id
stringlengths 11
11
| start_pos
int64 1
2.47M
| end_pos
int64 16
2.47M
| motif_seq
stringlengths 8
100
| motif_length
int64 8
100
| repeats
int64 2
96
| ltr_length
int64 16
2.42k
| __index_level_0__
int64 0
1.24k
|
---|---|---|---|---|---|---|---|
NC_079187.1 | 4,768 | 4,929 | GAGGGTACTCAGACTTATGTGAACTACTCACGCAGCGCGAAGAGCCAAGTGCTGGCGGCTGATACACCAATCAAGCTCACA | 81 | 2 | 162 | 0 |
NC_079187.1 | 45,183 | 45,198 | TGAACCGC | 8 | 2 | 16 | 1 |
NC_079176.1 | 13,131 | 13,148 | CCCAATCAT | 9 | 2 | 18 | 0 |
NC_079176.1 | 27,965 | 27,980 | TATATCAA | 8 | 2 | 16 | 1 |
NC_079176.1 | 34,438 | 34,453 | TTGGAATA | 8 | 2 | 16 | 2 |
NC_079174.1 | 5,643 | 5,658 | TGCATCAA | 8 | 2 | 16 | 0 |
NC_079174.1 | 23,632 | 23,649 | ATGCTGAAA | 9 | 2 | 18 | 1 |
NC_079174.1 | 48,658 | 48,675 | ACTGGAACA | 9 | 2 | 18 | 2 |
NC_079183.1 | 9,331 | 9,346 | AAGATGGC | 8 | 2 | 16 | 0 |
NC_079183.1 | 12,231 | 12,246 | TTGGAATA | 8 | 2 | 16 | 1 |
NC_079183.1 | 14,945 | 14,962 | TGCCGAAGC | 9 | 2 | 18 | 2 |
NC_079180.1 | 464 | 487 | AAACCGAAACTA | 12 | 2 | 24 | 0 |
NC_079180.1 | 7,938 | 7,953 | AAGATGGC | 8 | 2 | 16 | 1 |
NC_079180.1 | 10,453 | 10,468 | TTGGAATA | 8 | 2 | 16 | 2 |
NC_079186.1 | 1,114 | 1,137 | TGTTTCTGGTGC | 12 | 2 | 24 | 0 |
NC_079186.1 | 16,345 | 16,362 | AAATTCGAG | 9 | 2 | 18 | 1 |
NC_079186.1 | 23,558 | 23,573 | GTCGTTCA | 8 | 2 | 16 | 2 |
NC_079186.1 | 52,915 | 52,930 | CCCAACAT | 8 | 2 | 16 | 3 |
NC_079175.1 | 125 | 148 | AAAAAAAATTAT | 12 | 2 | 24 | 0 |
NC_079175.1 | 10,598 | 10,615 | GATGATTGG | 9 | 2 | 18 | 1 |
NC_079175.1 | 16,641 | 16,658 | CACCGTTAA | 9 | 2 | 18 | 2 |
NC_079175.1 | 39,043 | 39,060 | GCAGCTTCG | 9 | 2 | 18 | 3 |
NC_079175.1 | 41,612 | 41,627 | TATTCCAA | 8 | 2 | 16 | 4 |
NC_079185.1 | 3,101 | 3,118 | TAATTATGA | 9 | 2 | 18 | 0 |
NC_079185.1 | 10,179 | 10,202 | AAGAAGCGGCTA | 12 | 2 | 24 | 1 |
NC_079185.1 | 10,800 | 10,817 | AACAACTGA | 9 | 2 | 18 | 2 |
NC_079185.1 | 29,919 | 29,936 | TGCATCTGG | 9 | 2 | 18 | 3 |
NC_079185.1 | 37,850 | 37,867 | GTGGTGGCC | 9 | 2 | 18 | 4 |
NC_079185.1 | 51,789 | 51,810 | AAGTAGTAGAA | 11 | 2 | 22 | 5 |
