Datasets:
ptsw
/
ref_seq_viral_tandemrepeats

Dataset card Viewer Files Community
1
id
stringlengths
11
11
start_pos
int64
1
2.47M
end_pos
int64
16
2.47M
motif_seq
stringlengths
8
100
motif_length
int64
8
100
repeats
int64
2
96
ltr_length
int64
16
2.42k
__index_level_0__
int64
0
1.24k
NC_020877.1
99,834
99,861
AAGTAACTAAAAGA
14
2
28
6
NC_020877.1
100,026
100,081
CAAGTATCAAGTATCAAGTATCAAGTAG
28
2
56
7
NC_020877.1
100,083
100,152
AAGTAGTAAGTAGTAAGTAGTAAGTATCAAGTATC
35
2
70
8
NC_020877.1
109,030
109,045
ATCAACCT
8
2
16
9
NC_020877.1
113,575
113,592
TTTAATTCT
9
2
18
10
NC_020877.1
130,312
130,329
TTTATTTTG
9
2
18
11
NC_047721.1
6,179
6,196
TAGAAGCAT
9
2
18
0
NC_047721.1
6,742
6,765
CCACTATCAGAA
12
2
24
1
NC_047721.1
7,993
8,010
GCTCCTATA
9
2
18
2
NC_047721.1
8,196
8,213
TTTCTTAGC
9
2
18
3
NC_047721.1
20,949
20,966
TCTTTTTTA
9
2
18
4
NC_047721.1
25,745
25,760
CTTTTTTA
8
2
16
5
NC_047721.1
28,931
28,946
TTCATTTG
8
2
16
6
NC_047721.1
66,898
66,915
TATAAAAAA
9
2
18
7
NC_047721.1
72,062
72,085
TAGTAGTAATAG
12
2
24
8
NC_047721.1
72,106
72,213
TAGTAGTAGTAA
12
9
108
9
NC_047721.1
74,560
74,631
TTTTCCCAATAGTTAACTCCTTCT
24
3
72
10
NC_047721.1
75,215
75,232
ATCTACATA
9
2
18
11
NC_047721.1
75,389
75,408
TTAATTATTT
10
2
20
12
NC_047721.1
78,916
78,937
GCTGTCAACAG
11
2
22
13
NC_047721.1
84,564
84,581
TTTGTATTG
9
2
18
14
NC_047721.1
87,235
87,250
GTAGGTAA
8
2
16
15
NC_047721.1
98,185
98,206
ATATCTATTAC
11
2
22
16
NC_047721.1
98,608
98,625
TTCCTCTTG
9
2
18
17
NC_047721.1
102,535
102,550
TTTTTATC
8
2
16
18
NC_047721.1
110,336
110,351
TCTCCATA
8
2
16
19
NC_047721.1
113,997
114,012
TTAATTAC
8
2
16
20
NC_025417.1
44,111
44,126
CAAATGAA
8
2
16
0
NC_025417.1
52,071
52,088
ATAAAAAAG
9
2
18
1
NC_025417.1
64,826
64,843
AGCTAAGAA
9
2
18
2
NC_025417.1
65,027
65,044
AGCTATAGG
9
2
18
3
NC_025417.1
66,275
66,298
TTCTGATAGTGG
12
2
24
4
NC_025417.1
66,844
66,861
ATGCTTCTA
9
2
18
5
NC_025417.1
97,265
97,280
GTAATTAA
8
2
16
6
NC_025417.1
100,927
100,942
ATATGGAG
8
2
16
7
NC_025417.1
108,730
108,745
GATAAAAA
8
2
16
8
NC_025417.1
114,029
114,046
AACAAGAGG
9
2
18
9
NC_025417.1
114,450
114,471
GTAATAGATAT
11
2
22
10
NC_025417.1
125,409
125,424
TTACCTAC
8
2
16
11
NC_025417.1
128,078
128,095
AAACAATAC
9
2
18
12
NC_025417.1
133,726
133,747
CCTGTTGACAG
11
2
22
13
NC_025417.1
137,256
137,275
AAATAATTAA
10
2
20
14
NC_025417.1
137,432
137,449
TATGTAGAT
9
2
18
15
NC_025417.1
138,025
138,072
TGGGAAAAAGAAGGAGTTAACTAT
24
2
48
16
NC_025417.1
140,419
140,490
TACTACTATTAC
12
6
72
17
NC_025417.1
140,714
140,897
TACTACTAAGTACCTTTGTTATGTACTACTATTACTACTACTATTACTACTACTATTACTACTACTATTACTACTACTATTACTACTACTAT
