|
'119': '[Pseudomonas syringae] pv. tomato str. DC3000' |
|
'120': homo sapiens |
|
splits: |
|
- name: train |
|
num_bytes: 683959051 |
|
num_examples: 1000000 |
|
- name: validation |
|
num_bytes: 68390921 |
|
num_examples: 100000 |
|
download_size: 158127793 |
|
dataset_size: 752349972 |
|
configs: |
|
- config_name: default |
|
data_files: |
|
- split: train |
|
path: data/train-* |
|
- split: validation |
|
path: data/validation-* |
|
--- |
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# Dataset Card for "autotrain-data-species_classify" |
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|
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[More Information needed](https://github.com/huggingface/datasets/blob/main/CONTRIBUTING.md#how-to-contribute-to-the-dataset-cards) |
