Datasets:
ptsw
/
ref_seq_viral_tandemrepeats

Dataset card Viewer Files Community
1
id
stringlengths
11
11
start_pos
int64
1
2.47M
end_pos
int64
16
2.47M
motif_seq
stringlengths
8
100
motif_length
int64
8
100
repeats
int64
2
96
ltr_length
int64
16
2.42k
__index_level_0__
int64
0
1.24k
NC_079187.1
4,768
4,929
GAGGGTACTCAGACTTATGTGAACTACTCACGCAGCGCGAAGAGCCAAGTGCTGGCGGCTGATACACCAATCAAGCTCACA
81
2
162
0
NC_079187.1
45,183
45,198
TGAACCGC
8
2
16
1
NC_079176.1
13,131
13,148
CCCAATCAT
9
2
18
0
NC_079176.1
27,965
27,980
TATATCAA
8
2
16
1
NC_079176.1
34,438
34,453
TTGGAATA
8
2
16
2
NC_079174.1
5,643
5,658
TGCATCAA
8
2
16
0
NC_079174.1
23,632
23,649
ATGCTGAAA
9
2
18
1
NC_079174.1
48,658
48,675
ACTGGAACA
9
2
18
2
NC_079183.1
9,331
9,346
AAGATGGC
8
2
16
0
NC_079183.1
12,231
12,246
TTGGAATA
8
2
16
1
NC_079183.1
14,945
14,962
TGCCGAAGC
9
2
18
2
NC_079180.1
464
487
AAACCGAAACTA
12
2
24
0
NC_079180.1
7,938
7,953
AAGATGGC
8
2
16
1
NC_079180.1
10,453
10,468
TTGGAATA
8
2
16
2
NC_079186.1
1,114
1,137
TGTTTCTGGTGC
12
2
24
0
NC_079186.1
16,345
16,362
AAATTCGAG
9
2
18
1
NC_079186.1
23,558
23,573
GTCGTTCA
8
2
16
2
NC_079186.1
52,915
52,930
CCCAACAT
8
2
16
3
NC_079175.1
125
148
AAAAAAAATTAT
12
2
24
0
NC_079175.1
10,598
10,615
GATGATTGG
9
2
18
1
NC_079175.1
16,641
16,658
CACCGTTAA
9
2
18
2
NC_079175.1
39,043
39,060
GCAGCTTCG
9
2
18
3
NC_079175.1
41,612
41,627
TATTCCAA
8
2
16
4
NC_079185.1
3,101
3,118
TAATTATGA
9
2
18
0
NC_079185.1
10,179
10,202
AAGAAGCGGCTA
12
2
24
1
NC_079185.1
10,800
10,817
AACAACTGA
9
2
18
2
NC_079185.1
29,919
29,936
TGCATCTGG
9
2
18
3
NC_079185.1
37,850
37,867
GTGGTGGCC
9
2
18
4
NC_079185.1
51,789
51,810
AAGTAGTAGAA
11
2
22
5
NC_079185.1
53,350
53,367
ACTTCTTTC
9
2
18
6
NC_079184.1
260
281
ATAATTTTTTT
11
2
22
0
NC_079184.1
9,705
9,720
AAGATGGC
8
2
16
1
NC_079184.1
12,461
12,476
TTGGAATA
8
2
16
2
NC_079184.1
14,969
14,986
TGCCGAAGC
9
2
18
3
NC_023861.2
1,215
1,230
AGCCTCCC
8
2
16
0
NC_001798.2
444
473
CCCGCCGCCGGGGTC
15
2
30
0
NC_001798.2
484
531
GCCGCGCCCCGGCGCTCCAGCCGT
24
2
48
1
NC_001798.2
943
1,056
CCCCTCCGACCCCCTGACG
19
6
114
2
NC_001798.2
3,471
3,602
CGGGCGGGGGT
11
12
132
3
NC_001798.2
4,653
4,736
CCGCCGCCTCCTCTTCCTCCT
21
4
84
4
NC_001798.2
7,382
7,397
GGGGCCCC
8
2
16
5
NC_001798.2
7,510
7,527
CCTTTCGCG
9
2
18
6
NC_001798.2
8,032
8,069
CCGCGGCCCGTCTGCTGGC
19
2
38
7
NC_001798.2
9,083
9,229
GGCGGCCGGGCGGGGGCGCGC
21
7
147
8
NC_001798.2
9,278
9,328
GGGGAGGGGAGGACGCG
17
3
51
9
NC_001798.2
18,542