92
2
184
18
NC_047744.1
1,287
1,302
ATCATCTT
8
2
16
0
NC_047744.1
15,074
15,089
GGGAAAGA
8
2
16
1
NC_047744.1
75,645
75,660
TTCTTCTC
8
2
16
2
NC_047744.1
87,891
87,908
GCTCCTCCT
9
2
18
3
NC_047744.1
94,205
94,222
GATGTCCAT
9
2
18
4
NC_047744.1
136,697
136,740
ATATCGTGCATCGTATTAATAA
22
2
44
5
NC_047744.1
141,640
141,657
GTCGATATT
9
2
18
6
NC_047744.1
147,116
147,211
TCTGTGTAGGGAGCTACTAAGGAAATTCCTAT
32
3
96
7
NC_047871.1
932
961
TGCATCGCTTAAATC
15
2
30
0
NC_047871.1
1,310
1,339
ATTAGTTAGGTCTAG
15
2
30
1
NC_047871.1
3,853
3,868
ACCTCCTC
8
2
16
2
NC_047871.1
11,153
11,176
CTATTAGCATAT
12
2
24
3
NC_047871.1
12,208
12,223
TTCTTTAA
8
2
16
4
NC_047871.1
16,821
16,836
CCCCACCA
8
2
16
5
NC_047871.1
18,951
18,966
ATTTTTCT
8
2
16
6
NC_047871.1
23,861
23,878
TCTACTTTA
9
2
18
7
NC_047871.1
39,664
39,679
TTTGATTC
8
2
16
8
NC_047871.1
50,842
50,859
CTGTTACTA
9
2
18
9
NC_047871.1
95,673
95,762
TTCTTCTTTCTTAGG
15
6
90
10
NC_047871.1
98,161
98,178
TCTTTCTTG
9
2
18
11
NC_047871.1
106,181
106,196
CTATAAAA
8
2
16
12
NC_047872.1
1,827
1,842
TTCTTTAA
8
2
16
0
NC_047872.1
6,441
6,456
CCCCACCA
8
2
16
1
NC_047872.1
8,576
8,591
ATTTTTCT
8
2
16
2
NC_047872.1
13,487
13,513
TCTACTTTA
9
3
27
3
NC_047872.1
29,896
29,911
TTTGATTC
8
2
16
4
NC_047872.1
40,091
40,108
CTGTTACTA
9
2
18
5
NC_047872.1
84,911
84,985
TTCTTTCTTAGGTTC
15
5
75
6
NC_047872.1
87,381
87,398
TCTTTCTTG
9
2
18
7
NC_047872.1
95,413
95,428
CTATAAAA
8
2
16
8
NC_047872.1
102,914
102,937
GTGTATGAAACC
12
2
24
9
NC_047872.1
127,102
127,146
TGCATCGCTTAAATC
15
3
45
10
NC_047872.1
127,495
127,524
ATTAGTTAGGTCTAG
15
2
30
11
NC_047872.1
130,038
130,053
ACCTCCTC
8
2
16
12
NC_055054.1
1,721
1,738
TCAAGAGCA
9
2
18
0
NC_047729.1
16,929
16,944
CAAATGAA
8
2
16
0
NC_047729.1
24,911
24,928
ATAAAAAAG
9
2
18
1
NC_047729.1
37,668
37,685
AGCTAAGAA
9
2
18
2
NC_047729.1
37,869
37,886
AGCTATAGG
9
2
18
3
NC_047729.1
39,117
39,140
TTCTGATAGTGG
12
2
24
4
NC_047729.1
39,686
39,703
ATGCTTCTA
9
2
18
5
NC_047729.1
70,107
70,122
GTAATTAA
8
2
16
6
NC_047729.1
73,770
73,785
ATATGGAG
8
2
16
7
NC_047729.1
81,572
81,587
GATAAAAA
8
2
16
8
NC_047729.1
86,871
86,888
AACAAGAGG
9
2
18
9
NC_047729.1
87,292
87,313
GTAATAGATAT
11
2
22
10
NC_047729.1
98,243
98,258
TTACCTAC
8
2
16
11
NC_047729.1
100,910
100,927
AAACAATAC
9
2
18
12
NC_047729.1
106,559
106,580
CCTGTTGACAG
11
2
22
13
NC_047729.1
110,088
110,107
AAATAATTAA
10
2
20
14
NC_047729.1
110,264
110,281
TATGTAGAT
9
2
18
15
NC_047729.1
110,857
110,904
TGGGAAAAAGAAGGAGTTAACTAT
24
2
48
16
NC_047729.1
113,292
113,363
TACTACTATTAC
12
6
72
17
NC_047729.1
113,387
113,410
TACTACTATTAC
12
2
24
18