NC_079185.1 | 53,350 | 53,367 | ACTTCTTTC | 9 | 2 | 18 | 6 |
NC_079184.1 | 260 | 281 | ATAATTTTTTT | 11 | 2 | 22 | 0 |
NC_079184.1 | 9,705 | 9,720 | AAGATGGC | 8 | 2 | 16 | 1 |
NC_079184.1 | 12,461 | 12,476 | TTGGAATA | 8 | 2 | 16 | 2 |
NC_079184.1 | 14,969 | 14,986 | TGCCGAAGC | 9 | 2 | 18 | 3 |
NC_023861.2 | 1,215 | 1,230 | AGCCTCCC | 8 | 2 | 16 | 0 |
NC_001798.2 | 444 | 473 | CCCGCCGCCGGGGTC | 15 | 2 | 30 | 0 |
NC_001798.2 | 484 | 531 | GCCGCGCCCCGGCGCTCCAGCCGT | 24 | 2 | 48 | 1 |
NC_001798.2 | 943 | 1,056 | CCCCTCCGACCCCCTGACG | 19 | 6 | 114 | 2 |
NC_001798.2 | 3,471 | 3,602 | CGGGCGGGGGT | 11 | 12 | 132 | 3 |
NC_001798.2 | 4,653 | 4,736 | CCGCCGCCTCCTCTTCCTCCT | 21 | 4 | 84 | 4 |
NC_001798.2 | 7,382 | 7,397 | GGGGCCCC | 8 | 2 | 16 | 5 |
NC_001798.2 | 7,510 | 7,527 | CCTTTCGCG | 9 | 2 | 18 | 6 |
NC_001798.2 | 8,032 | 8,069 | CCGCGGCCCGTCTGCTGGC | 19 | 2 | 38 | 7 |
NC_001798.2 | 9,083 | 9,229 | GGCGGCCGGGCGGGGGCGCGC | 21 | 7 | 147 | 8 |
NC_001798.2 | 9,278 | 9,328 | GGGGAGGGGAGGACGCG | 17 | 3 | 51 | 9 |
NC_001798.2 | 18,542 | 18,565 | ATCTCGCGCAGG | 12 | 2 | 24 | 10 |
NC_001798.2 | 22,457 | 22,480 | GGCGTCCGGGGG | 12 | 2 | 24 | 11 |
NC_001798.2 | 26,777 | 26,796 | GTGGGGCGGG | 10 | 2 | 20 | 12 |
NC_001798.2 | 34,914 | 34,929 | TGGTTGGG | 8 | 2 | 16 | 13 |
NC_001798.2 | 53,255 | 53,287 | GGGGTTGGTTT | 11 | 3 | 33 | 14 |
NC_001798.2 | 56,064 | 56,090 | GGGGCCGCC | 9 | 3 | 27 | 15 |
NC_001798.2 | 62,660 | 62,677 | GGGTGGGAT | 9 | 2 | 18 | 16 |
NC_001798.2 | 65,328 | 65,351 | GACGAGGACGGG | 12 | 2 | 24 | 17 |
NC_001798.2 | 72,133 | 72,297 | GGCAGGGGCGGCTGG | 15 | 11 | 165 | 18 |
NC_001798.2 | 72,859 | 72,876 | GCGACCGGG | 9 | 2 | 18 | 19 |
NC_001798.2 | 80,096 | 80,113 | GCGCGGGGA | 9 | 2 | 18 | 20 |
NC_001798.2 | 81,633 | 81,648 | CCCCCAGG | 8 | 2 | 16 | 21 |
NC_001798.2 | 87,831 | 87,846 | CCCCGGCG | 8 | 2 | 16 | 22 |
NC_001798.2 | 106,081 | 106,188 | CCTCCCGCCCCTCCCGCC | 18 | 6 | 108 | 23 |
NC_001798.2 | 118,092 | 118,238 | GCGCGCCCCCGCCCGGCCGCC | 21 | 7 | 147 | 24 |
NC_001798.2 | 119,244 | 119,281 | GGCCGCGGGCCAGCAGACG | 19 | 2 | 38 | 25 |
NC_001798.2 | 119,794 | 119,811 | CGCGAAAGG | 9 | 2 | 18 | 26 |
