Datasets:
ptsw
/
ref_seq_viral_tandemrepeats

Dataset card Viewer Files Community
1
id
stringlengths
11
11
start_pos
int64
1
2.47M
end_pos
int64
16
2.47M
motif_seq
stringlengths
8
100
motif_length
int64
8
100
repeats
int64
2
96
ltr_length
int64
16
2.42k
__index_level_0__
int64
0
1.24k
NC_079144.1
37,884
37,899
AAACCTGG
8
2
16
3
NC_078858.1
977
996
AGACTGTGGC
10
2
20
0
NC_079141.1
5,567
5,584
GCGGGCGGT
9
2
18
0
NC_025824.1
1,846
1,890
TCTGAGGGTGGCGGT
15
3
45
0
NC_025824.1
2,308
2,337
GGTGGCGGCTCTGAG
15
2
30
1
NC_079145.1
8,900
8,915
ACAACCGC
8
2
16
0
NC_079145.1
33,636
33,653
GGCAACGCC
9
2
18
1
NC_079145.1
36,586
36,601
AAACCTGG
8
2
16
2
NC_079142.1
8,908
8,923
ACAACCGC
8
2
16
0
NC_079142.1
35,368
35,383
AAACCTGG
8
2
16
1
NC_079140.1
14,835
14,852
ACAGTGCCG
9
2
18
0
NC_079140.1
25,530
25,553
GGCGGGCTTCGG
12
2
24
1
NC_079146.1
187
202
CGCGTCAG
8
2
16
0
NC_079146.1
5,875
5,898
TGGAGACCGGGA
12
2
24
1
NC_079146.1
8,666
8,683
GAGCGCCGC
9
2
18
2
NC_079146.1
13,813
13,830
CGAGGAGTT
9
2
18
3
NC_079146.1
16,823
16,840
GTGCCGCCG
9
2
18
4
NC_079146.1
18,296
18,331
ACGGGGGCAAGGATGGCG
18
2
36
5
NC_079146.1
22,066
22,083
GAAGAACAT
9
2
18
6
NC_079146.1
23,677
23,760
CCGAGACGGTATCCGATGCTCCCGCTGCGGAGTCGGAGAAGC
42
2
84
7
NC_079146.1
49,468
49,487
GACGTCAAGC
10
2
20
8
NC_079146.1
58,753
58,776
TGGGCGGCACTA
12
2
24
9
NC_079146.1
58,849
58,874
TGGGCGGCACTGG
13
2
26
10
NC_079146.1
67,492
67,507
AAATGAAT
8
2
16
11
NC_079146.1
67,565
67,580
TATATGTG
8
2
16
12
NC_079143.1
8,896
8,911
ACAACCGC
8
2
16
0
NC_079143.1
17,994
18,009
CCCGCCGG
8
2
16
1
NC_079143.1
32,292
32,315
CCACCGACCCAC
12
2
24
2
NC_079143.1
36,752
36,767
TGTCCACG
8
2
16
3
NC_027399.1
4,187
4,202
AAGAAATT
8
2
16
0
NC_027399.1
9,384
9,401
TGATTTTGG
9
2
18
1
NC_027399.1
28,563
28,580
AAGCTGCAC
9
2
18
2
NC_027399.1
28,657
28,674
TTTAGCTGA
9
2
18
3
NC_027399.1
30,860
30,925
TTCTGGTGGTACTGGTGATACAGATAATCAAAG
33
2
66
4
NC_027399.1
53,749
53,772
CAGAGAATTCCA
12
2
24
5
NC_027399.1
76,645
76,664
TTCAGTACTG
10
2
20
6
NC_027399.1
98,630
98,647
TATTAGTAG
9
2
18
7
NC_027399.1
123,529
123,544
AAAATACG
8
2
16
8
NC_027399.1
139,316
139,333
CACTGGAAA
9
2
18
9
NC_027399.1
142,039
142,054
AAGAAGCG
8
2
16
10
NC_027399.1
164,590
164,605
ATTAAAAC
8
2
16
11
NC_027399.1
195,909
195,926
TGCAAAAAA
9
2
18
12
NC_027399.1
223,791
223,808
AAAGAATTA
9
2
18
13
NC_027399.1
226,436
226,455
TCTTTACAAA
10
2
20
14
NC_027399.1
244,417
244,432
AATTGATT
8
2
16
15
NC_027399.1
246,438
246,453
TATGATAA
8
2
16
16
NC_027399.1
253,799
253,816
ATATGTTCA
9
2