18,565
ATCTCGCGCAGG
12
2
24
10
NC_001798.2
22,457
22,480
GGCGTCCGGGGG
12
2
24
11
NC_001798.2
26,777
26,796
GTGGGGCGGG
10
2
20
12
NC_001798.2
34,914
34,929
TGGTTGGG
8
2
16
13
NC_001798.2
53,255
53,287
GGGGTTGGTTT
11
3
33
14
NC_001798.2
56,064
56,090
GGGGCCGCC
9
3
27
15
NC_001798.2
62,660
62,677
GGGTGGGAT
9
2
18
16
NC_001798.2
65,328
65,351
GACGAGGACGGG
12
2
24
17
NC_001798.2
72,133
72,297
GGCAGGGGCGGCTGG
15
11
165
18
NC_001798.2
72,859
72,876
GCGACCGGG
9
2
18
19
NC_001798.2
80,096
80,113
GCGCGGGGA
9
2
18
20
NC_001798.2
81,633
81,648
CCCCCAGG
8
2
16
21
NC_001798.2
87,831
87,846
CCCCGGCG
8
2
16
22
NC_001798.2
106,081
106,188
CCTCCCGCCCCTCCCGCC
18
6
108
23
NC_001798.2
118,092
118,238
GCGCGCCCCCGCCCGGCCGCC
21
7
147
24
NC_001798.2
119,244
119,281
GGCCGCGGGCCAGCAGACG
19
2
38
25
NC_001798.2
119,794
119,811
CGCGAAAGG
9
2
18
26
NC_001798.2
119,924
119,939
GGGGCCCC
8
2
16
27
NC_001798.2
122,557
122,592
GAGGCGGCGGAGGAGGAA
18
2
36
28
NC_001798.2
122,593
122,655
GAGGAGGCGGCGGAGGAGGAA
21
3
63
29
NC_001798.2
123,714
123,845
GCCCGACCCCC
11
12
132
30
NC_001798.2
126,251
126,364
GGGGGTCGGAGGGGCGTCA
19
6
114
31
NC_001798.2
126,775
126,822
GCGCCGGGGCGCGGCACGGCTGGA
24
2
48
32
NC_001798.2
126,844
126,873
CGGGGACCCCGGCGG
15
2
30
33
NC_001798.2
127,526
127,555
CCCGCGGCCGCCTCC
15
2
30
34
NC_001798.2
127,750
127,974
CCCGACCCCCGCCCG
15
15
225
35
NC_001798.2
129,578
129,595
CGCGGCGGC
9
2
18
36
NC_001798.2
129,919
129,936
CACGGCGGC
9
2
18
37
NC_001798.2
131,353
131,376
GGAGGAGGAGGC
12
2
24
38
NC_001798.2
133,306
133,409
CGGGCCGGGGGGA
13
8
104
39
NC_001798.2
133,411
133,442
GGGCCGGGGGGCCGGG
16
2
32
40
NC_001798.2
133,447
133,472
CGGGGGGACGGGC
13
2
26
41
NC_001798.2
133,481
133,600
CGGGGGGA
8
15
120
42
NC_001798.2
133,601
133,642
CGGGCCGGGGGGACGGGGGGA
21
2
42
43
NC_001798.2
142,690
142,705
CCCCGCCG
8
2
16
44
NC_001798.2
147,300
147,317
CGTGGGGGT
9
2
18
45
NC_001798.2
148,096
148,137
CCCGTCCCCCCGTCCCCCCGG
21
2
42
46
NC_001798.2
148,138
148,249
CCCGTCCCCCCGTCCC
16
7
112
47
NC_001798.2
148,255
148,270
CCCCCCGG
8
2
16
48
NC_001798.2
148,287
148,302
GTCCCCCC
8
2
16
49
NC_001798.2
148,303
148,326
GGCCCCCC
8
3
24
50
NC_001798.2
148,327
148,430
GGCCCGTCCCCCC
13
8
104
51
NC_001798.2
150,360
150,383
TCCTCCGCCTCC
12
2
24
52
NC_001798.2
151,805
151,822
GGCCGCCGT
9
2
18
53
NC_001798.2
152,147
152,164
GCCGCCGCG
9
2
18
54
NC_001798.2
153,757
153,981
CGGGGGTCGGGCGGG
15
15
225
55
NC_001798.2
154,181
154,210
CGCGGGGGAGGCGGC
15
2
30
56