NC_001798.2 | 119,924 | 119,939 | GGGGCCCC | 8 | 2 | 16 | 27 |
NC_001798.2 | 122,557 | 122,592 | GAGGCGGCGGAGGAGGAA | 18 | 2 | 36 | 28 |
NC_001798.2 | 122,593 | 122,655 | GAGGAGGCGGCGGAGGAGGAA | 21 | 3 | 63 | 29 |
NC_001798.2 | 123,714 | 123,845 | GCCCGACCCCC | 11 | 12 | 132 | 30 |
NC_001798.2 | 126,251 | 126,364 | GGGGGTCGGAGGGGCGTCA | 19 | 6 | 114 | 31 |
NC_001798.2 | 126,775 | 126,822 | GCGCCGGGGCGCGGCACGGCTGGA | 24 | 2 | 48 | 32 |
NC_001798.2 | 126,844 | 126,873 | CGGGGACCCCGGCGG | 15 | 2 | 30 | 33 |
NC_001798.2 | 127,526 | 127,555 | CCCGCGGCCGCCTCC | 15 | 2 | 30 | 34 |
NC_001798.2 | 127,750 | 127,974 | CCCGACCCCCGCCCG | 15 | 15 | 225 | 35 |
NC_001798.2 | 129,578 | 129,595 | CGCGGCGGC | 9 | 2 | 18 | 36 |
NC_001798.2 | 129,919 | 129,936 | CACGGCGGC | 9 | 2 | 18 | 37 |
NC_001798.2 | 131,353 | 131,376 | GGAGGAGGAGGC | 12 | 2 | 24 | 38 |
NC_001798.2 | 133,306 | 133,409 | CGGGCCGGGGGGA | 13 | 8 | 104 | 39 |
NC_001798.2 | 133,411 | 133,442 | GGGCCGGGGGGCCGGG | 16 | 2 | 32 | 40 |
NC_001798.2 | 133,447 | 133,472 | CGGGGGGACGGGC | 13 | 2 | 26 | 41 |
NC_001798.2 | 133,481 | 133,600 | CGGGGGGA | 8 | 15 | 120 | 42 |
NC_001798.2 | 133,601 | 133,642 | CGGGCCGGGGGGACGGGGGGA | 21 | 2 | 42 | 43 |
NC_001798.2 | 142,690 | 142,705 | CCCCGCCG | 8 | 2 | 16 | 44 |
NC_001798.2 | 147,300 | 147,317 | CGTGGGGGT | 9 | 2 | 18 | 45 |
NC_001798.2 | 148,096 | 148,137 | CCCGTCCCCCCGTCCCCCCGG | 21 | 2 | 42 | 46 |
NC_001798.2 | 148,138 | 148,249 | CCCGTCCCCCCGTCCC | 16 | 7 | 112 | 47 |
NC_001798.2 | 148,255 | 148,270 | CCCCCCGG | 8 | 2 | 16 | 48 |
NC_001798.2 | 148,287 | 148,302 | GTCCCCCC | 8 | 2 | 16 | 49 |
NC_001798.2 | 148,303 | 148,326 | GGCCCCCC | 8 | 3 | 24 | 50 |
NC_001798.2 | 148,327 | 148,430 | GGCCCGTCCCCCC | 13 | 8 | 104 | 51 |
NC_001798.2 | 150,360 | 150,383 | TCCTCCGCCTCC | 12 | 2 | 24 | 52 |
NC_001798.2 | 151,805 | 151,822 | GGCCGCCGT | 9 | 2 | 18 | 53 |
NC_001798.2 | 152,147 | 152,164 | GCCGCCGCG | 9 | 2 | 18 | 54 |
NC_001798.2 | 153,757 | 153,981 | CGGGGGTCGGGCGGG | 15 | 15 | 225 | 55 |
NC_001798.2 | 154,181 | 154,210 | CGCGGGGGAGGCGGC | 15 | 2 | 30 | 56 |