18
17
NC_027399.1
275,752
275,769
TGAATTACT
9
2
18
18
NC_027399.1
291,116
291,131
TAAAAAAC
8
2
16
19
NC_027399.1
293,856
293,873
AGTTCTTCA
9
2
18
20
NC_027399.1
296,185
296,200
TGAAAAAA
8
2
16
21
NC_027399.1
339,674
339,691
TACAAAATT
9
2
18
22
NC_027399.1
341,800
341,817
ACTGGAACA
9
2
18
23
NC_025440.1
20,516
20,533
AAAAGAAAT
9
2
18
0
NC_025440.1
24,826
24,870
CCTCTCTTAAATCTG
15
3
45
1
NC_025440.1
24,871
24,915
CATTACTTAAATCTG
15
3
45
2
NC_025440.1
24,931
24,960
CCTCTCTTAAATCTG
15
2
30
3
NC_025440.1
24,961
24,990
CATTACTTAAATCTG
15
2
30
4
NC_025440.1
24,996
25,025
CTTAAATTTGCATTA
15
2
30
5
NC_025440.1
25,041
25,100
CTTAAATCTGCATTA
15
4
60
6
NC_025440.1
28,984
28,999
ACCTCCTC
8
2
16
7
NC_025440.1
30,150
30,165
ATTCACCC
8
2
16
8
NC_025440.1
37,576
37,591
TTCTTTAA
8
2
16
9
NC_025440.1
42,299
42,314
ATTTTTCT
8
2
16
10
NC_025440.1
47,282
47,299
TCTACTTTA
9
2
18
11
NC_025440.1
119,351
119,410
TTCTTTCTTAGGTTC
15
4
60
12
NC_025440.1
121,807
121,824
TTGTCTTTC
9
2
18
13
NC_025440.1
121,853
121,876
TGTCTTCTTCAC
12
2
24
14
NC_047856.1
20,188
20,205
AGAGCTTGC
9
2
18
0
NC_047856.1
34,612
34,629
ATGCGAACC
9
2
18
1
NC_061437.1
5,991
6,008
GGAACTCCT
9
2
18
0
NC_061437.1
19,329
19,350
AACCCCGTTAG
11
2
22
1
NC_061437.1
31,138
31,153
AGCGCCTC
8
2
16
2
NC_073071.1
2,975
2,998
AAGCGGGACAAA
12
2
24
0
NC_073071.1
3,062
3,077
AGCGGGAC
8
2
16
1
NC_073071.1
14,224
14,241
GAAGACGGC
9
2
18
2
NC_073071.1
19,504
19,519
CGGGACAG
8
2
16
3
NC_073071.1
32,474
32,493
GTCATGTACG
10
2
20
4
NC_073071.1
39,202
39,217
ACGCCGCC
8
2
16
5
NC_070779.1
51,820
51,837
TCTTCAATT
9
2
18
0
NC_070779.1
76,373
76,396
CAGCTTGTAGTT
12
2
24
1
NC_070779.1
132,542
132,557
CTTCACCA
8
2
16
2
NC_070779.1
133,200
133,215
AACATATT
8
2
16
3
NC_005859.1
9,574
9,619
ATTCCGCTTTTTAAATGAGAATC
23
2
46
0
NC_005859.1
21,373
21,388
TTTCTTGA
8
2
16
1
NC_005859.1
35,825
35,842
CCTTCCCAG
9
2
18
2
NC_005859.1
43,249
43,264
TTTAGAAG
8
2
16
3
NC_005859.1
90,478
90,493
TAGAAATC
8
2
16
4
NC_005859.1
121,105
121,150
ATTCCGCTTTTTAAATGAGAATC
23
2
46
5
NC_079182.1
30,530
30,555
ATAATTTTTTTTT
13
2
26
0
NC_079182.1
41,578
41,593
TTGGAATA
8
2
16
1
NC_079182.1
43,957
43,974
TGCCGAAGC
9
2
18
2
NC_079181.1
11,528
11,543
TTGGAATA
8
2
16
0
NC_079181.1
13,905
13,922
TGCCGAAGC
9
2
18
1
NC_079179.1
9,448
9,463
TTGGAATA
8
2
16
0
NC_079178.1
10,036
10,051
TTGGAATA
8
2
16
0
NC_079178.1
16,761
16,778
TGCCAACGA
9
2
18
1
NC_079178.1
41,735
41,752
CCCAATCAT
9
2
18
2
NC_079177.1
9,888
9,903
TTGGAATA
8
2
16
0
NC_079188.1
38,943
38,958
TGAACCGC
8
2
16
0